Cla006685 (gene) Watermelon (97103) v1

Overview
NameCla006685
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTic20-like protein (AHRD V1 **-- Q2V9A0_SOLTU); contains Interpro domain(s) IPR005691 Chloroplast protein import component Tic20
LocationChr6 : 3113893 .. 3114922 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAAATTCCAAGTTATCTATTCCTAGCCGTTCTGCCATCTCACGAAGTCCTCACTGCAGTATGCAAACTGCTAGTATTAGGAGTTCATGCGAACCCCGTTTAGAGCATCAGACATGTTACTATAGAGGTGCATACTTCATTTCCCTCTTTTTGTATGATCTCTTTCATTCAATATAATCTTCATTTCGTATAGAAAAAGAATTATTAATGTGGTGGAAACATTAATATAAAGAAATTCTTGTCTGACTTTTGTGATGCTGACATCTTGAAAAGAGTTATACCATCCTTTTCAGTAATTGATTCTATGAATGGTGTGCTTCATTTTGTAATCCATTGTTTTTCAAATGTAGGTCTCTTACCCTTAAAACTACGTGCTGCATCTTCCCCTCTCCTAAGTGGGGATCTAGGTGGCTTGCTACATACAATCCCAAGGTTACCAAGGCAAAGAAAGATTGGCATGACACCACGGGCAGCCAAAGATGTCCCTACGAGTTTCCGTTTCCCTCCAATGACCACGAAACCAAAATGGTGGTGGAGGACATTAGCATGCCTGCCTTATTTAATGCCCCTTCACGAAACTTGGATGTATGCCGAAACAGCATACCACCTACACCCGTTCCTGGAGGACTTTGAATTCTTGACATATCCCTTTCTTGGAGCCATTGGGAGACTACCAAGTTGGTTCTTGATGGCATATTTTTTCGTTGCCTATCTAGGAGTTGTAAGACGGAAGGAATGGCCTCATTTCTTTCGATTTCACGTTGTTATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGTCGTTGGATGCCCCTTGCAGTCTATTGGGGTAAATTAGGGATGCACTTTTGGACAGCCGTAGCATTCGCTTACCTGTTCACGGTCTTGGAATCCATACGCTGTGCTCTTGCAGGCATGTATGCTGATATCCCCTTTGTCTGTGATGCAGCCTACATCCAAATACCATATGATTAA

mRNA sequence

ATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAAATTCCAAGTTATCTATTCCTAGCCGTTCTGCCATCTCACGAAGTCCTCACTGCAGTATGCAAACTGCTAGTATTAGGAGTTCATGCGAACCCCGTTTAGAGCATCAGACATGTTACTATAGAGGTCTCTTACCCTTAAAACTACGTGCTGCATCTTCCCCTCTCCTAAGTGGGGATCTAGGTGGCTTGCTACATACAATCCCAAGGTTACCAAGGCAAAGAAAGATTGGCATGACACCACGGGCAGCCAAAGATGTCCCTACGAGTTTCCGTTTCCCTCCAATGACCACGAAACCAAAATGGTGGTGGAGGACATTAGCATGCCTGCCTTATTTAATGCCCCTTCACGAAACTTGGATGTATGCCGAAACAGCATACCACCTACACCCGTTCCTGGAGGACTTTGAATTCTTGACATATCCCTTTCTTGGAGCCATTGGGAGACTACCAAGTTGGTTCTTGATGGCATATTTTTTCGTTGCCTATCTAGGAGTTGTAAGACGGAAGGAATGGCCTCATTTCTTTCGATTTCACGTTGTTATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGTCGTTGGATGCCCCTTGCAGTCTATTGGGGTAAATTAGGGATGCACTTTTGGACAGCCGTAGCATTCGCTTACCTGTTCACGGTCTTGGAATCCATACGCTGTGCTCTTGCAGGCATGTATGCTGATATCCCCTTTGTCTGTGATGCAGCCTACATCCAAATACCATATGATTAA

Coding sequence (CDS)

ATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAAATTCCAAGTTATCTATTCCTAGCCGTTCTGCCATCTCACGAAGTCCTCACTGCAGTATGCAAACTGCTAGTATTAGGAGTTCATGCGAACCCCGTTTAGAGCATCAGACATGTTACTATAGAGGTCTCTTACCCTTAAAACTACGTGCTGCATCTTCCCCTCTCCTAAGTGGGGATCTAGGTGGCTTGCTACATACAATCCCAAGGTTACCAAGGCAAAGAAAGATTGGCATGACACCACGGGCAGCCAAAGATGTCCCTACGAGTTTCCGTTTCCCTCCAATGACCACGAAACCAAAATGGTGGTGGAGGACATTAGCATGCCTGCCTTATTTAATGCCCCTTCACGAAACTTGGATGTATGCCGAAACAGCATACCACCTACACCCGTTCCTGGAGGACTTTGAATTCTTGACATATCCCTTTCTTGGAGCCATTGGGAGACTACCAAGTTGGTTCTTGATGGCATATTTTTTCGTTGCCTATCTAGGAGTTGTAAGACGGAAGGAATGGCCTCATTTCTTTCGATTTCACGTTGTTATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGTCGTTGGATGCCCCTTGCAGTCTATTGGGGTAAATTAGGGATGCACTTTTGGACAGCCGTAGCATTCGCTTACCTGTTCACGGTCTTGGAATCCATACGCTGTGCTCTTGCAGGCATGTATGCTGATATCCCCTTTGTCTGTGATGCAGCCTACATCCAAATACCATATGATTAA

Protein sequence

MILNGCTTPTGCFFSNSKLSIPSRSAISRSPHCSMQTASIRSSCEPRLEHQTCYYRGLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQRKIGMTPRAAKDVPTSFRFPPMTTKPKWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVLESIRCALAGMYADIPFVCDAAYIQIPYD
Homology
[Close]
BLAST of Cla006685 vs. Swiss-Prot
Match: TI201_ARATH (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 9.7e-109
Identity = 184/213 (86.38%), Postives = 194/213 (91.08%), Query Frame = 1 

Query: 56  RGLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQRKIGMTPRAAKDVPTSFRFPPMTTKPK 115
           RG+    L A+SS LL+G+ G L  T+P LP +RK  +TPRA+KDVP+SFRFPPMT KP+
Sbjct: 62  RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQ 121

Query: 116 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 175
           WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV
Sbjct: 122 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 181

Query: 176 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 235
           AYLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFWTAVAFAY
Sbjct: 182 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAY 241

Query: 236 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD
Sbjct: 242 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

[Close]
BLAST of Cla006685 vs. Swiss-Prot
Match: TIC20_PEA (Protein TIC 20, chloroplastic OS=Pisum sativum GN=TIC20 PE=1 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.2e-85
Identity = 158/268 (58.96%), Postives = 184/268 (68.66%), Query Frame = 1 

Query: 1   MILNGCTTPTGCFFSNSKLSIPSRSAISRSPHCSMQTASIRSSCEPRLEHQTCYYRGLLP 60
           MI NG T   G     +   IP++ A+S          SIRS     LE++    RG+  
Sbjct: 1   MIQNGGTVSQGSVLCYA-CQIPAKVAVS----------SIRSFWGHSLENKP---RGMTF 60

Query: 61  LKLRAASSPLLSGDLGGLLHTIPRLPRQRKIGMTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
             + A SS LLSG    L  TIP LP   K   TPRA KD  + FRFPPMT KP+WWWRT
Sbjct: 61  TDMSATSSLLLSGGQNFLSRTIPVLPTLHKSSTTPRATKD-SSGFRFPPMTKKPRWWWRT 120

Query: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGV 180
           L+C+PYL+P H+ WMYA TAYHLHPF+  F+ +TYPFL AIG LP W L+AYF +AYL +
Sbjct: 121 LSCIPYLLPFHQAWMYARTAYHLHPFIPYFQPMTYPFLMAIGTLPRWSLIAYFLIAYLTI 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVL 240
           VRRKEWPHFFRFHV +GML+EIALQV G VSRWMP + YWGKLGMHFWT   F +LFT +
Sbjct: 181 VRRKEWPHFFRFHVAVGMLIEIALQVTGIVSRWMPRSFYWGKLGMHFWTTAFFVFLFTTI 240

