Cp4.1LG12g04260 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g04260
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Protein TIC 20, chloroplastic
Location	Cp4.1LG12 : 3231353 .. 3234705 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTATTTTTTATTTTTTATTTTTATTTTTTAAAAAACCCTATCCCCTCTTTTCTTCTGCCCTTAGGTTTATCTTCAGTCGCTACCCATTTTCGCAGAAATCCGTCACCAGCCAGTCTCCTTCTTCGACGTTAGCAGCTGGTCCTCCGACCAGTGACCCAGCCGCCGGCGACGGACTTGAGAAGTTTTCTTCTCTGGCGCGAGCACCTATCACGAGCCGCAACGCACAGGTCAGCAGCTGGTCCTTCGACGAACGCACGTCCACTGATTTCTCTTCCGAGGTGACATTCGGCAGCAACCCACAACCCGAATGCCTCAAATCGGATTCCCCATAACCTGTAAAAGTGAGATTTAGTTCGAACCTGTTCGAACACATTCCAGCAAAGACTAAAGCCTTGGATAGTGGGTGGGCTCTTTACGAGTTTACTAAGTGTATTAATTCTGATTCTAACTATTGGAAGTTTTTTGTATATAGGTTCGGACTGCTCGATTCAAGTTTAAGGTTGACATTGGGTAAGAAATAGCTGTCGATTAAGGTTTAAAACGGAACTTTAACCTTGAAATCTTGTCTACAATTTCTTATAGTAGCGCTTTATAACGTAAAGTAGTTCTTACTTGTGAATTCTGTTCCTTGTTATTTTTATGATCTATAAAATTTAATTTGTATGCGATTATAAACTGTTGTGGGTTCTGGTAAGTATAATTATGCTGTAATTATATGATATACTATCATAGTATGATGCTTGTGATGATGGACATGTTGGATGTTGAAATTTTCTGAAATTATATGATAGTATGATGCTTATGTCGGAAGCAGGTTCATGTTGTTAATTTTCAGAAATATGGCTCAGAAAGCATGTTAGAATGTGCATACATGAGAATTTGGGAGACTGATTAGTGAGGGAGGGTTAGAAGACCTTAAAAATGAGGACAATGTCTGGGCTTTGGATATAAATGATTGACGGTTGGTATTGTGTTGAGGAAAGTAAGTGGATATCAGGCCTCAAGTATGAATTGTTAAGGATTGGCGTGTCACTTTTGGGTGTCAAGGCCTGAAGTATATATGGTCGGGAGTCAACATGCCAATATTGGATAAGAGGAGTAACAAGGCCTTGGGTATAAACACTCAAGAGCCGGTGTGATGAGCTTTTAGATAAGCATTGCGGCCCTGGGTGTAAATGGTCGAGGGTTGAACGTTGCGTTTTGTAGAGAAGTGTTGAGGATTTCGGTATAAATGATCAGGAGTCAATGTGTCTTGCAAGAGTAAATCTCAAAGATGTGGAAAAGATTGAATGGAGTTAGAAAGAGCTAGAAAGAGCTATGAGAACTCACTGATGTTCGAGAGTTTGTTAGAACTTGAGTTCAAGGATAGGCATGCATGACGTGAATATTGTGGACGAGATGATTATGATTCATGAGCTGAATATGTCACATATATTTACTTGTTTTCATATTTGTTGTGAGAGCATGATGTGATGTATGTTGTATGCTGTTGGTGAAAATTGATACAACTTGCATTATAAATAGACCAATATAAATAAACCATGGGTGAAAGTATTTAAAAGTTCTTGCTCACTGAGTCAAGTATTACTATTATCAAGTTTGTTTAAGAAAGTAGAGCCATTTGTTAGATAAGAGAGTTACTAAGATGAGAATGATCCTTGAGAATTGGGGATAAGAACTTTTCTAATCAGAACGATTCCTAGTTCATTTTTAATGAACGTTTTCAATATCGATGTTGATGAAAATACCAAAAAAATTGTAAATAAAGAATTCAAAAAAGAAAATTAAATTGGACTTAAGAACATAAGCATTGTTCCCTTTGTTTTTCATGCGGCTTTGTTCTTTACACTCTGCAATGATGTTGCTTAAACAGGTAACTTCGATATGATTCTCAATGGATGCACCACACCCACTGGCTTCTTCTTCTCAAATTCCAGGTTGTCTATTCCTAACCGTTCTGCGATCTCACGTAGTCCTGATTGCAGTATGCATGCTGCTGCTAGCATTAGAAGTTCAAGGGAACCTCATTTAGAGCATCAAACATGTCGCTATAGAGGTGCATACGAAGCCTTTCACAATCTTTATTCATCTTTTATTTGATCTTTTTATTGAAACAACTATAACTGTGGTGGAGACGTAAATGTAAAGAAATTACTGTCTGACTTTTGTGACCATTGCTTCTTGAAGTAATCCATTATTTTTCAAATGTAGGTGTCTTTCCCTTAAAACTAGGTGCTGGATCTTCCCATTTCTTAAGCGGGGATCTAGGTGGCTTGCTACATACAATCCCAAGGTTACCAAGGAAAAGAAATGTTGGCATGACACCACGGGCAGCCAAAGATATCCCTACGAGTTATCGTTTCCCTCCGATGACCACTAAACCAAAATGGTGGTGGAGGACATTGGCATGCTTACCCTATCTAATGCCCTTTCACGAAACTTGGATGTACTCTGAAACAGCGTACCACCTACACCCGTTCCTGGAGGACTTCGAATTCTTGACATATCCATTTCTCGAAGCCCTTGGACAACTACCAACTTGGTTCTTGATTGCATATTTCTTTATTGCCTATCTAGGAATTGTAAGACGTAAGGAATGGCCACACTTCTTTAGATTTCACGTAGTCATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGCCGTTGGATGCCCCTTGCAGTCTATTGGGGTAAAGTAGGGATGCACTTTTGGACAGCCGTATCGTTCGCTTACCTATTCACGGTTTTGGAAGCCGTTCGCTGTGCCCTTGCAGGCATGTATGCCGATATCCCTTTCTTCTGTGATGCAGCCTACATCCAAATTCCATACGATTAAGAACTCTTCGGTTTATAGTCTCGGTGCGAGTAGACTGTGATATGGACATGTACTTTTGTTACTGCCCTTGTAAAGTGCAGTCGGAAATGAACCTCAAACATTCTGAACTCTATTTGCATTTTGTTGATGAGCTTGTGGGCGAAGTAAAGATGGAAATTTATCCTTGCCGCCTTTTGAGGGTAAGTCTCTTCACTGCTTTATTGTTTGTTTCTTCTCTTAGACTCATTGCCTTTGCTCTTTAACATTCACCTTATACATTTTTTGGTTCTTTTTCCAGCTTAGTTTTCATTGTTCGTTACAGTATTGCTATATTCAGTGACCCATCTTTTAGTTGAGGTGTCGTTTGGTGTAGTTTGGTGTAGATTGGTCGGTTCGTCTAGTCGTAGTGACACTCGGATTGATTATGCTAGTTTGAATACAATAATGTTGGACAAAGAATTGCCCAGATATTGAAATGATCAACCTTTGTAAATTGGTTATGCTGAAACGTCCATTGAAATC

