Lsi09G016630 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G016630
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Protein TIC 20-I, chloroplastic-like protein
Location	chr09 : 25043799 .. 25047257 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAAGAAAATAGGGAGAAAAATTCTAAAAGGTCGTATTAAAAAAAAAAAAGAAAATCCAAAGAAAACCCTATCCCTCATCCCTCTCTTCTATCTGCTGTTGGCCCTCCGAAAAACGCAGTACAACGTGATTCCGGCACAGCTACCCGCGGGCTTGAAGGTTGTGCGACGAGGCCCACAACCAGCACCGCCCCTTTCCAGCTATCAGAGATTTCAGCAAAGTGATTTCTCACTTGAGGCGAAATTCGGCAGCAACCCACAACCCGAATGGCCCCAAATCGTATTCCCCATAACCTGTAGAATTCAGGTTTGTGAGTTCGAACCTATTCGAATACATTTCAGCAGAGACTAAATTTTTGGATTAGTGGGTAGACTCTTTTCGAATTTACTTCACTGTGTTAAATCTGATTCTAACCATTGGGGCTCTTTTGTGTATAGGTTCGGATTGCGCGATTCAAGTTTAAGGTTGACATTGGGTAAGAGATAGTTGTCTTCACATTCTTGTAGATTCAATTCAATTCAGGTTTTAAACTGAATTTTAACCTTGGAATCTTGTCTAGAATAACTTAGCAGCGCTTTTGAAAGTGTAGTAAGTAGTTCTTGTGAAGTCTGTTTGCTGTTTGTTGTATGCTTTATATGCATTGGTAAGTTTATGACATAAATTGTATGCTACTGAAACTGTTATGTTTCTGGTCTGTATAAATATGCCATGATGTTGGGTTATGCCCTTGTGATGTTGAGATTTTTTTGCAACTATATGATAGTATGATGTTTATGTCCAAAACTTGTTCATGTTGTTTATGAACTGAATTGTGGCCTAGAAAGCATGTATAGAATGTGCACACATGGGACATTGTGAGATTGGTTAGTGAGAAAGGGGTTAGAGGACCTTGAATATGTGATAAAGGAAAGTGGGGAGAGTATCCGGGCGTTGGGTATAAATTGTCGATGGTTGGTTTTGTGTTAAGAAAAGTAAATGAATATCATGGACTCAAGTATAAAGGGTCGAGGATTGGTGTGTCACTATTGAATGTCAAGGCCTTGGGTATAGATGATCGAGAGTCAAACATGCCAATATTGGATACGAGGAGTATCAAGGTCTTGGCCTTGGGTATAAATTGTCAAGAGTCAGTGTGATGTATCTTTGGATAAGTATTGGGTCTTGGGTAGAAATGGTCAAGGGTTGATTGTGGAGGAGTTCTATAGAGAAGTGTTGAGGCTTTGGGTATGAATGGTCAAGAGTCAATGTGTCGCGAAAGAGTATGTCTTGAAGATGTAAAATGATGGAATAAAGTTGGAAAAAGAGCTAGAGAGACATGAGAATTTAGCGATGTCAATGTGTGAGAGCTTGTTAGAGCTTGAGTTAGAGGATGGGTATGATATTATGCATGTTGTAGAAATGATCCTGCATGATATTATTATGATTCATGAGTTGAGTATGCCACGCATATTACTTGTTTTCAGGTTTGCTGTGACTTGTGACAAGCATGAATCCATGATGTTATGATATATGTTGTATGCTATTGAAAGTTTAAGTTGAAAATTGATACAACTTGCCAAGTGAAACTATTTTTTTTTCCTTCCTAAAAGACTAATTATCAAATGCATTATTAATAGACCAATATAATTTATTCATGGGTGAAAGTACTTAAAAGTTTTTGCATACTAATGAGTGAAGTATGACCATTGTCAAGATTGTTCAAGAAAGTAGATCCATTTGTTAGATAAGAGAGTTTCCTAAATGAGAATGATCCTTGAGAATTGGGGATAAAACCTTTCTAACCAGAACAATCCCTAATTCACTATTACAATCATTGTTCAATATCAATGTCGATGTAAATTTATTGAAAAATTATATGAACAAGAAATCATTAAAATATTTAAATTTTAAAAAGTAGCATTATACCCTTTGTTTTTCATGTGACTTTGTTTCTTACACTCTGCAATGTTGCTTAAACAGGTAACTTAGATATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAAATTCCAAGTTATCTATTCCTAGCCATTCTGCCATCTTACGTAGTCCTCATTGCAGTATGCAAACTGCTAGCATTAGGAGTTCATGGGAACCTCGTTTAGAGCATCAGACATGTTACTATAGAGGTGCATACGAAACCTTCCATAATCTTTATTTATCTTTTATTTAATCTTTATATTGAACCAATTATTACTGCAGTTTTGGAGATATCTCATCTCCCTCTTTTTGTATGATCTCTTTTTTTTAAAAAAAATAATAATTAAAATAAATAAATAGATAAATAATTAAAAAAATTTATTACTGCGGTGGTAACATTAATATTAAGAAATTATTGTCTGACTTTTGTGATGCTGACTCTTGAAGAATTATACCATCCTTTTCAGTAATTGATTCACTGAATGGTGTGCTTCATTTTGTAATCCATTACTTTTCAAATGTAGGTCTCTTACCCTTAAAACTACGTGCTGCATCTTCCCCCCTCTTAAGTGGGGATCTAGGTGGCTTGCTACATACAATTCCCAGGTTACCAAGGCAAAAAAAGATTGGCATGACACCACGGGCAGCCAAAGATGTCCCTACGAGTTTTCGTTTCCCTCCAATGACCACGAAACCAAAATGGTGGTGGAGGACATTAGCATGCCTACCCTATCTAATGCCCCTTCACGAAACTTGGATGTACGCCGAAACAGCATACCACCTACACCCATTCCTGGAGGACTTTGAATTCTTCACATATCCCTTTCTCGGAGCCATTGGGAGACTACCAAGTTGGTTCTTGATGGCATATTTCTTTGTTGCCTATCTAGGAGTTGTAAGACGGAAGGAATGGCCTCACTTCTTTAGATTTCACGTTGTTATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGCCGTTGGATGCCCCTTGCAGTTTATTGGGGTAAATTAGGGATGCACTTTTGGACAGCTGTAGCATTCGCTTACCTGTTCACGGTCTTGGAATCCATACGCTGTGCTCTTGCAGGCATGTATGCTGATATCCCCTTTGTCTGTGATGCAGCCTACATCCAAATACCATATGATTAAGAACTCTTCGGTCTATAGTCGCGATGTGAGTAGAATGCCATGTAGACATGTAATTTTGCTTCTGCCCTTGTAAAGTGCAGTTGCAGATGAATATCGAACATTCTGAACTCTATTGACATTTTCTTTAGTTAGTCTTTGGGAAAACATGTATCTTTGTCTTTGTAGAAACTGAGGATTTTGTATGGAAGAGCTTGTGGGCGAAGTAAAGAAGGAAACTCATCCTCACTGCCTTTTGAATGTAAGTGTCTGTTCACTTTAACGTCAAACTTCTCTGCTGCCTTTGTGGGCTTTGATAAGAAAAGAATTTCCTTTACTCCAAACCATTTTAAATTTGAAAATACATTCAACTTTAGCAGCCCTAAAAA

