Cla012370 (gene) Watermelon (97103) v1

Overview
NameCla012370
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionEnzyme of the cupin superfamily (AHRD V1 ***- B4F9Z6_MAIZE); contains Interpro domain(s) IPR008579 Protein of unknown function DUF861, cupin-3
LocationChr8 : 2771582 .. 2774739 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACTGAGAGGCTGGGGATCAAAGTTGAGAAGAATCCACCTGAATCCAAGCTTACCCAACTCGGCGTTCGGCAATGGCCCAAGTATTTTGATTTCTCTATCTCGTTTCTTGCTTGTTTTTCTTCATTTAATAGCTGCAATGTCATTGTTTCTGCCCCCAAATTGTTGTTAGTTGTTGCTGTTAATTGCCCATGTAGTTGTTATTTCCATCTGTCTGAAGAGTTAATGAATGTTGATAAATAGATGGATGATAGCATGCTTAAGGAGTTGTTATTATGATCTTTGACCACTTCCAGCTTCTGGTTTCTAATTTGTTGATATTGTCATTTCTCGTTTGGCTTTTAGCTGGGTAGGTAAGAACTAAGAACCACGAACCACACTGGGTTGGTTTAGTGGTCAAGAAGAGCTAATGTAAGTAATGAAAAGCATAGAGATAATGGTTTCAAGGCATGGTAGCCACTAGATAGGATTTAATATTTCATGAGTTTTCTGTTAAAGAAATGCAGTAGGATTGCAGTTGCACAAACTAGCTTGGGCACTCACAAATATAAAAATATGACCATGGAATAAAATATATTATTTTCAAGATCTTGATCATTGATATATTTACTAGTGTCAGAATCATTGGCTTTAGAAGAACCTTCCAACTCCAAGAGTATTGGAAGTGGAACGATTGCCAAAATACAATGGGAGGAGGAATACACTAAACATAAATATAACAGCAAACCGACAGACAATATATTACTTAGTAAAAACAAGGATTTAGAAAGCCTGTTTTGGGTTGCGCCTGTTTCTGAATTTTGTCCTTAGGGAAGATGTGTCCTAACTAGAATTGAGCTATTTGGTTCGCCACTCCCAAGATATAACACCTTTGAAGAGATCTTGTATGCAACTAAGTTGTCTACCAAAGCTTCTTTCCCACTTATGCTTAGTGAAAAAGAGAAAACGAATCACTTTCTATAGAATAGACTTTGATTGATAACTAGCAACTTTCTGTGAAAACTCTGTGATGCCCATTGGATCTTTGAATCTAAAGCAACTAGTGTTTTCATACCTTGTGTGGTGGTGCAATATCATAGAAATCTACTAAAAAGACATTAATTTCTAAGGCCTATCGAAGCTATAGTAATTTCCTTATACTCAACTAGCAAGGAGTGAGAACAGTTAAGAAGTTTAATGGCTAGTATTCTTGAACTTTAATTGGTAGTCTAGATGTGCCTATATTTTGTGGTAGTCAAGCTACATAGCTAAGACTAATTGTAAAGTATGTAATGGGAAAAGTAAGTACATTAAATTAGACATAACTTTATCAAACAGTTAATATCCCATAGTGTGATTTTCCATTATTTTGTCAAGTTAGATTTCCATGATTTTGTCAAGTTTGAAGAGAACTAGCAGAGCACTGATTAATTGAGAATACTTTTTAGTCTCATTCCCAAGGTAAGAATGTTCATAATTATGATGACAAAAGAGTCTTAACTCTAAATGAAACCAAAGTATGCATTATGTAAGGTGAAGTTCATAGATAACCTTTGGACGACTCACATATGTGATTGTAGTGGTGAGACCACTATAATAGGGATTTGGGTTACTCTATCAAAACAATTGTGAAAATAAGGTATATACACGTGATCGTCCAAGTCCAAAGCATACAAAAATCCTAAAGTAGCTTGTACTGTGCGTGGAGTATGTGGTTACTCCATAATGCACGTTGGTTTTTACTGTAGTCTTCAAAACACAATGTTTGGATATTTCATGGAAAGTTTTCAAATAAAATTGTTAGTTACCAAAGTCTCCTCGACAAGAAGGGAAAAAAAAAAAACCCTTCTCTCTTTCACTACATACTAGCCAAAAAAGAGTCATAACAGAACTTAATTGCACACCAGGTATTTTGAAGGACTTTGTATCTTGGGAGGTTGGGTGTCGAATAACTCGCTACAAGTGGGGAACTTCTCTAATGAAAAAATTTAGAAACGTACCTCAGCTCAAAATAGGCTTTCTAAACCCTTGTTTTTCTTATATCATTTTATCTGTGTTAGTTTGCTGTTTTGTTTCTGGTTATATATATATATTGATTAAAGCAACTGCTTTTATTGAGAAAACATAAAATAATACAAGGGCATACAAAAAACCAAACCCATAAAAATTTCATCAAAGAAAGTGGCTCCAACTAATTAAGATGTTGCCTATAAAGAAATTACAAAATGTCTTCAAAATTGAAGCTGAAAGAGAAATATGAAACCTCACTAAGGATCAAACGTCACTAGAGTTCATTATGTTCACAGCATTTTTGCTCCATTATATTTGAGCACATGTTCCAACAATCTTAGAGAAGACATATTAGGAATTTTCTTTGTCTGTTATGTAGGGCGGTGTTATAGCTTCAATTCAGAGTCAAAGTATGATCCTTGTAAACCCAAAAAAATTTACCGGATAAAATTTAAAATGATCGCAACAACCAATGAAGTTTTGGCTAATCTTAGGTGTTTATTCTGTAATCTCTACATGTGAAAAAGGAGAATTCTGAAGCTAGTGATTCTGGCTCTAATATAACTATTGTTGACAAAAATCTCGAAGAAAAAAAATACAAACATGGTAATATTTTGAGTGTTTTGTCTAACAGTGACCCAACTAAAACTTTCATAGGAATATACGTAGCTTTAGAAAGGAAGTATGGATCAAAAGGTATATTGTTAGAAACTGGATTGATTTCAAAATGTTTGCTGGCTAATCTGTTTGACCAAATTCATAATTGATAACCTGTGCCTTTTGTTTGTTTTACAAACCAATTAAAATATATCAATAAAACTTTGAATTGTCCAACAGAAACTTGAAAACCTGAGCTGAAGATATACTTAGGTTTCTCATAGAAGCATATATGTTGAATATTTGGTTGGTTTCATTGTGAAATCTAGACTGAAAACTGCATGTTAAACTGTGGATCCAATAGGTGGGGGTGTGGGCCAAGCAAATTCCCATGGACATATTCGGACAAAGAGACATGCTATCTGCTAGAAGGAAAGGTAAAGGTTACTCCTGCTGGATCAGAGGAGTCAGTTGAGATTGGCGCTGGGGATTTGGTTGTGTTCCCAAAAGGAATGAGCTGCACTTGGGATGTCTCAGTTGCTGTGGATAAGCACTATAACTTTGGCTAG