mRNA sequence

ATTTTATTTTTTATTTTTTATTTTTATTTTTTAAAAAACCCTATCCCCTCTTTTCTTCTGCCCTTAGGTTTATCTTCAGTCGCTACCCATTTTCGCAGAAATCCGTCACCAGCCAGTCTCCTTCTTCGACGTTAGCAGCTGGTCCTCCGACCAGTGACCCAGCCGCCGGCGACGGACTTGAGAAGTTTTCTTCTCTGGCGCGAGCACCTATCACGAGCCGCAACGCACAGGTCAGCAGCTGGTCCTTCGACGAACGCACGTCCACTGATTTCTCTTCCGAGGTGACATTCGGCAGCAACCCACAACCCGAATGCCTCAAATCGGATTCCCCATAACCTGTAAAAGTTCGGACTGCTCGATTCAAGTTTAAGGTTGACATTGGGTAACTTCGATATGATTCTCAATGGATGCACCACACCCACTGGCTTCTTCTTCTCAAATTCCAGGTTGTCTATTCCTAACCGTTCTGCGATCTCACGTAGTCCTGATTGCAGTATGCATGCTGCTGCTAGCATTAGAAGTTCAAGGGAACCTCATTTAGAGCATCAAACATGTCGCTATAGAGGTGTCTTTCCCTTAAAACTAGGTGCTGGATCTTCCCATTTCTTAAGCGGGGATCTAGGTGGCTTGCTACATACAATCCCAAGGTTACCAAGGAAAAGAAATGTTGGCATGACACCACGGGCAGCCAAAGATATCCCTACGAGTTATCGTTTCCCTCCGATGACCACTAAACCAAAATGGTGGTGGAGGACATTGGCATGCTTACCCTATCTAATGCCCTTTCACGAAACTTGGATGTACTCTGAAACAGCGTACCACCTACACCCGTTCCTGGAGGACTTCGAATTCTTGACATATCCATTTCTCGAAGCCCTTGGACAACTACCAACTTGGTTCTTGATTGCATATTTCTTTATTGCCTATCTAGGAATTGTAAGACGTAAGGAATGGCCACACTTCTTTAGATTTCACGTAGTCATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGCCGTTGGATGCCCCTTGCAGTCTATTGGGGTAAAGTAGGGATGCACTTTTGGACAGCCGTATCGTTCGCTTACCTATTCACGGTTTTGGAAGCCGTTCGCTGTGCCCTTGCAGGCATGTATGCCGATATCCCTTTCTTCTGTGATGCAGCCTACATCCAAATTCCATACGATTAAGAACTCTTCGGTTTATAGTCTCGGTGCGAGTAGACTGTGATATGGACATGTACTTTTGTTACTGCCCTTGTAAAGTGCAGTCGGAAATGAACCTCAAACATTCTGAACTCTATTTGCATTTTGTTGATGAGCTTGTGGGCGAAGTAAAGATGGAAATTTATCCTTGCCGCCTTTTGAGGGTAAGTCTCTTCACTGCTTTATTGTTTGTTTCTTCTCTTAGACTCATTGCCTTTGCTCTTTAACATTCACCTTATACATTTTTTGGTTCTTTTTCCAGCTTAGTTTTCATTGTTCGTTACAGTATTGCTATATTCAGTGACCCATCTTTTAGTTGAGGTGTCGTTTGGTGTAGTTTGGTGTAGATTGGTCGGTTCGTCTAGTCGTAGTGACACTCGGATTGATTATGCTAGTTTGAATACAATAATGTTGGACAAAGAATTGCCCAGATATTGAAATGATCAACCTTTGTAAATTGGTTATGCTGAAACGTCCATTGAAATC