Query: 241 ESIRCALAGMYADIPFVCDAAYIQIPYD 269
           E IRCAL GMYAD+PFVCDAAYIQIP++
Sbjct: 241 ECIRCALVGMYADVPFVCDAAYIQIPHE 253

[Close]
BLAST of Cla006685 vs. Swiss-Prot
Match: TI204_ARATH (Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana GN=TIC20-IV PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.4e-43
Identity = 102/265 (38.49%), Postives = 142/265 (53.58%), Query Frame = 1 

Query: 8   TPTGCFFSNSKLSIPSRSAISRSPHCSMQTASIRSSCEPRLEHQTCYYRGLLPLKLRA-- 67
           +P    F N ++  P+   +  S    +  +SI   C           R + PL   A  
Sbjct: 23  SPISKKFVNPRVFFPN---VDSSAKLRLSASSISRRCP----------REIAPLSATASV 82

Query: 68  --ASSPLLSGDL--GGLLHTIPRLPRQRKIGMTPRAAKDVPTSFRFPPMTTKPKWWWRTL 127
             A++   S  L   GL    P L R R+     R AKD     + P +  +P+WWWRTL
Sbjct: 83  DFAAAATSSNQLFANGLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTL 142

Query: 128 ACLPYLMPLHETWMYAETAYHLHPFLEDFEFL---TYPFLGAIGRLPSWFLMAYFFVAYL 187
           AC+PYL+ L      ++  +++ PFLE  + +    Y   GAI R P+WF M Y ++ Y+
Sbjct: 143 ACVPYLISLQ----ISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYM 202

Query: 188 GVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFT 247
            VV+ KE PH+ RFH++MGMLLE ALQVI   S + PL  + G+ GM++W A+ F Y+  
Sbjct: 203 WVVKNKELPHYLRFHMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICL 262

Query: 248 VLESIRCALAGMYADIPFVCDAAYI 264
           +LE IRCALAG+YA IPF+ DAA I
Sbjct: 263 LLECIRCALAGVYAQIPFMTDAASI 270

[Close]
BLAST of Cla006685 vs. TrEMBL
Match: A0A0A0KFP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108490 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 1.8e-138
Identity = 224/268 (83.58%), Postives = 252/268 (94.03%), Query Frame = 1 

Query: 1   MILNGCTTPTGCFFSNSKLSIPSRSAISRSPHCSMQTASIRSSCEPRLEHQTCYYRGLLP 60
           MILNGCTTPTGCFFS+SKLSIPSRS+I R+P CS QTASIRSS EP L+HQTCYY GLLP
Sbjct: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LKLRAASSPLLSGDLGGLLHTIPRLPRQRKIGMTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           LKLRAASSP LSGDLGGLLHTIPRLP ++ I M+PRAAKD+PTS+RFPPMTTKPKWWWRT
Sbjct: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGV 180
           LA +PYLMP HETWMY+ETAYHLHPFLE+FEFLTYPFLGA+GRLPSWFLMAYFF+AYLG+
Sbjct: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVL 240
           VRRKEWPHFFRFHVVMGML+EIALQVIGTVSRW+PL++YWGK+GMHFWTAV+F ++FTV+
Sbjct: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240

Query: 241 ESIRCALAGMYADIPFVCDAAYIQIPYD 269
           E  RCALAGMYA++PF C+AAYIQIP+D
Sbjct: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268

[Close]
BLAST of Cla006685 vs. TrEMBL
Match: A9PAD4_POPTR (Tic20 family protein OS=Populus trichocarpa GN=POPTR_0002s03320g PE=2 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 2.3e-117
Identity = 208/272 (76.47%), Postives = 225/272 (82.72%), Query Frame = 1 

Query: 1   MILNGCTTPTGCFFSNSKL--SIPSRSAISRSPHCSMQTA--SIRSSCEPRLEHQTCYYR 60
           MILNGC  P+G  FS+++   ++P        P+ + + A  S R+S E  LE ++   R
Sbjct: 1   MILNGCAMPSGSAFSSTRTCKTMPGIMVSDHVPYTTARAALLSSRASLERHLESKSWSSR 60

