Carg26671 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26671
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein TIC 20-I, chloroplastic-like
Location	Cucurbita_argyrosperma_scaffold_268 : 104524 .. 107321 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATCCCCTCTTTTCTTCTGCCCTTAGGTTTATCTTCAGTTGCTACCCATTTTCGCAGAAATCCATCACCAGCCAGTCTCCTTCTTCGACGTTAGCAGCTGGTCCTCCGACCAGTGACCCAGCCGCCGGCGACGAACTCGAGAAGTTTTCTTCTCTGGCGCGAGCACCTATCACGAGCCGCCACGCACAGGTCAGCAGTTGGTCCTTCGACGAACGCACGTCCACTGATTTCTCTTCCCAGGTGACATTCGGAAGCAACCCACAACCCGAATGCCTCAAATCGGATTCCCCATAACCTGTAAAAGTGAGATTTAGTTCGAACCTGTTCGAACACATTCCAGCAAAGACTAAAGCCTTGGATAGTGGGTGGGCTCTTTACGAGTTTACTAAGTGTATTAATTCTGATTCTAACTATTGGAAGTTTTTTGTATATAGGTTCGGACTGCTCGATTCAAGTTTAAGGTTGACATTGGGTAAGAAATAGCTGTCGACTAAGGTTTAAAACGGAACTTTAACCTTGAAATCTTGTCTACAATTTCTTATAGTAGCGCTTTATAACGTAAAGTAGTTCTTACTTGTGAAGTCTGTTCCTTGTTATTTTTATGATCTATAAAATTTAATTTGTATGCGATTATAAACTGTTTTGGGTTCTGGTAAGTATAATTATGCTGTGTTGTTGAGTTACATCCTTGTGATGATGGATATGTTGGATGTTGAAATTTTCTGAAATTATATGATAGTATGATGCTTATGTCGGAATCTGGTTCATGTTGTTAATTTTCAGAAATATGGCTCCGAAAGCATGTTAGAATGTGCATACATGGGAATTTGTGAGACTGATTGGTGAGGGAGGGTTAGAAGACCTTAAAAGTGAGGACAGTGTCTGGGCTTTGGATATAAATGATTGACGGTTGGTATTGTGTTATGGAAAGTAAGTGAATATCAGGCCTCAAGTATGAATGGTTAAGGATTGGTGTGTCACTATCGGGTGTCAAGGCCTGTAGTATATATGGTCGGGAGTCGACATGCCAATATTGGATAAGAGAAGTATCAAGGCCTTGGGTATAAACGCTCAAGAGCCGGTGTGATGAGCTTTTATACAAGCATTGGGGCCTTGGGTGTAAATGGTCGAGGGTTAAACGTTGCGTTTTGTAGAGAAGGGTTGAGGATTTTGGTATAAATGATCAGGAGTCAATGTGTCTTGCAAGAGTAAATCTCAAAGATGTGGAAAAGATTGAATGGAGTTAGAAAGAGCTAGAAAGAGCTAGAAAGAGCTATGAGAACTCAGTGATGTTCGAGAGTTTGTTAGAACTTGAGTTCGAGGATAGGCGTGCACGACATGAATATTGTGGATGATATGATTATGATTCATGAGCTGAATATGTCACATATATTTACTTGTTTTCATATTTGTTGTGAGAGCATGATGTGATGTATGTTGTATGCTGTTGGTAAAAATTGATACAACTTGCATTATAAATAGACCAATATAAATAAACCATGGGTGAAAGTATTTAAAAGTTCTTTCTCACTGAGTCAAGTATTACTATTATCAAGTTTGTTCAAGAAAGTAGAGCCATTTGTTAGATAAGAGAGTTACTAAGATGAGAATTGGGGATAAGAACTTTTCTAATCAGAACGATCCCTAGTTCATTTTTACAATGAACGTTTTCAATATCGATGTTGATGAAAATACCAAAAAAAATTGTAAATAAAGAATTCAAAAAAGAAAATTAAATTGGACTTAAGAACATAGGCATTGTTCCCTTTGTTTTTCATGCGGCTTTGTTCCTTACACTCTGCAATGATGTTGCTTAAACAGGTAACTTCGATATGATTCTCAATGGATGCACCACACCCACTGGCTTCTTCTTCTCAAATTCCAGGTTGTCTATCCCTAACCGTTCTGCGATCTCACGTAGTCCTGATTGCAGTATGCATGCTGCTGCTAGCATTAGAAGTTCAAGGGAACCTCATTTAGAGCATCAAACATGTCGCTATAGAGGTGCATACGAAGCCTTTCACAATCTTTATTCATCTTTTATTTGATCTTTTTATTGAAACAACTATAACTGTGGTGGAGACGTAAATGTAAAGAAATTACTGTCTGACTTTTGTGACAATTGCTTCTTGAAGTAATCCATTATTTTTCAAATGTAGGTGTCTTTCCCTTAAAACTAGGTGCTGGATCTTCCCATTTCTTAAGCGGGGATCTAGGTGGCTTGCTACATACAATCCCAAGGTTACCAAGGAAAAGAAATGTTGGCATGACACCACGGGCAGCCAAAGATATCCCTACGAGTTATCGTTTCCCTCCGATGACCACTAAACCAAAATGGTGGTGGAGGACATTGGCATGCTTACCCTATCTAATGCCCTTTCACGAAACTTGGATGTACTCTGAAACCGCGTACCACCTACACCCGTTCCTGGAGGACTTCGAATTCTTGACATATCCATTTCTCGAAGCCCTTGGACAACTACCAACTTGGTTCTTGATTGCATATTTCTTTATTGCCTATCTAGGAATTGTAAGACGTAAGGAATGGCCACACTTCTTTAGATTTCACGTAGTCATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGCCGTTGGATGCCCCTTGCAGTCTATTGGGGTAAAGTAGGGATGCACTTTTGGACAGCCGTATCGTTCGCTTACCTATTCACGGTTTTGGAAGCCGTTCGCTGTGCCCTTGCAGGCATGTATGCCGATATCCCTTTCTTCTGTGATGCAGCCTACATCCAAATTCCATACGATTAA