Coding sequence (CDS)

ATGATTCTCAATGGATGCACCACACCCACTGGCTTCTTCTTCTCAAATTCCAGGTTGTCTATTCCTAACCGTTCTGCGATCTCACGTAGTCCTGATTGCAGTATGCATGCTGCTGCTAGCATTAGAAGTTCAAGGGAACCTCATTTAGAGCATCAAACATGTCGCTATAGAGGTGTCTTTCCCTTAAAACTAGGTGCTGGATCTTCCCATTTCTTAAGCGGGGATCTAGGTGGCTTGCTACATACAATCCCAAGGTTACCAAGGAAAAGAAATGTTGGCATGACACCACGGGCAGCCAAAGATATCCCTACGAGTTATCGTTTCCCTCCGATGACCACTAAACCAAAATGGTGGTGGAGGACATTGGCATGCTTACCCTATCTAATGCCCTTTCACGAAACTTGGATGTACTCTGAAACAGCGTACCACCTACACCCGTTCCTGGAGGACTTCGAATTCTTGACATATCCATTTCTCGAAGCCCTTGGACAACTACCAACTTGGTTCTTGATTGCATATTTCTTTATTGCCTATCTAGGAATTGTAAGACGTAAGGAATGGCCACACTTCTTTAGATTTCACGTAGTCATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGCCGTTGGATGCCCCTTGCAGTCTATTGGGGTAAAGTAGGGATGCACTTTTGGACAGCCGTATCGTTCGCTTACCTATTCACGGTTTTGGAAGCCGTTCGCTGTGCCCTTGCAGGCATGTATGCCGATATCCCTTTCTTCTGTGATGCAGCCTACATCCAAATTCCATACGATTAA

Protein sequence

MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTVLEAVRCALAGMYADIPFFCDAAYIQIPYD

Homology

[Close]

BLAST of Cp4.1LG12g04260 vs. Swiss-Prot
Match: TI201_ARATH (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 2.2e-100
Identity = 170/213 (79.81%), Postives = 190/213 (89.20%), Query Frame = 1


Query: 57  RGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPK 116
           RGV    L A SS  L+G+ G L  T+P LP +R   +TPRA+KD+P+S+RFPPMT KP+
Sbjct: 62  RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQ 121

Query: 117 WWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFI 176
           WWWRTLACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+
Sbjct: 122 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 181

Query: 177 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAY 236
           AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFWTAV+FAY
Sbjct: 182 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAY 241

Query: 237 LFTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LFTVLE++RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 242 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

[Close]

BLAST of Cp4.1LG12g04260 vs. Swiss-Prot
Match: TIC20_PEA (Protein TIC 20, chloroplastic OS=Pisum sativum GN=TIC20 PE=1 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.9e-80
Identity = 145/233 (62.23%), Postives = 172/233 (73.82%), Query Frame = 1


Query: 37  AAASIRSSREPHLEHQTCRYRGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTP 96
           A +SIRS     LE++    RG+    + A SS  LSG    L  TIP LP       TP
Sbjct: 25  AVSSIRSFWGHSLENKP---RGMTFTDMSATSSLLLSGGQNFLSRTIPVLPTLHKSSTTP 84

Query: 97  RAAKDIPTSYRFPPMTTKPKWWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTY 156
           RA KD  + +RFPPMT KP+WWWRTL+C+PYL+PFH+ WMY+ TAYHLHPF+  F+ +TY
Sbjct: 85  RATKD-SSGFRFPPMTKKPRWWWRTLSCIPYLLPFHQAWMYARTAYHLHPFIPYFQPMTY 144

Query: 157 PFLEALGQLPTWFLIAYFFIAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMP 216
           PFL A+G LP W LIAYF IAYL IVRRKEWPHFFRFHV +GML+EIALQV G VSRWMP
Sbjct: 145 PFLMAIGTLPRWSLIAYFLIAYLTIVRRKEWPHFFRFHVAVGMLIEIALQVTGIVSRWMP 204