mRNA sequence

AAAGAAAGAAAATAGGGAGAAAAATTCTAAAAGGTCGTATTAAAAAAAAAAAAGAAAATCCAAAGAAAACCCTATCCCTCATCCCTCTCTTCTATCTGCTGTTGGCCCTCCGAAAAACGCAGTACAACGTGATTCCGGCACAGCTACCCGCGGGCTTGAAGGTTGTGCGACGAGGCCCACAACCAGCACCGCCCCTTTCCAGCTATCAGAGATTTCAGCAAAGTGATTTCTCACTTGAGGCGAAATTCGGCAGCAACCCACAACCCGAATGGCCCCAAATCGTATTCCCCATAACCTGTAGAATTCAGGTTCGGATTGCGCGATTCAAGTTTAAGGTTGACATTGGGTAAGAGATAGTTGTCTTCACATTCTTGTAGATTCAATTCAATTCAGGTAACTTAGATATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAAATTCCAAGTTATCTATTCCTAGCCATTCTGCCATCTTACGTAGTCCTCATTGCAGTATGCAAACTGCTAGCATTAGGAGTTCATGGGAACCTCGTTTAGAGCATCAGACATGTTACTATAGAGGTCTCTTACCCTTAAAACTACGTGCTGCATCTTCCCCCCTCTTAAGTGGGGATCTAGGTGGCTTGCTACATACAATTCCCAGGTTACCAAGGCAAAAAAAGATTGGCATGACACCACGGGCAGCCAAAGATGTCCCTACGAGTTTTCGTTTCCCTCCAATGACCACGAAACCAAAATGGTGGTGGAGGACATTAGCATGCCTACCCTATCTAATGCCCCTTCACGAAACTTGGATGTACGCCGAAACAGCATACCACCTACACCCATTCCTGGAGGACTTTGAATTCTTCACATATCCCTTTCTCGGAGCCATTGGGAGACTACCAAGTTGGTTCTTGATGGCATATTTCTTTGTTGCCTATCTAGGAGTTGTAAGACGGAAGGAATGGCCTCACTTCTTTAGATTTCACGTTGTTATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGCCGTTGGATGCCCCTTGCAGTTTATTGGGGTAAATTAGGGATGCACTTTTGGACAGCTGTAGCATTCGCTTACCTGTTCACGGTCTTGGAATCCATACGCTGTGCTCTTGCAGGCATGTATGCTGATATCCCCTTTGTCTGTGATGCAGCCTACATCCAAATACCATATGATTAAGAACTCTTCGGTCTATAGTCGCGATGTGAGTAGAATGCCATGTAGACATGTAATTTTGCTTCTGCCCTTGTAAAGTGCAGTTGCAGATGAATATCGAACATTCTGAACTCTATTGACATTTTCTTTAGTTAGTCTTTGGGAAAACATGTATCTTTGTCTTTGTAGAAACTGAGGATTTTGTATGGAAGAGCTTGTGGGCGAAGTAAAGAAGGAAACTCATCCTCACTGCCTTTTGAATGTAAGTGTCTGTTCACTTTAACGTCAAACTTCTCTGCTGCCTTTGTGGGCTTTGATAAGAAAAGAATTTCCTTTACTCCAAACCATTTTAAATTTGAAAATACATTCAACTTTAGCAGCCCTAAAAA