mRNA sequence

ATGGCTACTGAGAGGCTGGGGATCAAAGTTGAGAAGAATCCACCTGAATCCAAGCTTACCCAACTCGGCGTTCGGCAATGGCCCAAGTGGGGGTGTGGGCCAAGCAAATTCCCATGGACATATTCGGACAAAGAGACATGCTATCTGCTAGAAGGAAAGGTAAAGGTTACTCCTGCTGGATCAGAGGAGTCAGTTGAGATTGGCGCTGGGGATTTGGTTGTGTTCCCAAAAGGAATGAGCTGCACTTGGGATGTCTCAGTTGCTGTGGATAAGCACTATAACTTTGGCTAG

Coding sequence (CDS)

ATGGCTACTGAGAGGCTGGGGATCAAAGTTGAGAAGAATCCACCTGAATCCAAGCTTACCCAACTCGGCGTTCGGCAATGGCCCAAGTGGGGGTGTGGGCCAAGCAAATTCCCATGGACATATTCGGACAAAGAGACATGCTATCTGCTAGAAGGAAAGGTAAAGGTTACTCCTGCTGGATCAGAGGAGTCAGTTGAGATTGGCGCTGGGGATTTGGTTGTGTTCCCAAAAGGAATGAGCTGCACTTGGGATGTCTCAGTTGCTGTGGATAAGCACTATAACTTTGGCTAG

Protein sequence

MATERLGIKVEKNPPESKLTQLGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNFG
Homology
[Close]
BLAST of Cla012370 vs. TrEMBL
Match: A0A0A0KVZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G646710 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 7.0e-48
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1   MATERLGIKVEKNPPESKLTQLGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           MATERLGIKVEKNP ESKLT+LGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG
Sbjct: 43  MATERLGIKVEKNPSESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 102

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
           S ESVEIGAGDLVVFPKGMSCTWDVSVAVDKHY F
Sbjct: 103 SNESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYKF 137

[Close]
BLAST of Cla012370 vs. TrEMBL
Match: W9RZP3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025166 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.7e-44
Identity = 84/95 (88.42%), Postives = 87/95 (91.58%), Query Frame = 1 