Query: 61  GLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQRKIGMTPRAAKDVPTSFRFPPMTTKPKW 120
           G L L L AAS+PLLSGD  G  H IP  PRQR+    PRA+KDVP SFRFPPMT KP+W
Sbjct: 61  GFLSLHLSAASTPLLSGDYCGFSHYIPTFPRQRRSYSCPRASKDVPYSFRFPPMTKKPRW 120

Query: 121 WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA 180
           WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA
Sbjct: 121 WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA 180

Query: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240
           YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL
Sbjct: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240

Query: 241 FTVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           FTVLE IRCALAGMYAD+PF CDAAYIQIPYD
Sbjct: 241 FTVLECIRCALAGMYADVPFACDAAYIQIPYD 272

[Close]
BLAST of Cla006685 vs. TrEMBL
Match: A0A061FS33_THECC (Translocon at the inner envelope membrane of chloroplasts 20 isoform 1 OS=Theobroma cacao GN=TCM_045299 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 9.8e-116
Identity = 207/273 (75.82%), Postives = 226/273 (82.78%), Query Frame = 1 

Query: 1   MILNGCTTPTGCFFSNSKLSIPSR-----SAISRSPHCSMQTASIRSSCEPRLEHQTCYY 60
           MI +GCT P+GC   +S+LS P       ++ISR P        IRSS     + ++   
Sbjct: 1   MIPHGCTMPSGCASMSSRLSKPMPCSSVFASISRLPTTDA-LLRIRSSWMLDQDSKSWML 60

Query: 61  RGLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQRKIGMTPRAAKDVPTSFRFPPMTTKPK 120
           +GL PL L AAS+PLL GDLGGL  T+P LP +R   + PRA+KDVP SFR+P MT KPK
Sbjct: 61  KGLPPLHLSAASTPLLCGDLGGLSQTVPSLPTRRSSTLVPRASKDVPYSFRYPTMTKKPK 120

Query: 121 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 180
           WWWR+LACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV
Sbjct: 121 WWWRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 180

Query: 181 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 240
           AYLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY
Sbjct: 181 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 240

Query: 241 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           LFTVLE IRCALAGMY+DIPFVCDAAYIQIPYD
Sbjct: 241 LFTVLECIRCALAGMYSDIPFVCDAAYIQIPYD 272

[Close]
BLAST of Cla006685 vs. TrEMBL
Match: B9R7Z3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1595660 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 2.2e-115
Identity = 207/276 (75.00%), Postives = 227/276 (82.25%), Query Frame = 1 

Query: 1   MILNGCTTPT--GCFFSNSKLSIPSRSAISRS--PHCSMQTA--SIRSSCEP--RLEHQT 60
           MILNGC  P+  G    N++   P  +++  +  P  + + A   IR+SC P   LE + 
Sbjct: 1   MILNGCIVPSTSGYALINTRTCKPWPNSLVSACVPRLTTKAAFLDIRNSCTPVPNLESKF 60

Query: 61  CYYRGLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQRKIGMTPRAAKDVPTSFRFPPMTT 120
              RGL  L L AAS+PLLSGD GG+ H IP  PRQR+  + PRA+KDVP SFR+PPMT 
Sbjct: 61  WLSRGLPFLSLSAASTPLLSGDQGGIWHAIPSFPRQRRCYLCPRASKDVPYSFRYPPMTK 120

Query: 121 KPKWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAY 180
           KPKWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAY
Sbjct: 121 KPKWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAY 180

Query: 181 FFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVA 240
           FFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK+GMHFWTA+A
Sbjct: 181 FFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAIA 240

Query: 241 FAYLFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           FAYLFTVLE IRCALAGMYAD+PF CDAAYIQIPYD
Sbjct: 241 FAYLFTVLECIRCALAGMYADVPFACDAAYIQIPYD 276