Coding sequence (CDS)

ATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAAATTCCAAGTTATCTATTCCTAGCCATTCTGCCATCTTACGTAGTCCTCATTGCAGTATGCAAACTGCTAGCATTAGGAGTTCATGGGAACCTCGTTTAGAGCATCAGACATGTTACTATAGAGGTCTCTTACCCTTAAAACTACGTGCTGCATCTTCCCCCCTCTTAAGTGGGGATCTAGGTGGCTTGCTACATACAATTCCCAGGTTACCAAGGCAAAAAAAGATTGGCATGACACCACGGGCAGCCAAAGATGTCCCTACGAGTTTTCGTTTCCCTCCAATGACCACGAAACCAAAATGGTGGTGGAGGACATTAGCATGCCTACCCTATCTAATGCCCCTTCACGAAACTTGGATGTACGCCGAAACAGCATACCACCTACACCCATTCCTGGAGGACTTTGAATTCTTCACATATCCCTTTCTCGGAGCCATTGGGAGACTACCAAGTTGGTTCTTGATGGCATATTTCTTTGTTGCCTATCTAGGAGTTGTAAGACGGAAGGAATGGCCTCACTTCTTTAGATTTCACGTTGTTATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGCCGTTGGATGCCCCTTGCAGTTTATTGGGGTAAATTAGGGATGCACTTTTGGACAGCTGTAGCATTCGCTTACCTGTTCACGGTCTTGGAATCCATACGCTGTGCTCTTGCAGGCATGTATGCTGATATCCCCTTTGTCTGTGATGCAGCCTACATCCAAATACCATATGATTAA

Protein sequence

MILNGCTTPTGCFFSNSKLSIPSHSAILRSPHCSMQTASIRSSWEPRLEHQTCYYRGLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPKWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVLESIRCALAGMYADIPFVCDAAYIQIPYD

Homology

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BLAST of Lsi09G016630 vs. Swiss-Prot
Match: TI201_ARATH (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 5.0e-105
Identity = 182/213 (85.45%), Postives = 195/213 (91.55%), Query Frame = 1


Query: 56  RGLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPK 115
           RG+    L A+SS LL+G+ G L  T+P LP ++K  +TPRA+KDVP+SFRFPPMT KP+
Sbjct: 62  RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQ 121

Query: 116 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFV 175
           WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEF TYPFLGAIGRLPSWFLMAYFFV
Sbjct: 122 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 181

Query: 176 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 235
           AYLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFWTAVAFAY
Sbjct: 182 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAY 241

Query: 236 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD
Sbjct: 242 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

[Close]

BLAST of Lsi09G016630 vs. Swiss-Prot
Match: TIC20_PEA (Protein TIC 20, chloroplastic OS=Pisum sativum GN=TIC20 PE=1 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 5.4e-83
Identity = 158/268 (58.96%), Postives = 185/268 (69.03%), Query Frame = 1


Query: 1   MILNGCTTPTGCFFSNSKLSIPSHSAILRSPHCSMQTASIRSSWEPRLEHQTCYYRGLLP 60
           MI NG T   G     +   IP+  A+          +SIRS W   LE++    RG+  
Sbjct: 1   MIQNGGTVSQGSVLCYA-CQIPAKVAV----------SSIRSFWGHSLENKP---RGMTF 60

Query: 61  LKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
             + A SS LLSG    L  TIP LP   K   TPRA KD  + FRFPPMT KP+WWWRT
Sbjct: 61  TDMSATSSLLLSGGQNFLSRTIPVLPTLHKSSTTPRATKD-SSGFRFPPMTKKPRWWWRT 120

Query: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFVAYLGV 180
           L+C+PYL+P H+ WMYA TAYHLHPF+  F+  TYPFL AIG LP W L+AYF +AYL +
Sbjct: 121 LSCIPYLLPFHQAWMYARTAYHLHPFIPYFQPMTYPFLMAIGTLPRWSLIAYFLIAYLTI 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVL 240
           VRRKEWPHFFRFHV +GML+EIALQV G VSRWMP + YWGKLGMHFWT   F +LFT +
Sbjct: 181 VRRKEWPHFFRFHVAVGMLIEIALQVTGIVSRWMPRSFYWGKLGMHFWTTAFFVFLFTTI 240

Query: 241 ESIRCALAGMYADIPFVCDAAYIQIPYD 269
           E IRCAL GMYAD+PFVCDAAYIQIP++
Sbjct: 241 ECIRCALVGMYADVPFVCDAAYIQIPHE 253

[Close]

