CSPI06G08640 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G08640
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Protein TIC 20, chloroplastic
Location	Chr6 : 7276492 .. 7279473 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGTTACGGCCAAATTGATGAGACAAAGTCTTAGAAGTCGTATTTAGGTAAAAAAATCCAAACAAAACCCTATCCCAACTTTGATTCCTGGCACAGCTGCCCACAAGCAACACCGCCCCATTTCAGCAGAGTGATTTCTAACCTGAGTCGACAATTCGGTAGCAACCCACCACCCGTATGGTCTCAAATCGGATTCCCCATATCCTGTAGAAGTCAGGTTTGTGAGTTCGAACCTATTCGATTCAATTTCAGGCAGAAGCTACATTTTTTGGATTAGTGGGTAGTCTCTGTTCATGATTACTTTACTCTATTGAACTTGATTCTAAGCATTGGGACTCTTTTGTATATAGGTTCCAGTTGCGCGATTCAAGTTTCAGGTTGACATTGGGTAAGAGATAGATTCATTTCAGTTAAGGTTTCAAATTGAATTTTAGGAATCTTGTTTAGAATAACTTAGCGCAGCGCTTTAGAATGTGTAGTAAGTAGTTCTTGTGAAGTCTGCTTGTCATGTTTTTATTTTTGTTTATATATAGAATTTGATTTTTATACTACTAAAACTGTTACGTATTCTGGTTTGTTATAAATACGTCATGATGTTGTGTTTTGCGATTCTTTTGCAACTATATGTTAGTATGGTGTTTATGTTGAAAACTTTTTCTTGCTGTTTTGGAGCTGAATTGTGGCCTGGAAAGTATGTGTAGAATGTGCACTGTGCACACATGGGACATTGTGAGATTGACTAGTGAGGAAGGGGTTAGAGGACCTTGAATATGTGATAAAGGAAAGTGGGGATAGTATCTGGGGCTTGGGTATAAGTTGCCAATGGTTGGTTTTGTGTTGACAAAAGTAAATGAATGCCATTGGTGTGTCATTATTGGATGTCAAGGCCCTAGGTATAGATGGTCAAGAGTCGACATGTCAATATTGGATAAGAGGAGTATTAAGACCTTGGCCATTGTCAAGAGTCAGTGTGATGTGGCTTTGGATAAGCATCGGGGTCTTGGATAGAGATTGTCAAGAGTTGAATTTTGAGTTCTGTAGAGAAGTATTGAGGTTTGGGTATGAATGGTCAGGAGCCAATGTGCCACGAAGGAGTATGTCTCGAAGATGTGTAAACGATGGAGTAAATTTGGAAAGAGCTAGAGAGAGACATTTGAGAATTTAGCGATATGTGAGAGCTTGTTAGAGCTTGAGTTAGAGGATGTGCATGATATAGAAATGATTCTGCATGATATTATTAGGAAAATATTTAGGTCTTGCCTGGGTTGCACCTATCTCTATGCAGCCCAGGCAGCTGTCCAATAAAGCTTTGCCAATCTTTTTTAAAATGATTTTTAGTACTTTTGTGTGTGTGTGTGTGTGTGTGTTGAGTATGCCATAGATATTACTTGTTTTCAGGTTTGCTGTGACTTGTGAGAACCATGAATACATGATTTTGTGATATATGTTGTATGTGATTGAAAATTTGAGGGGAAAATTGATATGACTTGCCAAATAAAATAAATATTTTTTGCATTATAAATAGACCATATGAATAATCCATTGGTGGAAGTACGTAAAAGTTCTTGCTCAATAATGAGTGAAGTATGACCACTTTCAAGATTGTTCAAGAAAGTAGATCCATTTGTTAGATAAGAGAGTTATCTAAATGAGAATGGTCCTTTAGAATTGGGGACAAAAACTTTTCTACCCAGAACAATCCCCAATACCTCATTAAAGCCAATGTATTCAATATTAGCGTTGTGTTTTTATGGATAAATTATATAGAAAAGAAATCATTAGAATATTTAAAATTTAAAAAATAGGCATTCCATTCTTTGTTTTTCATTGACTTCGTTTCTTACACTCTGCAATCTGCAATGATGTGGCTTTAAACAGGAAACTTAGATATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAGATTCCAAGTTATCTATTCCTAGCCGGTCTTCCATCTTACGTAATCCTCGTTGCAGTACACAAACTGCTAGCATTAGGAGTTCATGGGAACCTCATTTAAAGCATCAGACATGTTACTATGGAGGTGCATACAAAACCTTCCATAATCTTTATCTATCTTTTATTTGATCTTTATATTGAAACAATTATTACTGCGGTTTTGGAGATATCTCACTCGTAGTTTAATATAATCCTAGCTTCATATAAAGAAAGAATTATTACTGCAGTGGCAACATTAACATAAAGAAAATCTTGACTGACGTTTGTATCACTGTCATCTTAAAGAATTATATCTTCCTTTTCAGTAATTGATTCAAAGAAAGAATGGTGTGCTTCATTCTGTAATCCATTATTTTTCAAATGTAGGTCTCTTACCCTTAAAGCTACGTGCTGCATCTTCCCCTTTCTTAAGCGGGGATCTAGGTGGGTTGCTACATACGATCCCAAGGTTACCAGGGAAAAAAGTTATTAGCATGTCACCACGGGCAGCTAAAGATATCCCTACAAGTTATCGTTTCCCTCCAATGACCACAAAACCAAAATGGTGGTGGAGGACATTGGCATCCGTACCGTATCTAATGCCGTTTCACGAAACTTGGATGTATTCTGAAACAGCATACCACCTACACCCGTTCCTGGAGAACTTTGAATTCCTCACATACCCCTTTCTTGGAGCCCTTGGGAGACTACCAAGTTGGTTCTTAATGGCATATTTTTTTATTGCCTATCTAGGAATTGTAAGACGAAAGGAATGGCCTCACTTCTTTAGGTTTCACGTTGTTATGGGCATGTTGATGGAGATTGCCCTGCAAGTGATTGGTACAGTAAGTCGTTGGGTGCCCCTTTCCATATACTGGGGAAAAATTGGGATGCACTTTTGGACAGCTGTATCATTCGGTTTCATGTTCACGGTTGTTGAATGCGCACGCTGTGCTCTTGCAGGCATGTATGCGGAAGTCCCCTTTGCCTGTGAAGCAGCCTACATCCAAATACCATTTGATTAA