Query: 217 LAVYWGKVGMHFWTAVSFAYLFTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
            + YWGK+GMHFWT   F +LFT +E +RCAL GMYAD+PF CDAAYIQIP++
Sbjct: 205 RSFYWGKLGMHFWTTAFFVFLFTTIECIRCALVGMYADVPFVCDAAYIQIPHE 253

[Close]

BLAST of Cp4.1LG12g04260 vs. Swiss-Prot
Match: TI204_ARATH (Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana GN=TIC20-IV PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-37
Identity = 98/260 (37.69%), Postives = 140/260 (53.85%), Query Frame = 1


Query: 8   TPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVFPLKLGAG 67
           +P    F N R+  PN  + ++     +  +AS  S R P  E               A 
Sbjct: 23  SPISKKFVNPRVFFPNVDSSAK-----LRLSASSISRRCPR-EIAPLSATASVDFAAAAT 82

Query: 68  SSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWRTLACLPY 127
           SS+ L  +  GL    P L R R      R AKD     + P +  +P+WWWRTLAC+PY
Sbjct: 83  SSNQLFAN--GLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPY 142

Query: 128 LMPFHETWMYSETAYHLHPFLEDFEFL---TYPFLEALGQLPTWFLIAYFFIAYLGIVRR 187
           L+        S+  +++ PFLE  + +    Y    A+ + PTWF + Y ++ Y+ +V+ 
Sbjct: 143 LISLQ----ISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKN 202

Query: 188 KEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTVLEAV 247
           KE PH+ RFH++MGMLLE ALQVI   S + PL  + G+ GM++W A+ F Y+  +LE +
Sbjct: 203 KELPHYLRFHMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECI 262

Query: 248 RCALAGMYADIPFFCDAAYI 265
           RCALAG+YA IPF  DAA I
Sbjct: 263 RCALAGVYAQIPFMTDAASI 270

[Close]

BLAST of Cp4.1LG12g04260 vs. TrEMBL
Match: A0A0A0KFP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108490 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 1.7e-128
Identity = 219/269 (81.41%), Postives = 246/269 (91.45%), Query Frame = 1


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTG FFS+S+LSIP+RS+I R+P CS   A SIRSS EPHL+HQTC Y G+ 
Sbjct: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTA-SIRSSWEPHLKHQTCYYGGLL 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKL A SS FLSGDLGGLLHTIPRLP K+ + M+PRAAKDIPTSYRFPPMTTKPKWWWR
Sbjct: 61  PLKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLA +PYLMPFHETWMYSETAYHLHPFLE+FEFLTYPFL ALG+LP+WFL+AYFFIAYLG
Sbjct: 121 TLASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           IVRRKEWPHFFRFHVVMGML+EIALQVIGTVSRW+PL++YWGK+GMHFWTAVSF ++FTV
Sbjct: 181 IVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           +E  RCALAGMYA++PF C+AAYIQIP+D
Sbjct: 241 VECARCALAGMYAEVPFACEAAYIQIPFD 268

[Close]

BLAST of Cp4.1LG12g04260 vs. TrEMBL
Match: A9PAD4_POPTR (Tic20 family protein OS=Populus trichocarpa GN=POPTR_0002s03320g PE=2 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 3.7e-107
Identity = 192/272 (70.59%), Postives = 218/272 (80.15%), Query Frame = 1


Query: 1   MILNGCTTPTGFFFSNSRL--SIPNRSAISRSPDCSMHAAA-SIRSSREPHLEHQTCRYR 60
           MILNGC  P+G  FS++R   ++P        P  +  AA  S R+S E HLE ++   R
Sbjct: 1   MILNGCAMPSGSAFSSTRTCKTMPGIMVSDHVPYTTARAALLSSRASLERHLESKSWSSR 60

Query: 61  GVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKW 120
           G   L L A S+  LSGD  G  H IP  PR+R     PRA+KD+P S+RFPPMT KP+W
Sbjct: 61  GFLSLHLSAASTPLLSGDYCGFSHYIPTFPRQRRSYSCPRASKDVPYSFRFPPMTKKPRW 120

Query: 121 WWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIA 180
           WWRTLACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+A
Sbjct: 121 WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA 180

Query: 181 YLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYL 240
           YLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK+GMHFWTAV+FAYL
Sbjct: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240

Query: 241 FTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           FTVLE +RCALAGMYAD+PF CDAAYIQIPYD
Sbjct: 241 FTVLECIRCALAGMYADVPFACDAAYIQIPYD 272

[Close]

BLAST of Cp4.1LG12g04260 vs. TrEMBL
Match: A0A0D2TBL2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G213200 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 1.1e-106
Identity = 189/271 (69.74%), Postives = 221/271 (81.55%), Query Frame = 1