mRNA sequence

CTATCCCCTCTTTTCTTCTGCCCTTAGGTTTATCTTCAGTTGCTACCCATTTTCGCAGAAATCCATCACCAGCCAGTCTCCTTCTTCGACGTTAGCAGCTGGTCCTCCGACCAGTGACCCAGCCGCCGGCGACGAACTCGAGAAGTTTTCTTCTCTGGCGCGAGCACCTATCACGAGCCGCCACGCACAGGTCAGCAGTTGGTCCTTCGACGAACGCACGTCCACTGATTTCTCTTCCCAGGTGACATTCGGAAGCAACCCACAACCCGAATGCCTCAAATCGGATTCCCCATAACCTGTAAAAGTTCGGACTGCTCGATTCAAGTTTAAGGTTGACATTGGGTAACTTCGATATGATTCTCAATGGATGCACCACACCCACTGGCTTCTTCTTCTCAAATTCCAGGTTGTCTATCCCTAACCGTTCTGCGATCTCACGTAGTCCTGATTGCAGTATGCATGCTGCTGCTAGCATTAGAAGTTCAAGGGAACCTCATTTAGAGCATCAAACATGTCGCTATAGAGGTGTCTTTCCCTTAAAACTAGGTGCTGGATCTTCCCATTTCTTAAGCGGGGATCTAGGTGGCTTGCTACATACAATCCCAAGGTTACCAAGGAAAAGAAATGTTGGCATGACACCACGGGCAGCCAAAGATATCCCTACGAGTTATCGTTTCCCTCCGATGACCACTAAACCAAAATGGTGGTGGAGGACATTGGCATGCTTACCCTATCTAATGCCCTTTCACGAAACTTGGATGTACTCTGAAACCGCGTACCACCTACACCCGTTCCTGGAGGACTTCGAATTCTTGACATATCCATTTCTCGAAGCCCTTGGACAACTACCAACTTGGTTCTTGATTGCATATTTCTTTATTGCCTATCTAGGAATTGTAAGACGTAAGGAATGGCCACACTTCTTTAGATTTCACGTAGTCATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGCCGTTGGATGCCCCTTGCAGTCTATTGGGGTAAAGTAGGGATGCACTTTTGGACAGCCGTATCGTTCGCTTACCTATTCACGGTTTTGGAAGCCGTTCGCTGTGCCCTTGCAGGCATGTATGCCGATATCCCTTTCTTCTGTGATGCAGCCTACATCCAAATTCCATACGATTAA

Coding sequence (CDS)