BLAST of Lsi09G016630 vs. Swiss-Prot
Match: TI204_ARATH (Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana GN=TIC20-IV PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.8e-39
Identity = 86/190 (45.26%), Postives = 118/190 (62.11%), Query Frame = 1


Query: 77  GLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPKWWWRTLACLPYLMPLHETWMY 136
           GL    P L R ++     R AKD     + P +  +P+WWWRTLAC+PYL+ L      
Sbjct: 85  GLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPYLISLQ----I 144

Query: 137 AETAYHLHPFLEDFEFF---TYPFLGAIGRLPSWFLMAYFFVAYLGVVRRKEWPHFFRFH 196
           ++  +++ PFLE  +      Y   GAI R P+WF M Y ++ Y+ VV+ KE PH+ RFH
Sbjct: 145 SDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKNKELPHYLRFH 204

Query: 197 VVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVLESIRCALAGMYAD 256
           ++MGMLLE ALQVI   S + PL  + G+ GM++W A+ F Y+  +LE IRCALAG+YA 
Sbjct: 205 MMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECIRCALAGVYAQ 264

Query: 257 IPFVCDAAYI 264
           IPF+ DAA I
Sbjct: 265 IPFMTDAASI 270

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BLAST of Lsi09G016630 vs. TrEMBL
Match: A0A0A0KFP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108490 PE=4 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 1.0e-136
Identity = 225/268 (83.96%), Postives = 252/268 (94.03%), Query Frame = 1


Query: 1   MILNGCTTPTGCFFSNSKLSIPSHSAILRSPHCSMQTASIRSSWEPRLEHQTCYYRGLLP 60
           MILNGCTTPTGCFFS+SKLSIPS S+ILR+P CS QTASIRSSWEP L+HQTCYY GLLP
Sbjct: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           LKLRAASSP LSGDLGGLLHTIPRLP +K I M+PRAAKD+PTS+RFPPMTTKPKWWWRT
Sbjct: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFVAYLGV 180
           LA +PYLMP HETWMY+ETAYHLHPFLE+FEF TYPFLGA+GRLPSWFLMAYFF+AYLG+
Sbjct: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVL 240
           VRRKEWPHFFRFHVVMGML+EIALQVIGTVSRW+PL++YWGK+GMHFWTAV+F ++FTV+
Sbjct: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240

Query: 241 ESIRCALAGMYADIPFVCDAAYIQIPYD 269
           E  RCALAGMYA++PF C+AAYIQIP+D
Sbjct: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268

[Close]

BLAST of Lsi09G016630 vs. TrEMBL
Match: A9PAD4_POPTR (Tic20 family protein OS=Populus trichocarpa GN=POPTR_0002s03320g PE=2 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 2.7e-113
Identity = 208/273 (76.19%), Postives = 224/273 (82.05%), Query Frame = 1


Query: 1   MILNGCTTPTGCFFSNSKLSIPSHSAILRSPHCSMQTA-----SIRSSWEPRLEHQTCYY 60
           MILNGC  P+G  FS+++ +  +   I+ S H    TA     S R+S E  LE ++   
Sbjct: 1   MILNGCAMPSGSAFSSTR-TCKTMPGIMVSDHVPYTTARAALLSSRASLERHLESKSWSS 60

Query: 61  RGLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPK 120
           RG L L L AAS+PLLSGD  G  H IP  PRQ++    PRA+KDVP SFRFPPMT KP+
Sbjct: 61  RGFLSLHLSAASTPLLSGDYCGFSHYIPTFPRQRRSYSCPRASKDVPYSFRFPPMTKKPR 120

Query: 121 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFV 180
           WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEF TYPFLGAIGRLPSWFLMAYFFV
Sbjct: 121 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 180

Query: 181 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 240
           AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY
Sbjct: 181 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 240

Query: 241 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           LFTVLE IRCALAGMYAD+PF CDAAYIQIPYD
Sbjct: 241 LFTVLECIRCALAGMYADVPFACDAAYIQIPYD 272

[Close]

BLAST of Lsi09G016630 vs. TrEMBL
Match: A0A061FS33_THECC (Translocon at the inner envelope membrane of chloroplasts 20 isoform 1 OS=Theobroma cacao GN=TCM_045299 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 7.7e-113
Identity = 203/272 (74.63%), Postives = 225/272 (82.72%), Query Frame = 1


Query: 1   MILNGCTTPTGCFFSNSKLSIPSHSAILRSPHCSMQTAS----IRSSWEPRLEHQTCYYR 60
           MI +GCT P+GC   +S+LS P   + + +    + T      IRSSW    + ++   +
Sbjct: 1   MIPHGCTMPSGCASMSSRLSKPMPCSSVFASISRLPTTDALLRIRSSWMLDQDSKSWMLK 60

Query: 61  GLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPKW 120
           GL PL L AAS+PLL GDLGGL  T+P LP ++   + PRA+KDVP SFR+P MT KPKW
Sbjct: 61  GLPPLHLSAASTPLLCGDLGGLSQTVPSLPTRRSSTLVPRASKDVPYSFRYPTMTKKPKW 120