[Close]
BLAST of Cla006685 vs. TrEMBL
Match: A0A0D2TBL2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G213200 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 3.7e-115
Identity = 205/271 (75.65%), Postives = 224/271 (82.66%), Query Frame = 1 

Query: 1   MILNGCTTPTGCFFSNSKLS--IPSRSAISRSPHCSMQTASI-RSSCEPRLEHQTCYYRG 60
           MIL+G   P G    +S+LS   P  S  +  P  S+  A   RSS +   + ++   +G
Sbjct: 1   MILHGSCMPFGGVSMSSRLSKPFPCTSVFASIPRFSITDALYTRSSWKQDQDSKSWQVKG 60

Query: 61  LLPLKLRAASSPLLSGDLGGLLHTIPRLPRQRKIGMTPRAAKDVPTSFRFPPMTTKPKWW 120
           L PL L AAS+PLLSGDLGGL  T+P  PR+R   + PRA+KDVP SFR+PPMT KPKWW
Sbjct: 61  LPPLHLSAASTPLLSGDLGGLALTVPSFPRRRSSSLVPRASKDVPYSFRYPPMTKKPKWW 120

Query: 121 WRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAY 180
           WR+LACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAY
Sbjct: 121 WRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAY 180

Query: 181 LGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLF 240
           LGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLA+YWGK+GMHFWTAVAFAYLF
Sbjct: 181 LGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAIYWGKIGMHFWTAVAFAYLF 240

Query: 241 TVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           TVLE IRCALAGMYADIPF CDAAYIQIPYD
Sbjct: 241 TVLECIRCALAGMYADIPFACDAAYIQIPYD 271

[Close]
BLAST of Cla006685 vs. NCBI nr
Match: gi|659119592|ref|XP_008459737.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis melo])

HSP 1 Score: 510.0 bits (1312), Expect = 2.5e-141
Identity = 233/268 (86.94%), Postives = 253/268 (94.40%), Query Frame = 1 

Query: 1   MILNGCTTPTGCFFSNSKLSIPSRSAISRSPHCSMQTASIRSSCEPRLEHQTCYYRGLLP 60
           MILNGCTTPTGCFFSNSKLSIPSRS+I R+P CS QTASIRSS EP L+HQTCYY GLLP
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LKLRAASSPLLSGDLGGLLHTIPRLPRQRKIGMTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           LKL AASSPLLSGDLGGLL TIPRLP ++ I MTPRA+KDVPTS+R+PPMTTKPKWWWRT
Sbjct: 61  LKLNAASSPLLSGDLGGLLSTIPRLPGKKNISMTPRASKDVPTSYRYPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGV 180
           LACLPYLMPLHETWMY ETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFL+AYFFVAYLGV
Sbjct: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLIAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVL 240
           VRRKEWPHF RFHVVMGML+EI+LQVIGT+SRW+P++VYWGKLGMHFWTAV FAY+FTVL
Sbjct: 181 VRRKEWPHFLRFHVVMGMLMEISLQVIGTMSRWLPISVYWGKLGMHFWTAVCFAYMFTVL 240

Query: 241 ESIRCALAGMYADIPFVCDAAYIQIPYD 269
           E +RCALAGMYAD+PFVC+AAYIQIP+D
Sbjct: 241 ECMRCALAGMYADVPFVCNAAYIQIPFD 268

[Close]
BLAST of Cla006685 vs. NCBI nr
Match: gi|449445477|ref|XP_004140499.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 500.0 bits (1286), Expect = 2.6e-138
Identity = 224/268 (83.58%), Postives = 252/268 (94.03%), Query Frame = 1 

Query: 1   MILNGCTTPTGCFFSNSKLSIPSRSAISRSPHCSMQTASIRSSCEPRLEHQTCYYRGLLP 60
           MILNGCTTPTGCFFS+SKLSIPSRS+I R+P CS QTASIRSS EP L+HQTCYY GLLP
Sbjct: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LKLRAASSPLLSGDLGGLLHTIPRLPRQRKIGMTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           LKLRAASSP LSGDLGGLLHTIPRLP ++ I M+PRAAKD+PTS+RFPPMTTKPKWWWRT
Sbjct: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGV 180
           LA +PYLMP HETWMY+ETAYHLHPFLE+FEFLTYPFLGA+GRLPSWFLMAYFF+AYLG+
Sbjct: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVL 240
           VRRKEWPHFFRFHVVMGML+EIALQVIGTVSRW+PL++YWGK+GMHFWTAV+F ++FTV+
Sbjct: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240