mRNA sequence

ATGGATAGTTACGGCCAAATTGATGAGACAAACTGCCCACAAGCAACACCGCCCCATTTCAGCAGAGTGATTTCTAACCTGAGTCGACAATTCGGTAGCAACCCACCACCCGTATGGTCTCAAATCGGATTCCCCATATCCTGTAGAAGTCAGGTTCCAGTTGCGCGATTCAAGTTTCAGCTGAATTGTGGCCTGGAAAGTATGTGTAGAATGTGCACTGTGCACACATGGGACATTGTGAGATTGACTAGTGAGGAAGGGGCCCTAGGTATAGATGGTCAAGAGTCGACATGTCAATATTGGATAAGAGGAGTATTAAGACCTTGGCCATTGTCAAGAGTCAGTGTGATGTGGCTTTGGATAAGCATCGGGGTCTTGGATAGAGATTGTCAAGAGTTGAATTTTGAGTTCTGTAGAGAAGTATTGAGGTTTGGGTATGAATGGTCAGGAGCCAATGTGCCACGAAGGAGAAACTTAGATATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAGATTCCAAGTTATCTATTCCTAGCCGGTCTTCCATCTTACGTAATCCTCGTTGCAGTACACAAACTGCTAGCATTAGGAGTTCATGGGAACCTCATTTAAAGCATCAGACATGTTACTATGGAGGTCTCTTACCCTTAAAGCTACGTGCTGCATCTTCCCCTTTCTTAAGCGGGGATCTAGGTGGGTTGCTACATACGATCCCAAGGTTACCAGGGAAAAAAGTTATTAGCATGTCACCACGGGCAGCTAAAGATATCCCTACAAGTTATCGTTTCCCTCCAATGACCACAAAACCAAAATGGTGGTGGAGGACATTGGCATCCGTACCGTATCTAATGCCGTTTCACGAAACTTGGATGTATTCTGAAACAGCATACCACCTACACCCGTTCCTGGAGAACTTTGAATTCCTCACATACCCCTTTCTTGGAGCCCTTGGGAGACTACCAAGTTGGTTCTTAATGGCATATTTTTTTATTGCCTATCTAGGAATTGTAAGACGAAAGGAATGGCCTCACTTCTTTAGGTTTCACGTTGTTATGGGCATGTTGATGGAGATTGCCCTGCAAGTGATTGGTACAGTAAGTCGTTGGGTGCCCCTTTCCATATACTGGGGAAAAATTGGGATGCACTTTTGGACAGCTGTATCATTCGGTTTCATGTTCACGGTTGTTGAATGCGCACGCTGTGCTCTTGCAGGCATGTATGCGGAAGTCCCCTTTGCCTGTGAAGCAGCCTACATCCAAATACCATTTGATTAA

Coding sequence (CDS)

ATGGATAGTTACGGCCAAATTGATGAGACAAACTGCCCACAAGCAACACCGCCCCATTTCAGCAGAGTGATTTCTAACCTGAGTCGACAATTCGGTAGCAACCCACCACCCGTATGGTCTCAAATCGGATTCCCCATATCCTGTAGAAGTCAGGTTCCAGTTGCGCGATTCAAGTTTCAGCTGAATTGTGGCCTGGAAAGTATGTGTAGAATGTGCACTGTGCACACATGGGACATTGTGAGATTGACTAGTGAGGAAGGGGCCCTAGGTATAGATGGTCAAGAGTCGACATGTCAATATTGGATAAGAGGAGTATTAAGACCTTGGCCATTGTCAAGAGTCAGTGTGATGTGGCTTTGGATAAGCATCGGGGTCTTGGATAGAGATTGTCAAGAGTTGAATTTTGAGTTCTGTAGAGAAGTATTGAGGTTTGGGTATGAATGGTCAGGAGCCAATGTGCCACGAAGGAGAAACTTAGATATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAGATTCCAAGTTATCTATTCCTAGCCGGTCTTCCATCTTACGTAATCCTCGTTGCAGTACACAAACTGCTAGCATTAGGAGTTCATGGGAACCTCATTTAAAGCATCAGACATGTTACTATGGAGGTCTCTTACCCTTAAAGCTACGTGCTGCATCTTCCCCTTTCTTAAGCGGGGATCTAGGTGGGTTGCTACATACGATCCCAAGGTTACCAGGGAAAAAAGTTATTAGCATGTCACCACGGGCAGCTAAAGATATCCCTACAAGTTATCGTTTCCCTCCAATGACCACAAAACCAAAATGGTGGTGGAGGACATTGGCATCCGTACCGTATCTAATGCCGTTTCACGAAACTTGGATGTATTCTGAAACAGCATACCACCTACACCCGTTCCTGGAGAACTTTGAATTCCTCACATACCCCTTTCTTGGAGCCCTTGGGAGACTACCAAGTTGGTTCTTAATGGCATATTTTTTTATTGCCTATCTAGGAATTGTAAGACGAAAGGAATGGCCTCACTTCTTTAGGTTTCACGTTGTTATGGGCATGTTGATGGAGATTGCCCTGCAAGTGATTGGTACAGTAAGTCGTTGGGTGCCCCTTTCCATATACTGGGGAAAAATTGGGATGCACTTTTGGACAGCTGTATCATTCGGTTTCATGTTCACGGTTGTTGAATGCGCACGCTGTGCTCTTGCAGGCATGTATGCGGAAGTCCCCTTTGCCTGTGAAGCAGCCTACATCCAAATACCATTTGATTAA