Query: 1   MILNGCTTPTGFFFSNSRLS--IPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRG 60
           MIL+G   P G    +SRLS   P  S  +  P  S+  A   RSS +   + ++ + +G
Sbjct: 1   MILHGSCMPFGGVSMSSRLSKPFPCTSVFASIPRFSITDALYTRSSWKQDQDSKSWQVKG 60

Query: 61  VFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWW 120
           + PL L A S+  LSGDLGGL  T+P  PR+R+  + PRA+KD+P S+R+PPMT KPKWW
Sbjct: 61  LPPLHLSAASTPLLSGDLGGLALTVPSFPRRRSSSLVPRASKDVPYSFRYPPMTKKPKWW 120

Query: 121 WRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAY 180
           WR+LACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+AY
Sbjct: 121 WRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAY 180

Query: 181 LGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLF 240
           LG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLA+YWGK+GMHFWTAV+FAYLF
Sbjct: 181 LGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAIYWGKIGMHFWTAVAFAYLF 240

Query: 241 TVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           TVLE +RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 241 TVLECIRCALAGMYADIPFACDAAYIQIPYD 271

[Close]

BLAST of Cp4.1LG12g04260 vs. TrEMBL
Match: A0A0B0P675_GOSAR (Protein TIC 20-I, chloroplastic-like protein OS=Gossypium arboreum GN=F383_07397 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.4e-106
Identity = 189/271 (69.74%), Postives = 220/271 (81.18%), Query Frame = 1


Query: 1   MILNGCTTPTGFFFSNSRLS--IPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRG 60
           MIL+G   P G    +SRLS   P  S  +  P  S   A   RSS +   + ++ + +G
Sbjct: 1   MILHGSCMPFGGVSMSSRLSKPFPCTSVFASIPRFSTTDALYTRSSWKQDQDSKSWQVKG 60

Query: 61  VFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWW 120
           + PL L A S+  LSGDLGGL  T+P  PR+R+  + PRA+KD+P S+R+PPMT KPKWW
Sbjct: 61  LPPLHLSAASTPLLSGDLGGLALTVPLFPRRRSSSLVPRASKDVPYSFRYPPMTKKPKWW 120

Query: 121 WRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAY 180
           WR+LACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+AY
Sbjct: 121 WRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAY 180

Query: 181 LGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLF 240
           LG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLA+YWGK+GMHFWTAV+FAYLF
Sbjct: 181 LGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAIYWGKIGMHFWTAVAFAYLF 240

Query: 241 TVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           TVLE +RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 241 TVLECIRCALAGMYADIPFACDAAYIQIPYD 271

[Close]

BLAST of Cp4.1LG12g04260 vs. TrEMBL
Match: A0A061FS33_THECC (Translocon at the inner envelope membrane of chloroplasts 20 isoform 1 OS=Theobroma cacao GN=TCM_045299 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 3.5e-105
Identity = 191/274 (69.71%), Postives = 222/274 (81.02%), Query Frame = 1


Query: 1   MILNGCTTPTGFFFSNSRLSIPNR-----SAISRSPDCSMHAAASIRSSREPHLEHQTCR 60
           MI +GCT P+G    +SRLS P       ++ISR P  +  A   IRSS     + ++  
Sbjct: 1   MIPHGCTMPSGCASMSSRLSKPMPCSSVFASISRLP--TTDALLRIRSSWMLDQDSKSWM 60

Query: 61  YRGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKP 120
            +G+ PL L A S+  L GDLGGL  T+P LP +R+  + PRA+KD+P S+R+P MT KP
Sbjct: 61  LKGLPPLHLSAASTPLLCGDLGGLSQTVPSLPTRRSSTLVPRASKDVPYSFRYPTMTKKP 120

Query: 121 KWWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFF 180
           KWWWR+LACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF
Sbjct: 121 KWWWRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFF 180

Query: 181 IAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFA 240
           +AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK+GMHFWTAV+FA
Sbjct: 181 VAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFA 240

Query: 241 YLFTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           YLFTVLE +RCALAGMY+DIPF CDAAYIQIPYD
Sbjct: 241 YLFTVLECIRCALAGMYSDIPFVCDAAYIQIPYD 272

[Close]

BLAST of Cp4.1LG12g04260 vs. TAIR10
Match: AT1G04940.1 (AT1G04940.1 translocon at the inner envelope membrane of chloroplasts 20)

HSP 1 Score: 366.7 bits (940), Expect = 1.2e-101
Identity = 170/213 (79.81%), Postives = 190/213 (89.20%), Query Frame = 1


Query: 57  RGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPK 116
           RGV    L A SS  L+G+ G L  T+P LP +R   +TPRA+KD+P+S+RFPPMT KP+
Sbjct: 62  RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQ 121

Query: 117 WWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFI 176
           WWWRTLACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+
Sbjct: 122 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 181

Query: 177 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAY 236
           AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFWTAV+FAY
Sbjct: 182 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAY 241