Query: 241 ESIRCALAGMYADIPFVCDAAYIQIPYD 269
           E  RCALAGMYA++PF C+AAYIQIP+D
Sbjct: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268

[Close]
BLAST of Cla006685 vs. NCBI nr
Match: gi|743851070|ref|XP_011028897.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Populus euphratica])

HSP 1 Score: 432.6 bits (1111), Expect = 5.1e-118
Identity = 211/273 (77.29%), Postives = 226/273 (82.78%), Query Frame = 1 

Query: 1   MILNGCTTPTGCFFSNSKLSIPSRSAISRSPHCSMQTA-----SIRSSCEPRLEHQTCYY 60
           MILNGC  P+G  FSN++ +  + + I  S H    TA     S R+S E  LE ++   
Sbjct: 1   MILNGCAMPSGSAFSNTR-TCKTMTGIMVSDHVPHTTARAALLSSRASLERHLESKSWSS 60

Query: 61  RGLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQRKIGMTPRAAKDVPTSFRFPPMTTKPK 120
           RG L L L AAS+PLLSGD  G  H IP  PRQR+   +PRA+KDVP SFRFPPMT KP+
Sbjct: 61  RGFLSLHLSAASTPLLSGDYCGFSHYIPTFPRQRRSYSSPRASKDVPYSFRFPPMTKKPR 120

Query: 121 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 180
           WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV
Sbjct: 121 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 180

Query: 181 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 240
           AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY
Sbjct: 181 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 240

Query: 241 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           LFTVLE IRCALAGMYAD+PF CDAAYIQIPYD
Sbjct: 241 LFTVLECIRCALAGMYADVPFACDAAYIQIPYD 272

[Close]
BLAST of Cla006685 vs. NCBI nr
Match: gi|224062091|ref|XP_002300750.1| (Tic20 family protein [Populus trichocarpa])

HSP 1 Score: 429.9 bits (1104), Expect = 3.3e-117
Identity = 208/272 (76.47%), Postives = 225/272 (82.72%), Query Frame = 1 

Query: 1   MILNGCTTPTGCFFSNSKL--SIPSRSAISRSPHCSMQTA--SIRSSCEPRLEHQTCYYR 60
           MILNGC  P+G  FS+++   ++P        P+ + + A  S R+S E  LE ++   R
Sbjct: 1   MILNGCAMPSGSAFSSTRTCKTMPGIMVSDHVPYTTARAALLSSRASLERHLESKSWSSR 60

Query: 61  GLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQRKIGMTPRAAKDVPTSFRFPPMTTKPKW 120
           G L L L AAS+PLLSGD  G  H IP  PRQR+    PRA+KDVP SFRFPPMT KP+W
Sbjct: 61  GFLSLHLSAASTPLLSGDYCGFSHYIPTFPRQRRSYSCPRASKDVPYSFRFPPMTKKPRW 120

Query: 121 WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA 180
           WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA
Sbjct: 121 WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA 180

Query: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240
           YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL
Sbjct: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240

Query: 241 FTVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           FTVLE IRCALAGMYAD+PF CDAAYIQIPYD
Sbjct: 241 FTVLECIRCALAGMYADVPFACDAAYIQIPYD 272

[Close]
BLAST of Cla006685 vs. NCBI nr
Match: gi|590569506|ref|XP_007011089.1| (Translocon at the inner envelope membrane of chloroplasts 20 isoform 1 [Theobroma cacao])

HSP 1 Score: 424.5 bits (1090), Expect = 1.4e-115
Identity = 207/273 (75.82%), Postives = 226/273 (82.78%), Query Frame = 1 