Query: 121 WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFVA 180
           WWR+LACLPYLMPLHETWMYAETAYHLHPFLEDFEF TYPFLGAIGRLPSWFLMAYFFVA
Sbjct: 121 WWRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA 180

Query: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240
           YLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL
Sbjct: 181 YLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240

Query: 241 FTVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           FTVLE IRCALAGMY+DIPFVCDAAYIQIPYD
Sbjct: 241 FTVLECIRCALAGMYSDIPFVCDAAYIQIPYD 272

[Close]

BLAST of Lsi09G016630 vs. TrEMBL
Match: A0A0D2TBL2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G213200 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 2.9e-112
Identity = 204/271 (75.28%), Postives = 223/271 (82.29%), Query Frame = 1


Query: 1   MILNGCTTPTGCFFSNSKLS--IPSHSAILRSPHCSMQTASI-RSSWEPRLEHQTCYYRG 60
           MIL+G   P G    +S+LS   P  S     P  S+  A   RSSW+   + ++   +G
Sbjct: 1   MILHGSCMPFGGVSMSSRLSKPFPCTSVFASIPRFSITDALYTRSSWKQDQDSKSWQVKG 60

Query: 61  LLPLKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPKWW 120
           L PL L AAS+PLLSGDLGGL  T+P  PR++   + PRA+KDVP SFR+PPMT KPKWW
Sbjct: 61  LPPLHLSAASTPLLSGDLGGLALTVPSFPRRRSSSLVPRASKDVPYSFRYPPMTKKPKWW 120

Query: 121 WRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFVAY 180
           WR+LACLPYLMPLHETWMYAETAYHLHPFLEDFEF TYPFLGAIGRLPSWFLMAYFFVAY
Sbjct: 121 WRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAY 180

Query: 181 LGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLF 240
           LGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLA+YWGK+GMHFWTAVAFAYLF
Sbjct: 181 LGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAIYWGKIGMHFWTAVAFAYLF 240

Query: 241 TVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           TVLE IRCALAGMYADIPF CDAAYIQIPYD
Sbjct: 241 TVLECIRCALAGMYADIPFACDAAYIQIPYD 271

[Close]

BLAST of Lsi09G016630 vs. TrEMBL
Match: A0A0B0P675_GOSAR (Protein TIC 20-I, chloroplastic-like protein OS=Gossypium arboreum GN=F383_07397 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 6.5e-112
Identity = 204/271 (75.28%), Postives = 222/271 (81.92%), Query Frame = 1


Query: 1   MILNGCTTPTGCFFSNSKLS--IPSHSAILRSPHCSMQTASI-RSSWEPRLEHQTCYYRG 60
           MIL+G   P G    +S+LS   P  S     P  S   A   RSSW+   + ++   +G
Sbjct: 1   MILHGSCMPFGGVSMSSRLSKPFPCTSVFASIPRFSTTDALYTRSSWKQDQDSKSWQVKG 60

Query: 61  LLPLKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPKWW 120
           L PL L AAS+PLLSGDLGGL  T+P  PR++   + PRA+KDVP SFR+PPMT KPKWW
Sbjct: 61  LPPLHLSAASTPLLSGDLGGLALTVPLFPRRRSSSLVPRASKDVPYSFRYPPMTKKPKWW 120

Query: 121 WRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFVAY 180
           WR+LACLPYLMPLHETWMYAETAYHLHPFLEDFEF TYPFLGAIGRLPSWFLMAYFFVAY
Sbjct: 121 WRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAY 180

Query: 181 LGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLF 240
           LGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLA+YWGK+GMHFWTAVAFAYLF
Sbjct: 181 LGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAIYWGKIGMHFWTAVAFAYLF 240

Query: 241 TVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           TVLE IRCALAGMYADIPF CDAAYIQIPYD
Sbjct: 241 TVLECIRCALAGMYADIPFACDAAYIQIPYD 271

[Close]

BLAST of Lsi09G016630 vs. TAIR10
Match: AT1G04940.1 (AT1G04940.1 translocon at the inner envelope membrane of chloroplasts 20)

HSP 1 Score: 382.1 bits (980), Expect = 2.8e-106
Identity = 182/213 (85.45%), Postives = 195/213 (91.55%), Query Frame = 1


Query: 56  RGLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPK 115
           RG+    L A+SS LL+G+ G L  T+P LP ++K  +TPRA+KDVP+SFRFPPMT KP+
Sbjct: 62  RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQ 121

Query: 116 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFV 175
           WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEF TYPFLGAIGRLPSWFLMAYFFV
Sbjct: 122 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 181

Query: 176 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 235
           AYLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFWTAVAFAY
Sbjct: 182 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAY 241

Query: 236 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD
Sbjct: 242 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

[Close]

BLAST of Lsi09G016630 vs. TAIR10
Match: AT1G04945.3 (AT1G04945.3 HIT-type Zinc finger family protein)

HSP 1 Score: 339.3 bits (869), Expect = 2.1e-93
Identity = 162/193 (83.94%), Postives = 175/193 (90.67%), Query Frame = 1