Query: 237 LFTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LFTVLE++RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 242 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

[Close]

BLAST of Cp4.1LG12g04260 vs. TAIR10
Match: AT1G04945.3 (AT1G04945.3 HIT-type Zinc finger family protein)

HSP 1 Score: 326.2 bits (835), Expect = 1.8e-89
Identity = 151/193 (78.24%), Postives = 171/193 (88.60%), Query Frame = 1


Query: 57  RGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPK 116
           RGV    L A SS  L+G+ G L  T+P LP +R   +TPRA+KD+P+S+RFPPMT KP+
Sbjct: 62  RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQ 121

Query: 117 WWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFI 176
           WWWRTLACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+
Sbjct: 122 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 181

Query: 177 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAY 236
           AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFWTAV+FAY
Sbjct: 182 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAY 241

Query: 237 LFTVLEAVRCALA 250
           LFTVLE++RCALA
Sbjct: 242 LFTVLESIRCALA 254

[Close]

BLAST of Cp4.1LG12g04260 vs. TAIR10
Match: AT4G03320.1 (AT4G03320.1 translocon at the inner envelope membrane of chloroplasts 20-IV)

HSP 1 Score: 158.3 bits (399), Expect = 6.6e-39
Identity = 98/260 (37.69%), Postives = 140/260 (53.85%), Query Frame = 1


Query: 8   TPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVFPLKLGAG 67
           +P    F N R+  PN  + ++     +  +AS  S R P  E               A 
Sbjct: 23  SPISKKFVNPRVFFPNVDSSAK-----LRLSASSISRRCPR-EIAPLSATASVDFAAAAT 82

Query: 68  SSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWRTLACLPY 127
           SS+ L  +  GL    P L R R      R AKD     + P +  +P+WWWRTLAC+PY
Sbjct: 83  SSNQLFAN--GLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPY 142

Query: 128 LMPFHETWMYSETAYHLHPFLEDFEFL---TYPFLEALGQLPTWFLIAYFFIAYLGIVRR 187
           L+        S+  +++ PFLE  + +    Y    A+ + PTWF + Y ++ Y+ +V+ 
Sbjct: 143 LISLQ----ISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKN 202

Query: 188 KEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTVLEAV 247
           KE PH+ RFH++MGMLLE ALQVI   S + PL  + G+ GM++W A+ F Y+  +LE +
Sbjct: 203 KELPHYLRFHMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECI 262

Query: 248 RCALAGMYADIPFFCDAAYI 265
           RCALAG+YA IPF  DAA I
Sbjct: 263 RCALAGVYAQIPFMTDAASI 270

[Close]

BLAST of Cp4.1LG12g04260 vs. NCBI nr
Match: gi|659119592|ref|XP_008459737.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis melo])

HSP 1 Score: 467.6 bits (1202), Expect = 1.4e-128
Identity = 216/269 (80.30%), Postives = 244/269 (90.71%), Query Frame = 1


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTG FFSNS+LSIP+RS+I R+P CS   A SIRSS EPHL+HQTC Y G+ 
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPSRSSILRNPRCSTQTA-SIRSSWEPHLKHQTCYYGGLL 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKL A SS  LSGDLGGLL TIPRLP K+N+ MTPRA+KD+PTSYR+PPMTTKPKWWWR
Sbjct: 61  PLKLNAASSPLLSGDLGGLLSTIPRLPGKKNISMTPRASKDVPTSYRYPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLACLPYLMP HETWMY ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFLIAYFF+AYLG
Sbjct: 121 TLACLPYLMPLHETWMYGETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLIAYFFVAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           +VRRKEWPHF RFHVVMGML+EI+LQVIGT+SRW+P++VYWGK+GMHFWTAV FAY+FTV
Sbjct: 181 VVRRKEWPHFLRFHVVMGMLMEISLQVIGTMSRWLPISVYWGKLGMHFWTAVCFAYMFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LE +RCALAGMYAD+PF C+AAYIQIP+D
Sbjct: 241 LECMRCALAGMYADVPFVCNAAYIQIPFD 268

[Close]

BLAST of Cp4.1LG12g04260 vs. NCBI nr
Match: gi|449445477|ref|XP_004140499.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 466.8 bits (1200), Expect = 2.5e-128
Identity = 219/269 (81.41%), Postives = 246/269 (91.45%), Query Frame = 1


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTG FFS+S+LSIP+RS+I R+P CS   A SIRSS EPHL+HQTC Y G+ 
Sbjct: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTA-SIRSSWEPHLKHQTCYYGGLL 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKL A SS FLSGDLGGLLHTIPRLP K+ + M+PRAAKDIPTSYRFPPMTTKPKWWWR
Sbjct: 61  PLKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLA +PYLMPFHETWMYSETAYHLHPFLE+FEFLTYPFL ALG+LP+WFL+AYFFIAYLG
Sbjct: 121 TLASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           IVRRKEWPHFFRFHVVMGML+EIALQVIGTVSRW+PL++YWGK+GMHFWTAVSF ++FTV
Sbjct: 181 IVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           +E  RCALAGMYA++PF C+AAYIQIP+D
Sbjct: 241 VECARCALAGMYAEVPFACEAAYIQIPFD 268