ATGATTCTCAATGGATGCACCACACCCACTGGCTTCTTCTTCTCAAATTCCAGGTTGTCTATCCCTAACCGTTCTGCGATCTCACGTAGTCCTGATTGCAGTATGCATGCTGCTGCTAGCATTAGAAGTTCAAGGGAACCTCATTTAGAGCATCAAACATGTCGCTATAGAGGTGTCTTTCCCTTAAAACTAGGTGCTGGATCTTCCCATTTCTTAAGCGGGGATCTAGGTGGCTTGCTACATACAATCCCAAGGTTACCAAGGAAAAGAAATGTTGGCATGACACCACGGGCAGCCAAAGATATCCCTACGAGTTATCGTTTCCCTCCGATGACCACTAAACCAAAATGGTGGTGGAGGACATTGGCATGCTTACCCTATCTAATGCCCTTTCACGAAACTTGGATGTACTCTGAAACCGCGTACCACCTACACCCGTTCCTGGAGGACTTCGAATTCTTGACATATCCATTTCTCGAAGCCCTTGGACAACTACCAACTTGGTTCTTGATTGCATATTTCTTTATTGCCTATCTAGGAATTGTAAGACGTAAGGAATGGCCACACTTCTTTAGATTTCACGTAGTCATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGCCGTTGGATGCCCCTTGCAGTCTATTGGGGTAAAGTAGGGATGCACTTTTGGACAGCCGTATCGTTCGCTTACCTATTCACGGTTTTGGAAGCCGTTCGCTGTGCCCTTGCAGGCATGTATGCCGATATCCCTTTCTTCTGTGATGCAGCCTACATCCAAATTCCATACGATTAA

Protein sequence

MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTVLEAVRCALAGMYADIPFFCDAAYIQIPYD

Homology

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BLAST of Carg26671 vs. NCBI nr
Match: XP_023548580.1 (protein TIC 20-I, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023548581.1 protein TIC 20-I, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023548582.1 protein TIC 20-I, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023548584.1 protein TIC 20-I, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 564.3 bits (1453), Expect = 2.2e-157
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF
Sbjct: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR
Sbjct: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG
Sbjct: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV
Sbjct: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LEAVRCALAGMYADIPFFCDAAYIQIPYD
Sbjct: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 269

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BLAST of Carg26671 vs. NCBI nr
Match: XP_023006630.1 (protein TIC 20-I, chloroplastic-like [Cucurbita maxima] >XP_023006631.1 protein TIC 20-I, chloroplastic-like [Cucurbita maxima] >XP_023006632.1 protein TIC 20-I, chloroplastic-like [Cucurbita maxima] >XP_023006633.1 protein TIC 20-I, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 562.0 bits (1447), Expect = 1.1e-156
Identity = 268/269 (99.63%), Postives = 268/269 (99.63%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF
Sbjct: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKLGAGSSH LSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR
Sbjct: 61  PLKLGAGSSHLLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG
Sbjct: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV
Sbjct: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LEAVRCALAGMYADIPFFCDAAYIQIPYD
Sbjct: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 269

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BLAST of Carg26671 vs. NCBI nr
Match: XP_022959308.1 (protein TIC 20-I, chloroplastic-like [Cucurbita moschata] >XP_022959309.1 protein TIC 20-I, chloroplastic-like [Cucurbita moschata] >XP_022959310.1 protein TIC 20-I, chloroplastic-like [Cucurbita moschata] >XP_022959311.1 protein TIC 20-I, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 558.9 bits (1439), Expect = 9.3e-156
Identity = 267/269 (99.26%), Postives = 267/269 (99.26%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTGFFFSNSRLSIPNRSAISRS DCSMHAAASIRSSREPHLEHQTCRYRGVF
Sbjct: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSSDCSMHAAASIRSSREPHLEHQTCRYRGVF 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNV MTPRAAKDIPTSYRFPPMTTKPKWWWR
Sbjct: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVSMTPRAAKDIPTSYRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG
Sbjct: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV
Sbjct: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LEAVRCALAGMYADIPFFCDAAYIQIPYD
Sbjct: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 269