Query: 1   MATERLGIKVEKNPPESKLTQLGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           MATE+LGIK+EKNPPESKL QLGVR WPKWGC PSKFPWTY  KETCYLLEGKVKVTPAG
Sbjct: 45  MATEKLGIKIEKNPPESKLAQLGVRNWPKWGCPPSKFPWTYDAKETCYLLEGKVKVTPAG 104

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
           S ESVEIGAGDLV FPKGM+CTWDVS AVDKHYNF
Sbjct: 105 STESVEIGAGDLVEFPKGMNCTWDVSAAVDKHYNF 139

[Close]
BLAST of Cla012370 vs. TrEMBL
Match: M5VIJ4_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025630mg PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.1e-44
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 1 

Query: 1   MATERLGIKVEKNPPESKLTQLGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           M+T++LGIK++KNPPES+L+QLGVR WPKW C PSKFPWTYSDKETCYLLEGKVKVTP G
Sbjct: 22  MSTDKLGIKIDKNPPESRLSQLGVRNWPKWSCPPSKFPWTYSDKETCYLLEGKVKVTPDG 81

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
           S ESVEIGAGDLV FPKGMSCTWDVSVAVDKHYNF
Sbjct: 82  SNESVEIGAGDLVEFPKGMSCTWDVSVAVDKHYNF 116

[Close]
BLAST of Cla012370 vs. TrEMBL
Match: V7C668_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G128400g PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.2e-43
Identity = 81/93 (87.10%), Postives = 83/93 (89.25%), Query Frame = 1 

Query: 3  TERLGIKVEKNPPESKLTQLGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSE 62
          TE+LGIK+EKNPPE KLTQLGVRQWPKW C PSKFPWTY  KETCYLLEGKVKVTP G  
Sbjct: 5  TEKLGIKIEKNPPEDKLTQLGVRQWPKWSCPPSKFPWTYESKETCYLLEGKVKVTPTGEN 64

Query: 63 ESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
          ESVEI AGD VVFPKGMSCTWDVSVAVDKHYNF
Sbjct: 65 ESVEIAAGDFVVFPKGMSCTWDVSVAVDKHYNF 97

[Close]
BLAST of Cla012370 vs. TrEMBL
Match: R0GXZ3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002235mg PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.2e-43
Identity = 84/95 (88.42%), Postives = 85/95 (89.47%), Query Frame = 1 

Query: 1   MATERLGIKVEKNPPESKLTQLGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           MATE+LGI VEKNPPESKLTQLGVR WPKWGC PSKFPWTYS KETCYLLEGKVKV P G
Sbjct: 41  MATEKLGITVEKNPPESKLTQLGVRNWPKWGCPPSKFPWTYSAKETCYLLEGKVKVYPEG 100

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
           SEE VEI AGD VVFPKGMSCTWDVSVAVDKHY F
Sbjct: 101 SEEGVEIEAGDFVVFPKGMSCTWDVSVAVDKHYQF 135

[Close]
BLAST of Cla012370 vs. NCBI nr
Match: gi|659119135|ref|XP_008459495.1| (PREDICTED: uncharacterized protein LOC103498612 [Cucumis melo])

HSP 1 Score: 201.4 bits (511), Expect = 6.9e-49
Identity = 92/96 (95.83%), Postives = 95/96 (98.96%), Query Frame = 1 

Query: 1   MATERLGIKVEKNPPESKLTQLGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           MATERLGIKVEKNP ESKL++LGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG
Sbjct: 43  MATERLGIKVEKNPSESKLSELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 102

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNFG 97
           S+ESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNFG
Sbjct: 103 SDESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNFG 138

[Close]
BLAST of Cla012370 vs. NCBI nr
Match: gi|449447523|ref|XP_004141517.1| (PREDICTED: uncharacterized protein LOC101218376 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.0e-47
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1   MATERLGIKVEKNPPESKLTQLGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           MATERLGIKVEKNP ESKLT+LGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG
Sbjct: 43  MATERLGIKVEKNPSESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 102

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
           S ESVEIGAGDLVVFPKGMSCTWDVSVAVDKHY F
Sbjct: 103 SNESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYKF 137

[Close]
BLAST of Cla012370 vs. NCBI nr
Match: gi|470107904|ref|XP_004290278.1| (PREDICTED: uncharacterized protein LOC101291295 [Fragaria vesca subsp. vesca])