[Close]

BLAST of Cp4.1LG12g04260 vs. NCBI nr
Match: gi|1009135364|ref|XP_015884949.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 397.9 bits (1021), Expect = 1.4e-107
Identity = 195/272 (71.69%), Postives = 217/272 (79.78%), Query Frame = 1


Query: 1   MILNGCTTPTGFFFSNSRL---SIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYR 60
           MILNGC  PT     NSR+   S+P  S  S  P   + A+    SSR PH E       
Sbjct: 52  MILNGCIMPTVCVSVNSRVDRSSVPRCSVSSCIPRLQVKASFPSVSSRTPHQEAMPV--- 111

Query: 61  GVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKW 120
               L L A S+  LSGD G LLHTIP LPR+    M+PRA+KD+P SYR+PPMT KP+W
Sbjct: 112 ----LHLAAASTPLLSGDRGSLLHTIPMLPRRCGSRMSPRASKDVPYSYRYPPMTKKPRW 171

Query: 121 WWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIA 180
           WWRTLACLPYLMPFHETWMY+ETAYHLHPFLEDFEFLTYPFL A+G LP+WFL+AYFF+A
Sbjct: 172 WWRTLACLPYLMPFHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGTLPSWFLMAYFFVA 231

Query: 181 YLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYL 240
           YLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK+GMHFWTAV+FAYL
Sbjct: 232 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 291

Query: 241 FTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           FTV+E +RCALAGMYAD+PF CDAAYIQIPYD
Sbjct: 292 FTVIECIRCALAGMYADVPFVCDAAYIQIPYD 316

[Close]

BLAST of Cp4.1LG12g04260 vs. NCBI nr
Match: gi|1009168299|ref|XP_015902584.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 397.5 bits (1020), Expect = 1.8e-107
Identity = 195/272 (71.69%), Postives = 217/272 (79.78%), Query Frame = 1


Query: 1   MILNGCTTPTGFFFSNSRL---SIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYR 60
           MILNGC  PT     NSR+   S+P  S  S  P   + A+    SSR PH E       
Sbjct: 1   MILNGCIMPTICVSVNSRVDRSSVPRCSVSSCIPRLQVKASFPSVSSRTPHQEAMPV--- 60

Query: 61  GVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKW 120
               L L A S+  LSGD G LLHTIP LPR+    M+PRA+KD+P SYR+PPMT KP+W
Sbjct: 61  ----LHLAAASTPLLSGDRGSLLHTIPMLPRRCGSRMSPRASKDVPYSYRYPPMTKKPRW 120

Query: 121 WWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIA 180
           WWRTLACLPYLMPFHETWMY+ETAYHLHPFLEDFEFLTYPFL A+G LP+WFL+AYFF+A
Sbjct: 121 WWRTLACLPYLMPFHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGTLPSWFLMAYFFVA 180

Query: 181 YLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYL 240
           YLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK+GMHFWTAV+FAYL
Sbjct: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240

Query: 241 FTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           FTV+E +RCALAGMYAD+PF CDAAYIQIPYD
Sbjct: 241 FTVIECIRCALAGMYADVPFVCDAAYIQIPYD 265

[Close]

BLAST of Cp4.1LG12g04260 vs. NCBI nr
Match: gi|743851070|ref|XP_011028897.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Populus euphratica])

HSP 1 Score: 396.4 bits (1017), Expect = 4.1e-107
Identity = 192/272 (70.59%), Postives = 218/272 (80.15%), Query Frame = 1


Query: 1   MILNGCTTPTGFFFSNSRL--SIPNRSAISRSPDCSMHAAA-SIRSSREPHLEHQTCRYR 60
           MILNGC  P+G  FSN+R   ++         P  +  AA  S R+S E HLE ++   R
Sbjct: 1   MILNGCAMPSGSAFSNTRTCKTMTGIMVSDHVPHTTARAALLSSRASLERHLESKSWSSR 60

Query: 61  GVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKW 120
           G   L L A S+  LSGD  G  H IP  PR+R    +PRA+KD+P S+RFPPMT KP+W
Sbjct: 61  GFLSLHLSAASTPLLSGDYCGFSHYIPTFPRQRRSYSSPRASKDVPYSFRFPPMTKKPRW 120

Query: 121 WWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIA 180
           WWRTLACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+A
Sbjct: 121 WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA 180

Query: 181 YLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYL 240
           YLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK+GMHFWTAV+FAYL
Sbjct: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240

Query: 241 FTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           FTVLE +RCALAGMYAD+PF CDAAYIQIPYD
Sbjct: 241 FTVLECIRCALAGMYADVPFACDAAYIQIPYD 272