Homology

[Close]

BLAST of CSPI06G08640 vs. Swiss-Prot
Match: TI201_ARATH (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 9.8e-95
Identity = 155/206 (75.24%), Postives = 185/206 (89.81%), Query Frame = 1


Query: 223 LRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRTLA 282
           L A+SS  L+G+ G L  T+P LP ++   ++PRA+KD+P+S+RFPPMT KP+WWWRTLA
Sbjct: 69  LSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQWWWRTLA 128

Query: 283 SVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGIVR 342
            +PYLMP HETWMY+ETAYHLHPFLE+FEFLTYPFLGA+GRLPSWFLMAYFF+AYLGIVR
Sbjct: 129 CLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGIVR 188

Query: 343 RKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVVEC 402
           RKEWPHFFRFHVVMGML+EIALQVIGTVS+W+PL +YWGK GMHFWTAV+F ++FTV+E 
Sbjct: 189 RKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAYLFTVLES 248

Query: 403 ARCALAGMYAEVPFACEAAYIQIPFD 429
            RCALAGMYA++PF C+AAYIQIP+D
Sbjct: 249 IRCALAGMYADIPFVCDAAYIQIPYD 274

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BLAST of CSPI06G08640 vs. Swiss-Prot
Match: TIC20_PEA (Protein TIC 20, chloroplastic OS=Pisum sativum GN=TIC20 PE=1 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.7e-78
Identity = 149/268 (55.60%), Postives = 183/268 (68.28%), Query Frame = 1


Query: 161 MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 220
           MI NG T   G     +   IP++ ++          +SIRS W   L+++     G+  
Sbjct: 1   MIQNGGTVSQGSVLCYA-CQIPAKVAV----------SSIRSFWGHSLENKP---RGMTF 60

Query: 221 LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 280
             + A SS  LSG    L  TIP LP     S +PRA KD  + +RFPPMT KP+WWWRT
Sbjct: 61  TDMSATSSLLLSGGQNFLSRTIPVLPTLHKSSTTPRATKD-SSGFRFPPMTKKPRWWWRT 120

Query: 281 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 340
           L+ +PYL+PFH+ WMY+ TAYHLHPF+  F+ +TYPFL A+G LP W L+AYF IAYL I
Sbjct: 121 LSCIPYLLPFHQAWMYARTAYHLHPFIPYFQPMTYPFLMAIGTLPRWSLIAYFLIAYLTI 180

Query: 341 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 400
           VRRKEWPHFFRFHV +GML+EIALQV G VSRW+P S YWGK+GMHFWT   F F+FT +
Sbjct: 181 VRRKEWPHFFRFHVAVGMLIEIALQVTGIVSRWMPRSFYWGKLGMHFWTTAFFVFLFTTI 240

Query: 401 ECARCALAGMYAEVPFACEAAYIQIPFD 429
           EC RCAL GMYA+VPF C+AAYIQIP +
Sbjct: 241 ECIRCALVGMYADVPFVCDAAYIQIPHE 253

[Close]

BLAST of CSPI06G08640 vs. Swiss-Prot
Match: TI204_ARATH (Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana GN=TIC20-IV PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-36
Identity = 75/176 (42.61%), Postives = 112/176 (63.64%), Query Frame = 1


Query: 256 RAAKDIPTSYRFPPMTTKPKWWWRTLASVPYLMPFHETWMYSETAYHLHPFLENFEFL-- 315
           R AKD     + P +  +P+WWWRTLA VPYL+        S+  +++ PFLE  + +  
Sbjct: 104 RVAKDDFFKIKLPKIAERPEWWWRTLACVPYLISLQ----ISDVGFYVQPFLEKHDAIGD 163