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BLAST of Carg26671 vs. NCBI nr
Match: XP_022151562.1 (protein TIC 20-I, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 472.6 bits (1215), Expect = 8.8e-130
Identity = 222/269 (82.53%), Postives = 242/269 (89.96%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTG+ FSNSR  IP+RS  SR+P CSM   A IRSS EP LEHQTC  +G+ 
Sbjct: 1   MILNGCTTPTGWCFSNSRFCIPSRSTASRTPGCSMQ-TARIRSSWEPRLEHQTCFSKGLL 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKL A SS  LSGDLGGLLHTIPRLPR++ +GMTP+A+KD+PTS+RFPPMTTKPKWWWR
Sbjct: 61  PLKLRAASSPLLSGDLGGLLHTIPRLPRQKRIGMTPQASKDVPTSFRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLACLPYLMP HETWMY+ETAYHLHPFLEDFEF TYPFL A+G+LP+WFL+AYFF+AYLG
Sbjct: 121 TLACLPYLMPLHETWMYAETAYHLHPFLEDFEFATYPFLGAIGRLPSWFLMAYFFVAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           +VRRKEWPHF RFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK GMHFWTAVSFAYLFTV
Sbjct: 181 VVRRKEWPHFLRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVSFAYLFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LE +RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 241 LECIRCALAGMYADIPFICDAAYIQIPYD 268

[Close]

BLAST of Carg26671 vs. NCBI nr
Match: XP_022151560.1 (protein TIC 20-I, chloroplastic isoform X1 [Momordica charantia] >XP_022151561.1 protein TIC 20-I, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 468.0 bits (1203), Expect = 2.2e-128
Identity = 222/270 (82.22%), Postives = 242/270 (89.63%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYR-GV 60
           MILNGCTTPTG+ FSNSR  IP+RS  SR+P CSM   A IRSS EP LEHQTC  + G+
Sbjct: 1   MILNGCTTPTGWCFSNSRFCIPSRSTASRTPGCSMQ-TARIRSSWEPRLEHQTCFSKVGL 60

Query: 61  FPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWW 120
            PLKL A SS  LSGDLGGLLHTIPRLPR++ +GMTP+A+KD+PTS+RFPPMTTKPKWWW
Sbjct: 61  LPLKLRAASSPLLSGDLGGLLHTIPRLPRQKRIGMTPQASKDVPTSFRFPPMTTKPKWWW 120

Query: 121 RTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYL 180
           RTLACLPYLMP HETWMY+ETAYHLHPFLEDFEF TYPFL A+G+LP+WFL+AYFF+AYL
Sbjct: 121 RTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFATYPFLGAIGRLPSWFLMAYFFVAYL 180

Query: 181 GIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFT 240
           G+VRRKEWPHF RFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK GMHFWTAVSFAYLFT
Sbjct: 181 GVVRRKEWPHFLRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVSFAYLFT 240

Query: 241 VLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           VLE +RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 241 VLECIRCALAGMYADIPFICDAAYIQIPYD 269

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BLAST of Carg26671 vs. TAIR10
Match: AT1G04940.1 (translocon at the inner envelope membrane of chloroplasts 20)

HSP 1 Score: 366.7 bits (940), Expect = 1.2e-101
Identity = 170/213 (79.81%), Postives = 190/213 (89.20%), Query Frame = 0


Query: 57  RGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPK 116
           RGV    L A SS  L+G+ G L  T+P LP +R   +TPRA+KD+P+S+RFPPMT KP+
Sbjct: 62  RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQ 121

Query: 117 WWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFI 176
           WWWRTLACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+
Sbjct: 122 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 181

Query: 177 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAY 236
           AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFWTAV+FAY
Sbjct: 182 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAY 241

Query: 237 LFTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LFTVLE++RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 242 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

[Close]

BLAST of Carg26671 vs. TAIR10
Match: AT1G04945.3 (HIT-type Zinc finger family protein)

HSP 1 Score: 326.2 bits (835), Expect = 1.8e-89
Identity = 151/193 (78.24%), Postives = 171/193 (88.60%), Query Frame = 0


Query: 57  RGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPK 116
           RGV    L A SS  L+G+ G L  T+P LP +R   +TPRA+KD+P+S+RFPPMT KP+
Sbjct: 62  RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQ 121

Query: 117 WWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFI 176
           WWWRTLACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+
Sbjct: 122 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 181

Query: 177 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAY 236
           AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFWTAV+FAY
Sbjct: 182 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAY 241

Query: 237 LFTVLEAVRCALA 250
           LFTVLE++RCALA
Sbjct: 242 LFTVLESIRCALA 254

[Close]