Query: 56  RGLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPK 115
           RG+    L A+SS LL+G+ G L  T+P LP ++K  +TPRA+KDVP+SFRFPPMT KP+
Sbjct: 62  RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQ 121

Query: 116 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFV 175
           WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEF TYPFLGAIGRLPSWFLMAYFFV
Sbjct: 122 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 181

Query: 176 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 235
           AYLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFWTAVAFAY
Sbjct: 182 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAY 241

Query: 236 LFTVLESIRCALA 249
           LFTVLESIRCALA
Sbjct: 242 LFTVLESIRCALA 254

[Close]

BLAST of Lsi09G016630 vs. TAIR10
Match: AT4G03320.1 (AT4G03320.1 translocon at the inner envelope membrane of chloroplasts 20-IV)

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-40
Identity = 86/190 (45.26%), Postives = 118/190 (62.11%), Query Frame = 1


Query: 77  GLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPKWWWRTLACLPYLMPLHETWMY 136
           GL    P L R ++     R AKD     + P +  +P+WWWRTLAC+PYL+ L      
Sbjct: 85  GLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPYLISLQ----I 144

Query: 137 AETAYHLHPFLEDFEFF---TYPFLGAIGRLPSWFLMAYFFVAYLGVVRRKEWPHFFRFH 196
           ++  +++ PFLE  +      Y   GAI R P+WF M Y ++ Y+ VV+ KE PH+ RFH
Sbjct: 145 SDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKNKELPHYLRFH 204

Query: 197 VVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVLESIRCALAGMYAD 256
           ++MGMLLE ALQVI   S + PL  + G+ GM++W A+ F Y+  +LE IRCALAG+YA 
Sbjct: 205 MMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECIRCALAGVYAQ 264

Query: 257 IPFVCDAAYI 264
           IPF+ DAA I
Sbjct: 265 IPFMTDAASI 270

[Close]

BLAST of Lsi09G016630 vs. NCBI nr
Match: gi|659119592|ref|XP_008459737.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis melo])

HSP 1 Score: 504.2 bits (1297), Expect = 1.4e-139
Identity = 234/268 (87.31%), Postives = 253/268 (94.40%), Query Frame = 1


Query: 1   MILNGCTTPTGCFFSNSKLSIPSHSAILRSPHCSMQTASIRSSWEPRLEHQTCYYRGLLP 60
           MILNGCTTPTGCFFSNSKLSIPS S+ILR+P CS QTASIRSSWEP L+HQTCYY GLLP
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           LKL AASSPLLSGDLGGLL TIPRLP +K I MTPRA+KDVPTS+R+PPMTTKPKWWWRT
Sbjct: 61  LKLNAASSPLLSGDLGGLLSTIPRLPGKKNISMTPRASKDVPTSYRYPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFVAYLGV 180
           LACLPYLMPLHETWMY ETAYHLHPFLEDFEF TYPFLGAIGRLPSWFL+AYFFVAYLGV
Sbjct: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLIAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVL 240
           VRRKEWPHF RFHVVMGML+EI+LQVIGT+SRW+P++VYWGKLGMHFWTAV FAY+FTVL
Sbjct: 181 VRRKEWPHFLRFHVVMGMLMEISLQVIGTMSRWLPISVYWGKLGMHFWTAVCFAYMFTVL 240

Query: 241 ESIRCALAGMYADIPFVCDAAYIQIPYD 269
           E +RCALAGMYAD+PFVC+AAYIQIP+D
Sbjct: 241 ECMRCALAGMYADVPFVCNAAYIQIPFD 268

[Close]

BLAST of Lsi09G016630 vs. NCBI nr
Match: gi|449445477|ref|XP_004140499.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 494.2 bits (1271), Expect = 1.4e-136
Identity = 225/268 (83.96%), Postives = 252/268 (94.03%), Query Frame = 1


Query: 1   MILNGCTTPTGCFFSNSKLSIPSHSAILRSPHCSMQTASIRSSWEPRLEHQTCYYRGLLP 60
           MILNGCTTPTGCFFS+SKLSIPS S+ILR+P CS QTASIRSSWEP L+HQTCYY GLLP
Sbjct: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           LKLRAASSP LSGDLGGLLHTIPRLP +K I M+PRAAKD+PTS+RFPPMTTKPKWWWRT
Sbjct: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFVAYLGV 180
           LA +PYLMP HETWMY+ETAYHLHPFLE+FEF TYPFLGA+GRLPSWFLMAYFF+AYLG+
Sbjct: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVL 240
           VRRKEWPHFFRFHVVMGML+EIALQVIGTVSRW+PL++YWGK+GMHFWTAV+F ++FTV+
Sbjct: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240

Query: 241 ESIRCALAGMYADIPFVCDAAYIQIPYD 269
           E  RCALAGMYA++PF C+AAYIQIP+D
Sbjct: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268

[Close]

BLAST of Lsi09G016630 vs. NCBI nr
Match: gi|743851070|ref|XP_011028897.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Populus euphratica])

HSP 1 Score: 419.5 bits (1077), Expect = 4.5e-114
Identity = 209/273 (76.56%), Postives = 226/273 (82.78%), Query Frame = 1