Query: 316 -TYPFLGALGRLPSWFLMAYFFIAYLGIVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSR 375
             Y   GA+ R P+WF M Y ++ Y+ +V+ KE PH+ RFH++MGML+E ALQVI   S 
Sbjct: 164 MIYFIPGAINRWPTWFFMVYCYLGYMWVVKNKELPHYLRFHMMMGMLLETALQVIWCTSN 223

Query: 376 WVPLSIYWGKIGMHFWTAVSFGFMFTVVECARCALAGMYAEVPFACEAAYIQIPFD 429
           + PL  + G+ GM++W A+ F ++  ++EC RCALAG+YA++PF  +AA I   F+
Sbjct: 224 FFPLIHFKGRFGMYYWMAIGFTYICLLLECIRCALAGVYAQIPFMTDAASIHTLFN 275

[Close]

BLAST of CSPI06G08640 vs. TrEMBL
Match: A0A0A0KFP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108490 PE=4 SV=1)

HSP 1 Score: 563.5 bits (1451), Expect = 2.2e-157
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 1


Query: 161 MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 220
           MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP
Sbjct: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 221 LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 280
           LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT
Sbjct: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120

Query: 281 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 340
           LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI
Sbjct: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180

Query: 341 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 400
           VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV
Sbjct: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240

Query: 401 ECARCALAGMYAEVPFACEAAYIQIPFD 429
           ECARCALAGMYAEVPFACEAAYIQIPFD
Sbjct: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268

[Close]

BLAST of CSPI06G08640 vs. TrEMBL
Match: A0A0B0P675_GOSAR (Protein TIC 20-I, chloroplastic-like protein OS=Gossypium arboreum GN=F383_07397 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 4.3e-105
Identity = 187/271 (69.00%), Postives = 219/271 (80.81%), Query Frame = 1


Query: 161 MILNGCTTPTGCFFSDSKLS--IPSRSSILRNPRCSTQTASI-RSSWEPHLKHQTCYYGG 220
           MIL+G   P G     S+LS   P  S     PR ST  A   RSSW+     ++    G
Sbjct: 1   MILHGSCMPFGGVSMSSRLSKPFPCTSVFASIPRFSTTDALYTRSSWKQDQDSKSWQVKG 60

Query: 221 LLPLKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWW 280
           L PL L AAS+P LSGDLGGL  T+P  P ++  S+ PRA+KD+P S+R+PPMT KPKWW
Sbjct: 61  LPPLHLSAASTPLLSGDLGGLALTVPLFPRRRSSSLVPRASKDVPYSFRYPPMTKKPKWW 120

Query: 281 WRTLASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAY 340
           WR+LA +PYLMP HETWMY+ETAYHLHPFLE+FEFLTYPFLGA+GRLPSWFLMAYFF+AY
Sbjct: 121 WRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAY 180

Query: 341 LGIVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMF 400
           LG+VRRKEWPHFFRFHVVMGML+EIALQVIGTVSRW+PL+IYWGKIGMHFWTAV+F ++F
Sbjct: 181 LGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAIYWGKIGMHFWTAVAFAYLF 240

Query: 401 TVVECARCALAGMYAEVPFACEAAYIQIPFD 429
           TV+EC RCALAGMYA++PFAC+AAYIQIP+D
Sbjct: 241 TVLECIRCALAGMYADIPFACDAAYIQIPYD 271

[Close]

BLAST of CSPI06G08640 vs. TrEMBL
Match: A0A0D2TBL2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G213200 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 7.3e-105
Identity = 186/271 (68.63%), Postives = 218/271 (80.44%), Query Frame = 1


Query: 161 MILNGCTTPTGCFFSDSKLS--IPSRSSILRNPRCS-TQTASIRSSWEPHLKHQTCYYGG 220
           MIL+G   P G     S+LS   P  S     PR S T     RSSW+     ++    G
Sbjct: 1   MILHGSCMPFGGVSMSSRLSKPFPCTSVFASIPRFSITDALYTRSSWKQDQDSKSWQVKG 60

