Lsi09G016630 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAGAAAGAAAATAGGGAGAAAAATTCTAAAAGGTCGTATTAAAAAAAAAAAAGAAAATCCAAAGAAAACCCTATCCCTCATCCCTCTCTTCTATCTGCTGTTGGCCCTCCGAAAAACGCAGTACAACGTGATTCCGGCACAGCTACCCGCGGGCTTGAAGGTTGTGCGACGAGGCCCACAACCAGCACCGCCCCTTTCCAGCTATCAGAGATTTCAGCAAAGTGATTTCTCACTTGAGGCGAAATTCGGCAGCAACCCACAACCCGAATGGCCCCAAATCGTATTCCCCATAACCTGTAGAATTCAGGTTTGTGAGTTCGAACCTATTCGAATACATTTCAGCAGAGACTAAATTTTTGGATTAGTGGGTAGACTCTTTTCGAATTTACTTCACTGTGTTAAATCTGATTCTAACCATTGGGGCTCTTTTGTGTATAGGTTCGGATTGCGCGATTCAAGTTTAAGGTTGACATTGGGTAAGAGATAGTTGTCTTCACATTCTTGTAGATTCAATTCAATTCAGGTTTTAAACTGAATTTTAACCTTGGAATCTTGTCTAGAATAACTTAGCAGCGCTTTTGAAAGTGTAGTAAGTAGTTCTTGTGAAGTCTGTTTGCTGTTTGTTGTATGCTTTATATGCATTGGTAAGTTTATGACATAAATTGTATGCTACTGAAACTGTTATGTTTCTGGTCTGTATAAATATGCCATGATGTTGGGTTATGCCCTTGTGATGTTGAGATTTTTTTGCAACTATATGATAGTATGATGTTTATGTCCAAAACTTGTTCATGTTGTTTATGAACTGAATTGTGGCCTAGAAAGCATGTATAGAATGTGCACACATGGGACATTGTGAGATTGGTTAGTGAGAAAGGGGTTAGAGGACCTTGAATATGTGATAAAGGAAAGTGGGGAGAGTATCCGGGCGTTGGGTATAAATTGTCGATGGTTGGTTTTGTGTTAAGAAAAGTAAATGAATATCATGGACTCAAGTATAAAGGGTCGAGGATTGGTGTGTCACTATTGAATGTCAAGGCCTTGGGTATAGATGATCGAGAGTCAAACATGCCAATATTGGATACGAGGAGTATCAAGGTCTTGGCCTTGGGTATAAATTGTCAAGAGTCAGTGTGATGTATCTTTGGATAAGTATTGGGTCTTGGGTAGAAATGGTCAAGGGTTGATTGTGGAGGAGTTCTATAGAGAAGTGTTGAGGCTTTGGGTATGAATGGTCAAGAGTCAATGTGTCGCGAAAGAGTATGTCTTGAAGATGTAAAATGATGGAATAAAGTTGGAAAAAGAGCTAGAGAGACATGAGAATTTAGCGATGTCAATGTGTGAGAGCTTGTTAGAGCTTGAGTTAGAGGATGGGTATGATATTATGCATGTTGTAGAAATGATCCTGCATGATATTATTATGATTCATGAGTTGAGTATGCCACGCATATTACTTGTTTTCAGGTTTGCTGTGACTTGTGACAAGCATGAATCCATGATGTTATGATATATGTTGTATGCTATTGAAAGTTTAAGTTGAAAATTGATACAACTTGCCAAGTGAAACTATTTTTTTTTCCTTCCTAAAAGACTAATTATCAAATGCATTATTAATAGACCAATATAATTTATTCATGGGTGAAAGTACTTAAAAGTTTTTGCATACTAATGAGTGAAGTATGACCATTGTCAAGATTGTTCAAGAAAGTAGATCCATTTGTTAGATAAGAGAGTTTCCTAAATGAGAATGATCCTTGAGAATTGGGGATAAAACCTTTCTAACCAGAACAATCCCTAATTCACTATTACAATCATTGTTCAATATCAATGTCGATGTAAATTTATTGAAAAATTATATGAACAAGAAATCATTAAAATATTTAAATTTTAAAAAGTAGCATTATACCCTTTGTTTTTCATGTGACTTTGTTTCTTACACTCTGCAATGTTGCTTAAACAGGTAACTTAGATATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAAATTCCAAGTTATCTATTCCTAGCCATTCTGCCATCTTACGTAGTCCTCATTGCAGTATGCAAACTGCTAGCATTAGGAGTTCATGGGAACCTCGTTTAGAGCATCAGACATGTTACTATAGAGGTGCATACGAAACCTTCCATAATCTTTATTTATCTTTTATTTAATCTTTATATTGAACCAATTATTACTGCAGTTTTGGAGATATCTCATCTCCCTCTTTTTGTATGATCTCTTTTTTTTAAAAAAAATAATAATTAAAATAAATAAATAGATAAATAATTAAAAAAATTTATTACTGCGGTGGTAACATTAATATTAAGAAATTATTGTCTGACTTTTGTGATGCTGACTCTTGAAGAATTATACCATCCTTTTCAGTAATTGATTCACTGAATGGTGTGCTTCATTTTGTAATCCATTACTTTTCAAATGTAGGTCTCTTACCCTTAAAACTACGTGCTGCATCTTCCCCCCTCTTAAGTGGGGATCTAGGTGGCTTGCTACATACAATTCCCAGGTTACCAAGGCAAAAAAAGATTGGCATGACACCACGGGCAGCCAAAGATGTCCCTACGAGTTTTCGTTTCCCTCCAATGACCACGAAACCAAAATGGTGGTGGAGGACATTAGCATGCCTACCCTATCTAATGCCCCTTCACGAAACTTGGATGTACGCCGAAACAGCATACCACCTACACCCATTCCTGGAGGACTTTGAATTCTTCACATATCCCTTTCTCGGAGCCATTGGGAGACTACCAAGTTGGTTCTTGATGGCATATTTCTTTGTTGCCTATCTAGGAGTTGTAAGACGGAAGGAATGGCCTCACTTCTTTAGATTTCACGTTGTTATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGCCGTTGGATGCCCCTTGCAGTTTATTGGGGTAAATTAGGGATGCACTTTTGGACAGCTGTAGCATTCGCTTACCTGTTCACGGTCTTGGAATCCATACGCTGTGCTCTTGCAGGCATGTATGCTGATATCCCCTTTGTCTGTGATGCAGCCTACATCCAAATACCATATGATTAAGAACTCTTCGGTCTATAGTCGCGATGTGAGTAGAATGCCATGTAGACATGTAATTTTGCTTCTGCCCTTGTAAAGTGCAGTTGCAGATGAATATCGAACATTCTGAACTCTATTGACATTTTCTTTAGTTAGTCTTTGGGAAAACATGTATCTTTGTCTTTGTAGAAACTGAGGATTTTGTATGGAAGAGCTTGTGGGCGAAGTAAAGAAGGAAACTCATCCTCACTGCCTTTTGAATGTAAGTGTCTGTTCACTTTAACGTCAAACTTCTCTGCTGCCTTTGTGGGCTTTGATAAGAAAAGAATTTCCTTTACTCCAAACCATTTTAAATTTGAAAATACATTCAACTTTAGCAGCCCTAAAAA AAAGAAAGAAAATAGGGAGAAAAATTCTAAAAGGTCGTATTAAAAAAAAAAAAGAAAATCCAAAGAAAACCCTATCCCTCATCCCTCTCTTCTATCTGCTGTTGGCCCTCCGAAAAACGCAGTACAACGTGATTCCGGCACAGCTACCCGCGGGCTTGAAGGTTGTGCGACGAGGCCCACAACCAGCACCGCCCCTTTCCAGCTATCAGAGATTTCAGCAAAGTGATTTCTCACTTGAGGCGAAATTCGGCAGCAACCCACAACCCGAATGGCCCCAAATCGTATTCCCCATAACCTGTAGAATTCAGGTTCGGATTGCGCGATTCAAGTTTAAGGTTGACATTGGGTAAGAGATAGTTGTCTTCACATTCTTGTAGATTCAATTCAATTCAGGTAACTTAGATATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAAATTCCAAGTTATCTATTCCTAGCCATTCTGCCATCTTACGTAGTCCTCATTGCAGTATGCAAACTGCTAGCATTAGGAGTTCATGGGAACCTCGTTTAGAGCATCAGACATGTTACTATAGAGGTCTCTTACCCTTAAAACTACGTGCTGCATCTTCCCCCCTCTTAAGTGGGGATCTAGGTGGCTTGCTACATACAATTCCCAGGTTACCAAGGCAAAAAAAGATTGGCATGACACCACGGGCAGCCAAAGATGTCCCTACGAGTTTTCGTTTCCCTCCAATGACCACGAAACCAAAATGGTGGTGGAGGACATTAGCATGCCTACCCTATCTAATGCCCCTTCACGAAACTTGGATGTACGCCGAAACAGCATACCACCTACACCCATTCCTGGAGGACTTTGAATTCTTCACATATCCCTTTCTCGGAGCCATTGGGAGACTACCAAGTTGGTTCTTGATGGCATATTTCTTTGTTGCCTATCTAGGAGTTGTAAGACGGAAGGAATGGCCTCACTTCTTTAGATTTCACGTTGTTATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGCCGTTGGATGCCCCTTGCAGTTTATTGGGGTAAATTAGGGATGCACTTTTGGACAGCTGTAGCATTCGCTTACCTGTTCACGGTCTTGGAATCCATACGCTGTGCTCTTGCAGGCATGTATGCTGATATCCCCTTTGTCTGTGATGCAGCCTACATCCAAATACCATATGATTAAGAACTCTTCGGTCTATAGTCGCGATGTGAGTAGAATGCCATGTAGACATGTAATTTTGCTTCTGCCCTTGTAAAGTGCAGTTGCAGATGAATATCGAACATTCTGAACTCTATTGACATTTTCTTTAGTTAGTCTTTGGGAAAACATGTATCTTTGTCTTTGTAGAAACTGAGGATTTTGTATGGAAGAGCTTGTGGGCGAAGTAAAGAAGGAAACTCATCCTCACTGCCTTTTGAATGTAAGTGTCTGTTCACTTTAACGTCAAACTTCTCTGCTGCCTTTGTGGGCTTTGATAAGAAAAGAATTTCCTTTACTCCAAACCATTTTAAATTTGAAAATACATTCAACTTTAGCAGCCCTAAAAA ATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAAATTCCAAGTTATCTATTCCTAGCCATTCTGCCATCTTACGTAGTCCTCATTGCAGTATGCAAACTGCTAGCATTAGGAGTTCATGGGAACCTCGTTTAGAGCATCAGACATGTTACTATAGAGGTCTCTTACCCTTAAAACTACGTGCTGCATCTTCCCCCCTCTTAAGTGGGGATCTAGGTGGCTTGCTACATACAATTCCCAGGTTACCAAGGCAAAAAAAGATTGGCATGACACCACGGGCAGCCAAAGATGTCCCTACGAGTTTTCGTTTCCCTCCAATGACCACGAAACCAAAATGGTGGTGGAGGACATTAGCATGCCTACCCTATCTAATGCCCCTTCACGAAACTTGGATGTACGCCGAAACAGCATACCACCTACACCCATTCCTGGAGGACTTTGAATTCTTCACATATCCCTTTCTCGGAGCCATTGGGAGACTACCAAGTTGGTTCTTGATGGCATATTTCTTTGTTGCCTATCTAGGAGTTGTAAGACGGAAGGAATGGCCTCACTTCTTTAGATTTCACGTTGTTATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGCCGTTGGATGCCCCTTGCAGTTTATTGGGGTAAATTAGGGATGCACTTTTGGACAGCTGTAGCATTCGCTTACCTGTTCACGGTCTTGGAATCCATACGCTGTGCTCTTGCAGGCATGTATGCTGATATCCCCTTTGTCTGTGATGCAGCCTACATCCAAATACCATATGATTAA MILNGCTTPTGCFFSNSKLSIPSHSAILRSPHCSMQTASIRSSWEPRLEHQTCYYRGLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPKWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVLESIRCALAGMYADIPFVCDAAYIQIPYD
BLAST of Lsi09G016630 vs. Swiss-Prot
Match: TI201_ARATH (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1) HSP 1 Score: 382.1 bits (980), Expect = 5.0e-105 Identity = 182/213 (85.45%), Postives = 195/213 (91.55%), Query Frame = 1
BLAST of Lsi09G016630 vs. Swiss-Prot
Match: TIC20_PEA (Protein TIC 20, chloroplastic OS=Pisum sativum GN=TIC20 PE=1 SV=1) HSP 1 Score: 308.9 bits (790), Expect = 5.4e-83 Identity = 158/268 (58.96%), Postives = 185/268 (69.03%), Query Frame = 1
BLAST of Lsi09G016630 vs. Swiss-Prot
Match: TI204_ARATH (Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana GN=TIC20-IV PE=2 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 2.8e-39 Identity = 86/190 (45.26%), Postives = 118/190 (62.11%), Query Frame = 1
BLAST of Lsi09G016630 vs. TrEMBL
Match: A0A0A0KFP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108490 PE=4 SV=1) HSP 1 Score: 494.2 bits (1271), Expect = 1.0e-136 Identity = 225/268 (83.96%), Postives = 252/268 (94.03%), Query Frame = 1
BLAST of Lsi09G016630 vs. TrEMBL
Match: A9PAD4_POPTR (Tic20 family protein OS=Populus trichocarpa GN=POPTR_0002s03320g PE=2 SV=1) HSP 1 Score: 416.4 bits (1069), Expect = 2.7e-113 Identity = 208/273 (76.19%), Postives = 224/273 (82.05%), Query Frame = 1
BLAST of Lsi09G016630 vs. TrEMBL
Match: A0A061FS33_THECC (Translocon at the inner envelope membrane of chloroplasts 20 isoform 1 OS=Theobroma cacao GN=TCM_045299 PE=4 SV=1) HSP 1 Score: 414.8 bits (1065), Expect = 7.7e-113 Identity = 203/272 (74.63%), Postives = 225/272 (82.72%), Query Frame = 1
BLAST of Lsi09G016630 vs. TrEMBL