BLAST of Carg26671 vs. TAIR10
Match: AT4G03320.1 (translocon at the inner envelope membrane of chloroplasts 20-IV)

HSP 1 Score: 158.3 bits (399), Expect = 6.6e-39
Identity = 98/260 (37.69%), Postives = 141/260 (54.23%), Query Frame = 0


Query: 8   TPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVFPLKLGAG 67
           +P    F N R+  PN  + ++     +  +AS  S R P  E               A 
Sbjct: 23  SPISKKFVNPRVFFPNVDSSAK-----LRLSASSISRRCPR-EIAPLSATASVDFAAAAT 82

Query: 68  SSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWRTLACLPY 127
           SS+ L  +  GL    P L R R      R AKD     + P +  +P+WWWRTLAC+PY
Sbjct: 83  SSNQLFAN--GLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPY 142

Query: 128 LMPFHETWMYSETAYHLHPFLEDFEF---LTYPFLEALGQLPTWFLIAYFFIAYLGIVRR 187
           L+    +   S+  +++ PFLE  +    + Y    A+ + PTWF + Y ++ Y+ +V+ 
Sbjct: 143 LI----SLQISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKN 202

Query: 188 KEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTVLEAV 247
           KE PH+ RFH++MGMLLE ALQVI   S + PL  + G+ GM++W A+ F Y+  +LE +
Sbjct: 203 KELPHYLRFHMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECI 262

Query: 248 RCALAGMYADIPFFCDAAYI 265
           RCALAG+YA IPF  DAA I
Sbjct: 263 RCALAGVYAQIPFMTDAASI 270

[Close]

BLAST of Carg26671 vs. Swiss-Prot
Match: sp|Q8GZ79|TI201_ARATH (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 2.2e-100
Identity = 170/213 (79.81%), Postives = 190/213 (89.20%), Query Frame = 0


Query: 57  RGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPK 116
           RGV    L A SS  L+G+ G L  T+P LP +R   +TPRA+KD+P+S+RFPPMT KP+
Sbjct: 62  RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQ 121

Query: 117 WWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFI 176
           WWWRTLACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+
Sbjct: 122 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 181

Query: 177 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAY 236
           AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFWTAV+FAY
Sbjct: 182 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAY 241

Query: 237 LFTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LFTVLE++RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 242 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

[Close]

BLAST of Carg26671 vs. Swiss-Prot
Match: sp|Q9ZST8|TIC20_PEA (Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.9e-80
Identity = 145/233 (62.23%), Postives = 172/233 (73.82%), Query Frame = 0


Query: 37  AAASIRSSREPHLEHQTCRYRGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTP 96
           A +SIRS     LE++    RG+    + A SS  LSG    L  TIP LP       TP
Sbjct: 25  AVSSIRSFWGHSLENKP---RGMTFTDMSATSSLLLSGGQNFLSRTIPVLPTLHKSSTTP 84

Query: 97  RAAKDIPTSYRFPPMTTKPKWWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTY 156
           RA KD  + +RFPPMT KP+WWWRTL+C+PYL+PFH+ WMY+ TAYHLHPF+  F+ +TY
Sbjct: 85  RATKD-SSGFRFPPMTKKPRWWWRTLSCIPYLLPFHQAWMYARTAYHLHPFIPYFQPMTY 144

Query: 157 PFLEALGQLPTWFLIAYFFIAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMP 216
           PFL A+G LP W LIAYF IAYL IVRRKEWPHFFRFHV +GML+EIALQV G VSRWMP
Sbjct: 145 PFLMAIGTLPRWSLIAYFLIAYLTIVRRKEWPHFFRFHVAVGMLIEIALQVTGIVSRWMP 204

Query: 217 LAVYWGKVGMHFWTAVSFAYLFTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
            + YWGK+GMHFWT   F +LFT +E +RCAL GMYAD+PF CDAAYIQIP++
Sbjct: 205 RSFYWGKLGMHFWTTAFFVFLFTTIECIRCALVGMYADVPFVCDAAYIQIPHE 253

[Close]

BLAST of Carg26671 vs. Swiss-Prot
Match: sp|Q9ZQZ9|TI204_ARATH (Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-IV PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-37
Identity = 98/260 (37.69%), Postives = 141/260 (54.23%), Query Frame = 0