Query: 221 LLPLKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWW 280
           L PL L AAS+P LSGDLGGL  T+P  P ++  S+ PRA+KD+P S+R+PPMT KPKWW
Sbjct: 61  LPPLHLSAASTPLLSGDLGGLALTVPSFPRRRSSSLVPRASKDVPYSFRYPPMTKKPKWW 120

Query: 281 WRTLASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAY 340
           WR+LA +PYLMP HETWMY+ETAYHLHPFLE+FEFLTYPFLGA+GRLPSWFLMAYFF+AY
Sbjct: 121 WRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAY 180

Query: 341 LGIVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMF 400
           LG+VRRKEWPHFFRFHVVMGML+EIALQVIGTVSRW+PL+IYWGKIGMHFWTAV+F ++F
Sbjct: 181 LGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAIYWGKIGMHFWTAVAFAYLF 240

Query: 401 TVVECARCALAGMYAEVPFACEAAYIQIPFD 429
           TV+EC RCALAGMYA++PFAC+AAYIQIP+D
Sbjct: 241 TVLECIRCALAGMYADIPFACDAAYIQIPYD 271

[Close]

BLAST of CSPI06G08640 vs. TrEMBL
Match: A0A061FS33_THECC (Translocon at the inner envelope membrane of chloroplasts 20 isoform 1 OS=Theobroma cacao GN=TCM_045299 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 2.1e-104
Identity = 183/272 (67.28%), Postives = 219/272 (80.51%), Query Frame = 1


Query: 161 MILNGCTTPTGCFFSDSKLS--IPSRSSILRNPRCSTQTA--SIRSSWEPHLKHQTCYYG 220
           MI +GCT P+GC    S+LS  +P  S      R  T  A   IRSSW      ++    
Sbjct: 1   MIPHGCTMPSGCASMSSRLSKPMPCSSVFASISRLPTTDALLRIRSSWMLDQDSKSWMLK 60

Query: 221 GLLPLKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKW 280
           GL PL L AAS+P L GDLGGL  T+P LP ++  ++ PRA+KD+P S+R+P MT KPKW
Sbjct: 61  GLPPLHLSAASTPLLCGDLGGLSQTVPSLPTRRSSTLVPRASKDVPYSFRYPTMTKKPKW 120

Query: 281 WWRTLASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIA 340
           WWR+LA +PYLMP HETWMY+ETAYHLHPFLE+FEFLTYPFLGA+GRLPSWFLMAYFF+A
Sbjct: 121 WWRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA 180

Query: 341 YLGIVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFM 400
           YLGIVRRKEWPHFFRFHVVMGML+EIALQVIGTVSRW+PL++YWGK+GMHFWTAV+F ++
Sbjct: 181 YLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240

Query: 401 FTVVECARCALAGMYAEVPFACEAAYIQIPFD 429
           FTV+EC RCALAGMY+++PF C+AAYIQIP+D
Sbjct: 241 FTVLECIRCALAGMYSDIPFVCDAAYIQIPYD 272

[Close]

BLAST of CSPI06G08640 vs. TrEMBL
Match: A9PAD4_POPTR (Tic20 family protein OS=Populus trichocarpa GN=POPTR_0002s03320g PE=2 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 5.2e-103
Identity = 182/272 (66.91%), Postives = 218/272 (80.15%), Query Frame = 1


Query: 161 MILNGCTTPTGCFFSDSKL--SIPSRSSILRNPRCSTQTA--SIRSSWEPHLKHQTCYYG 220
           MILNGC  P+G  FS ++   ++P        P  + + A  S R+S E HL+ ++    
Sbjct: 1   MILNGCAMPSGSAFSSTRTCKTMPGIMVSDHVPYTTARAALLSSRASLERHLESKSWSSR 60