Match: A0A0D2TBL2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G213200 PE=4 SV=1) HSP 1 Score: 412.9 bits (1060), Expect = 2.9e-112 Identity = 204/271 (75.28%), Postives = 223/271 (82.29%), Query Frame = 1
BLAST of Lsi09G016630 vs. TrEMBL
Match: A0A0B0P675_GOSAR (Protein TIC 20-I, chloroplastic-like protein OS=Gossypium arboreum GN=F383_07397 PE=4 SV=1) HSP 1 Score: 411.8 bits (1057), Expect = 6.5e-112 Identity = 204/271 (75.28%), Postives = 222/271 (81.92%), Query Frame = 1
BLAST of Lsi09G016630 vs. TAIR10
Match: AT1G04940.1 (AT1G04940.1 translocon at the inner envelope membrane of chloroplasts 20) HSP 1 Score: 382.1 bits (980), Expect = 2.8e-106 Identity = 182/213 (85.45%), Postives = 195/213 (91.55%), Query Frame = 1
BLAST of Lsi09G016630 vs. TAIR10
Match: AT1G04945.3 (AT1G04945.3 HIT-type Zinc finger family protein) HSP 1 Score: 339.3 bits (869), Expect = 2.1e-93 Identity = 162/193 (83.94%), Postives = 175/193 (90.67%), Query Frame = 1
BLAST of Lsi09G016630 vs. TAIR10
Match: AT4G03320.1 (AT4G03320.1 translocon at the inner envelope membrane of chloroplasts 20-IV) HSP 1 Score: 163.7 bits (413), Expect = 1.6e-40 Identity = 86/190 (45.26%), Postives = 118/190 (62.11%), Query Frame = 1
BLAST of Lsi09G016630 vs. NCBI nr
Match: gi|659119592|ref|XP_008459737.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis melo]) HSP 1 Score: 504.2 bits (1297), Expect = 1.4e-139 Identity = 234/268 (87.31%), Postives = 253/268 (94.40%), Query Frame = 1
BLAST of Lsi09G016630 vs. NCBI nr
Match: gi|449445477|ref|XP_004140499.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis sativus]) HSP 1 Score: 494.2 bits (1271), Expect = 1.4e-136 Identity = 225/268 (83.96%), Postives = 252/268 (94.03%), Query Frame = 1
BLAST of Lsi09G016630 vs. NCBI nr
Match: gi|743851070|ref|XP_011028897.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Populus euphratica]) HSP 1 Score: 419.5 bits (1077), Expect = 4.5e-114 Identity = 209/273 (76.56%), Postives = 226/273 (82.78%), Query Frame = 1
BLAST of Lsi09G016630 vs. NCBI nr
Match: gi|224062091|ref|XP_002300750.1| (Tic20 family protein [Populus trichocarpa]) HSP 1 Score: 416.4 bits (1069), Expect = 3.8e-113 Identity = 208/273 (76.19%), Postives = 224/273 (82.05%), Query Frame = 1
BLAST of Lsi09G016630 vs. NCBI nr
Match: gi|590569506|ref|XP_007011089.1| (Translocon at the inner envelope membrane of chloroplasts 20 isoform 1 [Theobroma cacao]) HSP 1 Score: 414.8 bits (1065), Expect = 1.1e-112 Identity = 203/272 (74.63%), Postives = 225/272 (82.72%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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