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 1 

Query: 1   MATERLGIKVEKNPPESKLTQLGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           MATE+LGIK+EKNPPES LTQLGVR WPKW C PSKFPWTYS+KETCYLLEGKVKVTPAG
Sbjct: 47  MATEKLGIKIEKNPPESTLTQLGVRNWPKWSCPPSKFPWTYSEKETCYLLEGKVKVTPAG 106

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNFG 97
           S+ESVEIG GDLVVFPKGMSCTWDVSV VDKHYNFG
Sbjct: 107 SKESVEIGPGDLVVFPKGMSCTWDVSVGVDKHYNFG 142

[Close]
BLAST of Cla012370 vs. NCBI nr
Match: gi|703110944|ref|XP_010099733.1| (hypothetical protein L484_025166 [Morus notabilis])

HSP 1 Score: 185.7 bits (470), Expect = 3.9e-44
Identity = 84/95 (88.42%), Postives = 87/95 (91.58%), Query Frame = 1 

Query: 1   MATERLGIKVEKNPPESKLTQLGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           MATE+LGIK+EKNPPESKL QLGVR WPKWGC PSKFPWTY  KETCYLLEGKVKVTPAG
Sbjct: 45  MATEKLGIKIEKNPPESKLAQLGVRNWPKWGCPPSKFPWTYDAKETCYLLEGKVKVTPAG 104

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
           S ESVEIGAGDLV FPKGM+CTWDVS AVDKHYNF
Sbjct: 105 STESVEIGAGDLVEFPKGMNCTWDVSAAVDKHYNF 139

[Close]
BLAST of Cla012370 vs. NCBI nr
Match: gi|595791257|ref|XP_007199377.1| (hypothetical protein PRUPE_ppa025630mg, partial [Prunus persica])

HSP 1 Score: 184.5 bits (467), Expect = 8.7e-44
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 1 

Query: 1   MATERLGIKVEKNPPESKLTQLGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           M+T++LGIK++KNPPES+L+QLGVR WPKW C PSKFPWTYSDKETCYLLEGKVKVTP G
Sbjct: 22  MSTDKLGIKIDKNPPESRLSQLGVRNWPKWSCPPSKFPWTYSDKETCYLLEGKVKVTPDG 81

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
           S ESVEIGAGDLV FPKGMSCTWDVSVAVDKHYNF
Sbjct: 82  SNESVEIGAGDLVEFPKGMSCTWDVSVAVDKHYNF 116

The following BLAST results are available for this feature:
BLAST of Cla012370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVZ0_CUCSA7.0e-4895.79Uncharacterized protein OS=Cucumis sativus GN=Csa_5G646710 PE=4 SV=1[more]
W9RZP3_9ROSA2.7e-4488.42Uncharacterized protein OS=Morus notabilis GN=L484_025166 PE=4 SV=1[more]
M5VIJ4_PRUPE6.1e-4486.32Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025630mg PE=4 S... [more]
V7C668_PHAVU5.2e-4387.10Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G128400g PE=4 SV=1[more]
R0GXZ3_9BRAS5.2e-4388.42Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002235mg PE=4 SV=1[more]
BLAST of Cla012370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119135|ref|XP_008459495.1|6.9e-4995.83PREDICTED: uncharacterized protein LOC103498612 [Cucumis melo][more]
gi|449447523|ref|XP_004141517.1|1.0e-4795.79PREDICTED: uncharacterized protein LOC101218376 [Cucumis sativus][more]
gi|470107904|ref|XP_004290278.1|1.2e-4589.58PREDICTED: uncharacterized protein LOC101291295 [Fragaria vesca subsp. vesca][more]
gi|703110944|ref|XP_010099733.1|3.9e-4488.42hypothetical protein L484_025166 [Morus notabilis][more]
gi|595791257|ref|XP_007199377.1|8.7e-4486.32hypothetical protein PRUPE_ppa025630mg, partial [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008579DUF861_Cupin_3
IPR011051RmlC_Cupin_sf
IPR014710RmlC-like_jellyroll
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019252 starch biosynthetic process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU37374watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012370Cla012370.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU37374WMU37374transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008579Domain of unknown function DUF861, cupin-3PFAMPF05899Cupin_3coord: 20..93
score: 2.3
IPR011051RmlC-like cupin domainunknownSSF51182RmlC-like cupinscoord: 18..93
score: 3.56
IPR014710RmlC-like jelly roll foldGENE3DG3DSA:2.60.120.10coord: 7..95
score: 2.5
NoneNo IPR availablePANTHERPTHR33271FAMILY NOT NAMEDcoord: 1..95
score: 1.2
NoneNo IPR availablePANTHERPTHR33271:SF6SUBFAMILY NOT NAMEDcoord: 1..95
score: 1.2