Query: 221 GLLPLKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKW 280
           G L L L AAS+P LSGD  G  H IP  P ++     PRA+KD+P S+RFPPMT KP+W
Sbjct: 61  GFLSLHLSAASTPLLSGDYCGFSHYIPTFPRQRRSYSCPRASKDVPYSFRFPPMTKKPRW 120

Query: 281 WWRTLASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIA 340
           WWRTLA +PYLMP HETWMY+ETAYHLHPFLE+FEFLTYPFLGA+GRLPSWFLMAYFF+A
Sbjct: 121 WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA 180

Query: 341 YLGIVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFM 400
           YLG+VRRKEWPHFFRFHVVMGML+EIALQVIGTVSRW+PL++YWGK+GMHFWTAV+F ++
Sbjct: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240

Query: 401 FTVVECARCALAGMYAEVPFACEAAYIQIPFD 429
           FTV+EC RCALAGMYA+VPFAC+AAYIQIP+D
Sbjct: 241 FTVLECIRCALAGMYADVPFACDAAYIQIPYD 272

[Close]

BLAST of CSPI06G08640 vs. TAIR10
Match: AT1G04940.1 (AT1G04940.1 translocon at the inner envelope membrane of chloroplasts 20)

HSP 1 Score: 348.6 bits (893), Expect = 5.5e-96
Identity = 155/206 (75.24%), Postives = 185/206 (89.81%), Query Frame = 1


Query: 223 LRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRTLA 282
           L A+SS  L+G+ G L  T+P LP ++   ++PRA+KD+P+S+RFPPMT KP+WWWRTLA
Sbjct: 69  LSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQWWWRTLA 128

Query: 283 SVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGIVR 342
            +PYLMP HETWMY+ETAYHLHPFLE+FEFLTYPFLGA+GRLPSWFLMAYFF+AYLGIVR
Sbjct: 129 CLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGIVR 188

Query: 343 RKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVVEC 402
           RKEWPHFFRFHVVMGML+EIALQVIGTVS+W+PL +YWGK GMHFWTAV+F ++FTV+E 
Sbjct: 189 RKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAYLFTVLES 248

Query: 403 ARCALAGMYAEVPFACEAAYIQIPFD 429
            RCALAGMYA++PF C+AAYIQIP+D
Sbjct: 249 IRCALAGMYADIPFVCDAAYIQIPYD 274

[Close]

BLAST of CSPI06G08640 vs. TAIR10
Match: AT1G04945.3 (AT1G04945.3 HIT-type Zinc finger family protein)

HSP 1 Score: 313.2 bits (801), Expect = 2.6e-85
Identity = 141/191 (73.82%), Postives = 167/191 (87.43%), Query Frame = 1


Query: 223 LRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRTLA 282
           L A+SS  L+G+ G L  T+P LP ++   ++PRA+KD+P+S+RFPPMT KP+WWWRTLA
Sbjct: 69  LSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQWWWRTLA 128

Query: 283 SVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGIVR 342
            +PYLMP HETWMY+ETAYHLHPFLE+FEFLTYPFLGA+GRLPSWFLMAYFF+AYLGIVR
Sbjct: 129 CLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGIVR 188

Query: 343 RKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVVEC 402
           RKEWPHFFRFHVVMGML+EIALQVIGTVS+W+PL +YWGK GMHFWTAV+F ++FTV+E 
Sbjct: 189 RKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAYLFTVLES 248

Query: 403 ARCALAGMYAE 414
            RCALA    E
Sbjct: 249 IRCALADSVCE 259

[Close]

BLAST of CSPI06G08640 vs. TAIR10
Match: AT4G03320.1 (AT4G03320.1 translocon at the inner envelope membrane of chloroplasts 20-IV)

HSP 1 Score: 155.2 bits (391), Expect = 8.9e-38
Identity = 75/176 (42.61%), Postives = 112/176 (63.64%), Query Frame = 1