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g04260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI201_ARATH	2.2e-100	79.81	Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1	[more]
TIC20_PEA	1.9e-80	62.23	Protein TIC 20, chloroplastic OS=Pisum sativum GN=TIC20 PE=1 SV=1	[more]
TI204_ARATH	1.2e-37	37.69	Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana GN=TIC20-IV PE=2 SV=1	[more]

BLAST of Cp4.1LG12g04260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFP3_CUCSA	1.7e-128	81.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108490 PE=4 SV=1	[more]
A9PAD4_POPTR	3.7e-107	70.59	Tic20 family protein OS=Populus trichocarpa GN=POPTR_0002s03320g PE=2 SV=1	[more]
A0A0D2TBL2_GOSRA	1.1e-106	69.74	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G213200 PE=4 SV=1	[more]
A0A0B0P675_GOSAR	2.4e-106	69.74	Protein TIC 20-I, chloroplastic-like protein OS=Gossypium arboreum GN=F383_07397...	[more]
A0A061FS33_THECC	3.5e-105	69.71	Translocon at the inner envelope membrane of chloroplasts 20 isoform 1 OS=Theobr...	[more]

BLAST of Cp4.1LG12g04260 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04940.1	1.2e-101	79.81	translocon at the inner envelope membrane of chloroplasts 20	[more]
AT1G04945.3	1.8e-89	78.24	HIT-type Zinc finger family protein	[more]
AT4G03320.1	6.6e-39	37.69	translocon at the inner envelope membrane of chloroplasts 20-IV	[more]

BLAST of Cp4.1LG12g04260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119592\|ref\|XP_008459737.1\|	1.4e-128	80.30	PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis melo]	[more]
gi\|449445477\|ref\|XP_004140499.1\|	2.5e-128	81.41	PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis sativus]	[more]
gi\|1009135364\|ref\|XP_015884949.1\|	1.4e-107	71.69	PREDICTED: protein TIC 20-I, chloroplastic-like [Ziziphus jujuba]	[more]
gi\|1009168299\|ref\|XP_015902584.1\|	1.8e-107	71.69	PREDICTED: protein TIC 20-I, chloroplastic-like [Ziziphus jujuba]	[more]
gi\|743851070\|ref\|XP_011028897.1\|	4.1e-107	70.59	PREDICTED: protein TIC 20-I, chloroplastic-like [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005691	Tic20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045037	protein import into chloroplast stroma
biological_process	GO:0006626	protein targeting to mitochondrion
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009706	chloroplast inner membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008565	protein transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g04260.1	Cp4.1LG12g04260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 89..262 score: 1.8
IPR005691	Chloroplast protein import component Tic20	TIGRFAMs	TIGR00994	TIGR00994	coord: 1..269 score: 9.0E
None	No IPR available	PANTHER	PTHR33510	FAMILY NOT NAMED	coord: 1..269 score: 4.0E
None	No IPR available	PANTHER	PTHR33510:SF6	PROTEIN TIC 20-I, CHLOROPLASTIC	coord: 1..269 score: 4.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG12g04260	Cucsa.120750	Cucumber (Gy14) v1	cgycpeB0286
Cp4.1LG12g04260	CmaCh17G004980	Cucurbita maxima (Rimu)	cmacpeB371
Cp4.1LG12g04260	CmoCh17G004710	Cucurbita moschata (Rifu)	cmocpeB335
Cp4.1LG12g04260	Cla006685	Watermelon (97103) v1	cpewmB155
Cp4.1LG12g04260	Csa6G108490	Cucumber (Chinese Long) v2	cpecuB152
Cp4.1LG12g04260	MELO3C022242	Melon (DHL92) v3.5.1	cpemeB112
Cp4.1LG12g04260	ClCG06G002850	Watermelon (Charleston Gray)	cpewcgB144
Cp4.1LG12g04260	CSPI06G08640	Wild cucumber (PI 183967)	cpecpiB154
Cp4.1LG12g04260	Lsi09G016630	Bottle gourd (USVL1VR-Ls)	cpelsiB105
Cp4.1LG12g04260	MELO3C022242.2	Melon (DHL92) v3.6.1	cpemedB138
Cp4.1LG12g04260	CsaV3_6G009010	Cucumber (Chinese Long) v3	cpecucB0176
Cp4.1LG12g04260	Bhi12G001931	Wax gourd	cpewgoB0174
Cp4.1LG12g04260	Carg26671	Silver-seed gourd	carcpeB1250

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG12g04260	Cucumber (Gy14) v2	cgybcpeB732
Cp4.1LG12g04260	Silver-seed gourd	carcpeB0850
Cp4.1LG12g04260	Cucurbita pepo (Zucchini)	cpecpeB159
Cp4.1LG12g04260	Cucurbita maxima (Rimu)	cmacpeB904
Cp4.1LG12g04260	Cucurbita moschata (Rifu)	cmocpeB840
Cp4.1LG12g04260	Bottle gourd (USVL1VR-Ls)	cpelsiB101