Query: 8   TPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVFPLKLGAG 67
           +P    F N R+  PN  + ++     +  +AS  S R P  E               A 
Sbjct: 23  SPISKKFVNPRVFFPNVDSSAK-----LRLSASSISRRCPR-EIAPLSATASVDFAAAAT 82

Query: 68  SSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWRTLACLPY 127
           SS+ L  +  GL    P L R R      R AKD     + P +  +P+WWWRTLAC+PY
Sbjct: 83  SSNQLFAN--GLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPY 142

Query: 128 LMPFHETWMYSETAYHLHPFLEDFEF---LTYPFLEALGQLPTWFLIAYFFIAYLGIVRR 187
           L+    +   S+  +++ PFLE  +    + Y    A+ + PTWF + Y ++ Y+ +V+ 
Sbjct: 143 LI----SLQISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKN 202

Query: 188 KEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTVLEAV 247
           KE PH+ RFH++MGMLLE ALQVI   S + PL  + G+ GM++W A+ F Y+  +LE +
Sbjct: 203 KELPHYLRFHMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECI 262

Query: 248 RCALAGMYADIPFFCDAAYI 265
           RCALAG+YA IPF  DAA I
Sbjct: 263 RCALAGVYAQIPFMTDAASI 270

[Close]

BLAST of Carg26671 vs. Swiss-Prot
Match: sp|P73387|YC60L_SYNY3 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.7e-04
Identity = 41/156 (26.28%), Postives = 72/156 (46.15%), Query Frame = 0


Query: 120 RTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYL 179
           R  + L Y++P  + +M+        P L+       P L+   Q P    I  F + ++
Sbjct: 12  RFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFI-IFIVLFM 71

Query: 180 GIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYL-- 239
            +VR     HF RF+ +  +L+ I L + G +  ++   V+    G+   T  +FA+L  
Sbjct: 72  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVF--GQGLVTETLYNFAFLGA 131

Query: 240 -----FTVLEAVRCALAGMYADIPFFCDAAYIQIPY 269
                F ++++V     G YA+IP   DAAY Q+ +
Sbjct: 132 LACGFFGIVQSV----LGRYAEIPTISDAAYSQVRF 160

[Close]

BLAST of Carg26671 vs. TrEMBL
Match: tr|A0A1S3CAY7|A0A1S3CAY7_CUCME (protein TIC 20-I, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103498780 PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 1.9e-128
Identity = 216/269 (80.30%), Postives = 244/269 (90.71%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTG FFSNS+LSIP+RS+I R+P CS    ASIRSS EPHL+HQTC Y G+ 
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPSRSSILRNPRCSTQ-TASIRSSWEPHLKHQTCYYGGLL 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKL A SS  LSGDLGGLL TIPRLP K+N+ MTPRA+KD+PTSYR+PPMTTKPKWWWR
Sbjct: 61  PLKLNAASSPLLSGDLGGLLSTIPRLPGKKNISMTPRASKDVPTSYRYPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLACLPYLMP HETWMY ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFLIAYFF+AYLG
Sbjct: 121 TLACLPYLMPLHETWMYGETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLIAYFFVAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           +VRRKEWPHF RFHVVMGML+EI+LQVIGT+SRW+P++VYWGK+GMHFWTAV FAY+FTV
Sbjct: 181 VVRRKEWPHFLRFHVVMGMLMEISLQVIGTMSRWLPISVYWGKLGMHFWTAVCFAYMFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LE +RCALAGMYAD+PF C+AAYIQIP+D
Sbjct: 241 LECMRCALAGMYADVPFVCNAAYIQIPFD 268

[Close]

BLAST of Carg26671 vs. TrEMBL
Match: tr|A0A0A0KFP3|A0A0A0KFP3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108490 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 3.2e-128
Identity = 219/269 (81.41%), Postives = 246/269 (91.45%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTG FFS+S+LSIP+RS+I R+P CS    ASIRSS EPHL+HQTC Y G+ 
Sbjct: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQ-TASIRSSWEPHLKHQTCYYGGLL 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKL A SS FLSGDLGGLLHTIPRLP K+ + M+PRAAKDIPTSYRFPPMTTKPKWWWR
Sbjct: 61  PLKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLA +PYLMPFHETWMYSETAYHLHPFLE+FEFLTYPFL ALG+LP+WFL+AYFFIAYLG
Sbjct: 121 TLASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           IVRRKEWPHFFRFHVVMGML+EIALQVIGTVSRW+PL++YWGK+GMHFWTAVSF ++FTV
Sbjct: 181 IVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           +E  RCALAGMYA++PF C+AAYIQIP+D
Sbjct: 241 VECARCALAGMYAEVPFACEAAYIQIPFD 268