Query: 1   MILNGCTTPTGCFFSNSKLSIPSHSAILRSPHCSMQTA-----SIRSSWEPRLEHQTCYY 60
           MILNGC  P+G  FSN++ +  + + I+ S H    TA     S R+S E  LE ++   
Sbjct: 1   MILNGCAMPSGSAFSNTR-TCKTMTGIMVSDHVPHTTARAALLSSRASLERHLESKSWSS 60

Query: 61  RGLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPK 120
           RG L L L AAS+PLLSGD  G  H IP  PRQ++   +PRA+KDVP SFRFPPMT KP+
Sbjct: 61  RGFLSLHLSAASTPLLSGDYCGFSHYIPTFPRQRRSYSSPRASKDVPYSFRFPPMTKKPR 120

Query: 121 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFV 180
           WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEF TYPFLGAIGRLPSWFLMAYFFV
Sbjct: 121 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 180

Query: 181 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 240
           AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY
Sbjct: 181 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 240

Query: 241 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           LFTVLE IRCALAGMYAD+PF CDAAYIQIPYD
Sbjct: 241 LFTVLECIRCALAGMYADVPFACDAAYIQIPYD 272

[Close]

BLAST of Lsi09G016630 vs. NCBI nr
Match: gi|224062091|ref|XP_002300750.1| (Tic20 family protein [Populus trichocarpa])

HSP 1 Score: 416.4 bits (1069), Expect = 3.8e-113
Identity = 208/273 (76.19%), Postives = 224/273 (82.05%), Query Frame = 1


Query: 1   MILNGCTTPTGCFFSNSKLSIPSHSAILRSPHCSMQTA-----SIRSSWEPRLEHQTCYY 60
           MILNGC  P+G  FS+++ +  +   I+ S H    TA     S R+S E  LE ++   
Sbjct: 1   MILNGCAMPSGSAFSSTR-TCKTMPGIMVSDHVPYTTARAALLSSRASLERHLESKSWSS 60

Query: 61  RGLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPK 120
           RG L L L AAS+PLLSGD  G  H IP  PRQ++    PRA+KDVP SFRFPPMT KP+
Sbjct: 61  RGFLSLHLSAASTPLLSGDYCGFSHYIPTFPRQRRSYSCPRASKDVPYSFRFPPMTKKPR 120

Query: 121 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFV 180
           WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEF TYPFLGAIGRLPSWFLMAYFFV
Sbjct: 121 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 180

Query: 181 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 240
           AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY
Sbjct: 181 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAY 240

Query: 241 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           LFTVLE IRCALAGMYAD+PF CDAAYIQIPYD
Sbjct: 241 LFTVLECIRCALAGMYADVPFACDAAYIQIPYD 272

[Close]

BLAST of Lsi09G016630 vs. NCBI nr
Match: gi|590569506|ref|XP_007011089.1| (Translocon at the inner envelope membrane of chloroplasts 20 isoform 1 [Theobroma cacao])

HSP 1 Score: 414.8 bits (1065), Expect = 1.1e-112
Identity = 203/272 (74.63%), Postives = 225/272 (82.72%), Query Frame = 1


Query: 1   MILNGCTTPTGCFFSNSKLSIPSHSAILRSPHCSMQTAS----IRSSWEPRLEHQTCYYR 60
           MI +GCT P+GC   +S+LS P   + + +    + T      IRSSW    + ++   +
Sbjct: 1   MIPHGCTMPSGCASMSSRLSKPMPCSSVFASISRLPTTDALLRIRSSWMLDQDSKSWMLK 60

Query: 61  GLLPLKLRAASSPLLSGDLGGLLHTIPRLPRQKKIGMTPRAAKDVPTSFRFPPMTTKPKW 120
           GL PL L AAS+PLL GDLGGL  T+P LP ++   + PRA+KDVP SFR+P MT KPKW
Sbjct: 61  GLPPLHLSAASTPLLCGDLGGLSQTVPSLPTRRSSTLVPRASKDVPYSFRYPTMTKKPKW 120

Query: 121 WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFFTYPFLGAIGRLPSWFLMAYFFVA 180
           WWR+LACLPYLMPLHETWMYAETAYHLHPFLEDFEF TYPFLGAIGRLPSWFLMAYFFVA
Sbjct: 121 WWRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA 180

Query: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240
           YLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL
Sbjct: 181 YLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240

Query: 241 FTVLESIRCALAGMYADIPFVCDAAYIQIPYD 269
           FTVLE IRCALAGMY+DIPFVCDAAYIQIPYD
Sbjct: 241 FTVLECIRCALAGMYSDIPFVCDAAYIQIPYD 272

The following BLAST results are available for this feature:

BLAST of Lsi09G016630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI201_ARATH	5.0e-105	85.45	Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1	[more]
TIC20_PEA	5.4e-83	58.96	Protein TIC 20, chloroplastic OS=Pisum sativum GN=TIC20 PE=1 SV=1	[more]
TI204_ARATH	2.8e-39	45.26	Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana GN=TIC20-IV PE=2 SV=1	[more]