Query: 1   MILNGCTTPTGCFFSNSKLSIPSR-----SAISRSPHCSMQTASIRSSCEPRLEHQTCYY 60
           MI +GCT P+GC   +S+LS P       ++ISR P        IRSS     + ++   
Sbjct: 1   MIPHGCTMPSGCASMSSRLSKPMPCSSVFASISRLPTTDA-LLRIRSSWMLDQDSKSWML 60

Query: 61  RGLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQRKIGMTPRAAKDVPTSFRFPPMTTKPK 120
           +GL PL L AAS+PLL GDLGGL  T+P LP +R   + PRA+KDVP SFR+P MT KPK
Sbjct: 61  KGLPPLHLSAASTPLLCGDLGGLSQTVPSLPTRRSSTLVPRASKDVPYSFRYPTMTKKPK 120

Query: 121 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 180
           WWWR+LACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV
Sbjct: 121 WWWRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 180

Query: 181 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 240
           AYLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY
Sbjct: 181 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 240

Query: 241 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           LFTVLE IRCALAGMY+DIPFVCDAAYIQIPYD
Sbjct: 241 LFTVLECIRCALAGMYSDIPFVCDAAYIQIPYD 272

The following BLAST results are available for this feature:
BLAST of Cla006685 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TI201_ARATH9.7e-10986.38Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1[more]
TIC20_PEA1.2e-8558.96Protein TIC 20, chloroplastic OS=Pisum sativum GN=TIC20 PE=1 SV=1[more]
TI204_ARATH5.4e-4338.49Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana GN=TIC20-IV PE=2 SV=1[more]
BLAST of Cla006685 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFP3_CUCSA1.8e-13883.58Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108490 PE=4 SV=1[more]
A9PAD4_POPTR2.3e-11776.47Tic20 family protein OS=Populus trichocarpa GN=POPTR_0002s03320g PE=2 SV=1[more]
A0A061FS33_THECC9.8e-11675.82Translocon at the inner envelope membrane of chloroplasts 20 isoform 1 OS=Theobr... [more]
B9R7Z3_RICCO2.2e-11575.00Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1595660 PE=4 SV=1[more]
A0A0D2TBL2_GOSRA3.7e-11575.65Uncharacterized protein OS=Gossypium raimondii GN=B456_011G213200 PE=4 SV=1[more]
BLAST of Cla006685 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119592|ref|XP_008459737.1|2.5e-14186.94PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis melo][more]
gi|449445477|ref|XP_004140499.1|2.6e-13883.58PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis sativus][more]
gi|743851070|ref|XP_011028897.1|5.1e-11877.29PREDICTED: protein TIC 20-I, chloroplastic-like [Populus euphratica][more]
gi|224062091|ref|XP_002300750.1|3.3e-11776.47Tic20 family protein [Populus trichocarpa][more]
gi|590569506|ref|XP_007011089.1|1.4e-11575.82Translocon at the inner envelope membrane of chloroplasts 20 isoform 1 [Theobrom... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0045037 protein import into chloroplast stroma
biological_process GO:0006626 protein targeting to mitochondrion
cellular_component GO:0005575 cellular_component
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0008565 protein transporter activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU16048watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU46210watermelon EST collection version 2.0transcribed_cluster
WMU46911watermelon EST collection version 2.0transcribed_cluster
WMU48422watermelon EST collection version 2.0transcribed_cluster
WMU57698watermelon EST collection version 2.0transcribed_cluster
WMU66018watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006685Cla006685.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU16048WMU16048transcribed_cluster
WMU46210WMU46210transcribed_cluster
WMU57698WMU57698transcribed_cluster
WMU66018WMU66018transcribed_cluster
WMU46911WMU46911transcribed_cluster
WMU48422WMU48422transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 87..261
score: 4.8
IPR005691Chloroplast protein import component Tic20TIGRFAMsTIGR00994TIGR00994coord: 1..268
score: 1.7E
NoneNo IPR availablePANTHERPTHR33510FAMILY NOT NAMEDcoord: 1..268
score: 2.1E
NoneNo IPR availablePANTHERPTHR33510:SF6PROTEIN TIC 20-I, CHLOROPLASTICcoord: 1..268
score: 2.1E