[Close]

BLAST of Carg26671 vs. TrEMBL
Match: tr|A0A1Q3AMB6|A0A1Q3AMB6_CEPFO (Tic20 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_00409 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 9.6e-109
Identity = 194/272 (71.32%), Postives = 223/272 (81.99%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRL--SIPNRSAISRSPDCSMHAA-ASIRSSREPHLEHQTCRYR 60
           MILNG T P+G  F NSR    IPN    S +P   ++A  +SI SS +PHL  ++   +
Sbjct: 1   MILNGHTIPSGCQFMNSRAVKPIPNTFVFSCTPPLPVNATLSSITSSWQPHLNLKSWSSK 60

Query: 61  GVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKW 120
           G+  L   A S+  L GDLGGL HTIP LPR+      P+A+KD+P S+R+PPMT KP+W
Sbjct: 61  GLSVLPNSAASTPLLVGDLGGLFHTIPSLPRRHRSHFVPQASKDVPYSFRYPPMTKKPRW 120

Query: 121 WWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIA 180
           WWRTLACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+A
Sbjct: 121 WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA 180

Query: 181 YLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYL 240
           YLG+VRRKEWPHFFRFHVVMGMLLEI+LQVIGTVSRWMPLAVYWGK+GMHFWTAV+FAYL
Sbjct: 181 YLGVVRRKEWPHFFRFHVVMGMLLEISLQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240

Query: 241 FTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           FTVLE +RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 241 FTVLECIRCALAGMYADIPFVCDAAYIQIPYD 272

[Close]

BLAST of Carg26671 vs. TrEMBL
Match: tr|A9PAD4|A9PAD4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G031800v3 PE=2 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 6.9e-107
Identity = 192/272 (70.59%), Postives = 218/272 (80.15%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRL--SIPNRSAISRSPDCSMHAA-ASIRSSREPHLEHQTCRYR 60
           MILNGC  P+G  FS++R   ++P        P  +  AA  S R+S E HLE ++   R
Sbjct: 1   MILNGCAMPSGSAFSSTRTCKTMPGIMVSDHVPYTTARAALLSSRASLERHLESKSWSSR 60

Query: 61  GVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKW 120
           G   L L A S+  LSGD  G  H IP  PR+R     PRA+KD+P S+RFPPMT KP+W
Sbjct: 61  GFLSLHLSAASTPLLSGDYCGFSHYIPTFPRQRRSYSCPRASKDVPYSFRFPPMTKKPRW 120

Query: 121 WWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIA 180
           WWRTLACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+A
Sbjct: 121 WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA 180

Query: 181 YLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYL 240
           YLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK+GMHFWTAV+FAYL
Sbjct: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240

Query: 241 FTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           FTVLE +RCALAGMYAD+PF CDAAYIQIPYD
Sbjct: 241 FTVLECIRCALAGMYADVPFACDAAYIQIPYD 272

[Close]

BLAST of Carg26671 vs. TrEMBL
Match: tr|A0A0D2TBL2|A0A0D2TBL2_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G213200 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 2.0e-106
Identity = 189/271 (69.74%), Postives = 221/271 (81.55%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLS--IPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRG 60
           MIL+G   P G    +SRLS   P  S  +  P  S+  A   RSS +   + ++ + +G
Sbjct: 1   MILHGSCMPFGGVSMSSRLSKPFPCTSVFASIPRFSITDALYTRSSWKQDQDSKSWQVKG 60

Query: 61  VFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWW 120
           + PL L A S+  LSGDLGGL  T+P  PR+R+  + PRA+KD+P S+R+PPMT KPKWW
Sbjct: 61  LPPLHLSAASTPLLSGDLGGLALTVPSFPRRRSSSLVPRASKDVPYSFRYPPMTKKPKWW 120

Query: 121 WRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAY 180
           WR+LACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+AY
Sbjct: 121 WRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAY 180

Query: 181 LGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLF 240
           LG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLA+YWGK+GMHFWTAV+FAYLF
Sbjct: 181 LGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAIYWGKIGMHFWTAVAFAYLF 240

Query: 241 TVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           TVLE +RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 241 TVLECIRCALAGMYADIPFACDAAYIQIPYD 271