BLAST of Lsi09G016630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFP3_CUCSA	1.0e-136	83.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108490 PE=4 SV=1	[more]
A9PAD4_POPTR	2.7e-113	76.19	Tic20 family protein OS=Populus trichocarpa GN=POPTR_0002s03320g PE=2 SV=1	[more]
A0A061FS33_THECC	7.7e-113	74.63	Translocon at the inner envelope membrane of chloroplasts 20 isoform 1 OS=Theobr...	[more]
A0A0D2TBL2_GOSRA	2.9e-112	75.28	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G213200 PE=4 SV=1	[more]
A0A0B0P675_GOSAR	6.5e-112	75.28	Protein TIC 20-I, chloroplastic-like protein OS=Gossypium arboreum GN=F383_07397...	[more]

BLAST of Lsi09G016630 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04940.1	2.8e-106	85.45	translocon at the inner envelope membrane of chloroplasts 20	[more]
AT1G04945.3	2.1e-93	83.94	HIT-type Zinc finger family protein	[more]
AT4G03320.1	1.6e-40	45.26	translocon at the inner envelope membrane of chloroplasts 20-IV	[more]

BLAST of Lsi09G016630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119592\|ref\|XP_008459737.1\|	1.4e-139	87.31	PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis melo]	[more]
gi\|449445477\|ref\|XP_004140499.1\|	1.4e-136	83.96	PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis sativus]	[more]
gi\|743851070\|ref\|XP_011028897.1\|	4.5e-114	76.56	PREDICTED: protein TIC 20-I, chloroplastic-like [Populus euphratica]	[more]
gi\|224062091\|ref\|XP_002300750.1\|	3.8e-113	76.19	Tic20 family protein [Populus trichocarpa]	[more]
gi\|590569506\|ref\|XP_007011089.1\|	1.1e-112	74.63	Translocon at the inner envelope membrane of chloroplasts 20 isoform 1 [Theobrom...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005691	Tic20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045037	protein import into chloroplast stroma
biological_process	GO:0006626	protein targeting to mitochondrion
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009706	chloroplast inner membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008565	protein transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G016630.1	Lsi09G016630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 87..261 score: 2.6
IPR005691	Chloroplast protein import component Tic20	TIGRFAMs	TIGR00994	TIGR00994	coord: 1..268 score: 3.5E
None	No IPR available	PANTHER	PTHR33510	FAMILY NOT NAMED	coord: 1..268 score: 1.6E
None	No IPR available	PANTHER	PTHR33510:SF6	PROTEIN TIC 20-I, CHLOROPLASTIC	coord: 1..268 score: 1.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G016630	Csa6G108490	Cucumber (Chinese Long) v2	culsiB398
Lsi09G016630	CSPI06G08640	Wild cucumber (PI 183967)	cpilsiB401
Lsi09G016630	Cucsa.120750	Cucumber (Gy14) v1	cgylsiB171
Lsi09G016630	CmaCh17G004980	Cucurbita maxima (Rimu)	cmalsiB336
Lsi09G016630	CmoCh17G004710	Cucurbita moschata (Rifu)	cmolsiB326
Lsi09G016630	Cla006685	Watermelon (97103) v1	lsiwmB042
Lsi09G016630	MELO3C022242	Melon (DHL92) v3.5.1	lsimeB018
Lsi09G016630	ClCG06G002850	Watermelon (Charleston Gray)	lsiwcgB026
Lsi09G016630	MELO3C022242.2	Melon (DHL92) v3.6.1	lsimedB020
Lsi09G016630	Cla97C06G112220	Watermelon (97103) v2	lsiwmbB024
Lsi09G016630	Bhi12G001931	Wax gourd	lsiwgoB034
Lsi09G016630	Cp4.1LG12g04260	Cucurbita pepo (Zucchini)	cpelsiB105
Lsi09G016630	Carg26671	Silver-seed gourd	carlsiB821
Lsi09G016630	CsaV3_6G009010	Cucumber (Chinese Long) v3	cuclsiB422

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G016630	Cucumber (Gy14) v1	cgylsiB169
Lsi09G016630	Cucurbita maxima (Rimu)	cmalsiB331
Lsi09G016630	Cucurbita moschata (Rifu)	cmolsiB320
Lsi09G016630	Cucurbita pepo (Zucchini)	cpelsiB101
Lsi09G016630	Wild cucumber (PI 183967)	cpilsiB404
Lsi09G016630	Cucumber (Chinese Long) v2	culsiB402
Lsi09G016630	Melon (DHL92) v3.5.1	lsimeB017
Lsi09G016630	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G016630	Watermelon (97103) v1	lsiwmB036
Lsi09G016630	Cucumber (Gy14) v2	cgyblsiB364
Lsi09G016630	Cucumber (Gy14) v2	cgyblsiB366
Lsi09G016630	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G016630	Silver-seed gourd	carlsiB820
Lsi09G016630	Cucumber (Chinese Long) v3	cuclsiB424
Lsi09G016630	Watermelon (97103) v2	lsiwmbB026
Lsi09G016630	Wax gourd	lsiwgoB011