The following BLAST results are available for this feature:

BLAST of Carg26671 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548580.1	2.2e-157	100.00	protein TIC 20-I, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023548581....	[more]
XP_023006630.1	1.1e-156	99.63	protein TIC 20-I, chloroplastic-like [Cucurbita maxima] >XP_023006631.1 protein ...	[more]
XP_022959308.1	9.3e-156	99.26	protein TIC 20-I, chloroplastic-like [Cucurbita moschata] >XP_022959309.1 protei...	[more]
XP_022151562.1	8.8e-130	82.53	protein TIC 20-I, chloroplastic isoform X2 [Momordica charantia]	[more]
XP_022151560.1	2.2e-128	82.22	protein TIC 20-I, chloroplastic isoform X1 [Momordica charantia] >XP_022151561.1...	[more]

BLAST of Carg26671 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04940.1	1.2e-101	79.81	translocon at the inner envelope membrane of chloroplasts 20	[more]
AT1G04945.3	1.8e-89	78.24	HIT-type Zinc finger family protein	[more]
AT4G03320.1	6.6e-39	37.69	translocon at the inner envelope membrane of chloroplasts 20-IV	[more]

BLAST of Carg26671 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GZ79\|TI201_ARATH	2.2e-100	79.81	Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 ...	[more]
sp\|Q9ZST8\|TIC20_PEA	1.9e-80	62.23	Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1	[more]
sp\|Q9ZQZ9\|TI204_ARATH	1.2e-37	37.69	Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-IV PE=...	[more]
sp\|P73387\|YC60L_SYNY3	1.7e-04	26.28	Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ...	[more]

BLAST of Carg26671 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CAY7\|A0A1S3CAY7_CUCME	1.9e-128	80.30	protein TIC 20-I, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103498780 PE=...	[more]
tr\|A0A0A0KFP3\|A0A0A0KFP3_CUCSA	3.2e-128	81.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108490 PE=4 SV=1	[more]
tr\|A0A1Q3AMB6\|A0A1Q3AMB6_CEPFO	9.6e-109	71.32	Tic20 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_00...	[more]
tr\|A9PAD4\|A9PAD4_POPTR	6.9e-107	70.59	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G031800v3 PE=...	[more]
tr\|A0A0D2TBL2\|A0A0D2TBL2_GOSRA	2.0e-106	69.74	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G213200 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005691	Tic20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26671-RA	Carg26671-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	TIGRFAM	TIGR00994	TIGR00994	coord: 1..269 e-value: 9.0E-120 score: 397.4
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 89..262 e-value: 1.8E-72 score: 242.8
IPR005691	Chloroplast protein import component Tic20	PANTHER	PTHR33510	FAMILY NOT NAMED	coord: 3..269
None	No IPR available	PANTHER	PTHR33510:SF6	HIT-TYPE ZINC FINGER FAMILY PROTEIN-RELATED	coord: 3..269

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26671	Cla006685	Watermelon (97103) v1	carwmB0902
Carg26671	Csa6G108490	Cucumber (Chinese Long) v2	carcuB0915
Carg26671	MELO3C022242	Melon (DHL92) v3.5.1	carmeB0887
Carg26671	ClCG06G002850	Watermelon (Charleston Gray)	carwcgB0877
Carg26671	CSPI06G08640	Wild cucumber (PI 183967)	carcpiB0936
Carg26671	Cucsa.120750	Cucumber (Gy14) v1	carcgyB1018
Carg26671	CmaCh17G004980	Cucurbita maxima (Rimu)	carcmaB1239
Carg26671	Lsi09G016630	Bottle gourd (USVL1VR-Ls)	carlsiB821
Carg26671	Cp4.1LG12g04260	Cucurbita pepo (Zucchini)	carcpeB1250
Carg26671	MELO3C022242.2	Melon (DHL92) v3.6.1	carmedB0895
Carg26671	CsaV3_6G009010	Cucumber (Chinese Long) v3	carcucB0938
Carg26671	Cla97C06G112220	Watermelon (97103) v2	carwmbB0942
Carg26671	Bhi12G001931	Wax gourd	carwgoB1045

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26671	Cucumber (Gy14) v2	carcgybB0888
Carg26671	Cucurbita moschata (Rifu)	carcmoB1210
Carg26671	Bottle gourd (USVL1VR-Ls)	carlsiB820