Query: 256 RAAKDIPTSYRFPPMTTKPKWWWRTLASVPYLMPFHETWMYSETAYHLHPFLENFEFL-- 315
           R AKD     + P +  +P+WWWRTLA VPYL+        S+  +++ PFLE  + +  
Sbjct: 104 RVAKDDFFKIKLPKIAERPEWWWRTLACVPYLISLQ----ISDVGFYVQPFLEKHDAIGD 163

Query: 316 -TYPFLGALGRLPSWFLMAYFFIAYLGIVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSR 375
             Y   GA+ R P+WF M Y ++ Y+ +V+ KE PH+ RFH++MGML+E ALQVI   S 
Sbjct: 164 MIYFIPGAINRWPTWFFMVYCYLGYMWVVKNKELPHYLRFHMMMGMLLETALQVIWCTSN 223

Query: 376 WVPLSIYWGKIGMHFWTAVSFGFMFTVVECARCALAGMYAEVPFACEAAYIQIPFD 429
           + PL  + G+ GM++W A+ F ++  ++EC RCALAG+YA++PF  +AA I   F+
Sbjct: 224 FFPLIHFKGRFGMYYWMAIGFTYICLLLECIRCALAGVYAQIPFMTDAASIHTLFN 275

[Close]

BLAST of CSPI06G08640 vs. NCBI nr
Match: gi|449445477|ref|XP_004140499.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 563.5 bits (1451), Expect = 3.1e-157
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 1


Query: 161 MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 220
           MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP
Sbjct: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 221 LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 280
           LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT
Sbjct: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120

Query: 281 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 340
           LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI
Sbjct: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180

Query: 341 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 400
           VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV
Sbjct: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240

Query: 401 ECARCALAGMYAEVPFACEAAYIQIPFD 429
           ECARCALAGMYAEVPFACEAAYIQIPFD
Sbjct: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268

[Close]

BLAST of CSPI06G08640 vs. NCBI nr
Match: gi|659119592|ref|XP_008459737.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis melo])

HSP 1 Score: 514.6 bits (1324), Expect = 1.6e-142
Identity = 235/268 (87.69%), Postives = 255/268 (95.15%), Query Frame = 1


Query: 161 MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 220
           MILNGCTTPTGCFFS+SKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 221 LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 280
           LKL AASSP LSGDLGGLL TIPRLPGKK ISM+PRA+KD+PTSYR+PPMTTKPKWWWRT
Sbjct: 61  LKLNAASSPLLSGDLGGLLSTIPRLPGKKNISMTPRASKDVPTSYRYPPMTTKPKWWWRT 120

Query: 281 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 340
           LA +PYLMP HETWMY ETAYHLHPFLE+FEFLTYPFLGA+GRLPSWFL+AYFF+AYLG+
Sbjct: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLIAYFFVAYLGV 180

Query: 341 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 400
           VRRKEWPHF RFHVVMGMLMEI+LQVIGT+SRW+P+S+YWGK+GMHFWTAV F +MFTV+
Sbjct: 181 VRRKEWPHFLRFHVVMGMLMEISLQVIGTMSRWLPISVYWGKLGMHFWTAVCFAYMFTVL 240

Query: 401 ECARCALAGMYAEVPFACEAAYIQIPFD 429
           EC RCALAGMYA+VPF C AAYIQIPFD
Sbjct: 241 ECMRCALAGMYADVPFVCNAAYIQIPFD 268

[Close]

BLAST of CSPI06G08640 vs. NCBI nr
Match: gi|1009135364|ref|XP_015884949.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 393.3 bits (1009), Expect = 5.5e-106
Identity = 187/274 (68.25%), Postives = 224/274 (81.75%), Query Frame = 1


Query: 159 LDMILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTA----SIRSSWEPHLKHQTCY 218
           L MILNGC  PT C   +S++    RSS+   PRCS  +      +++S+ P +  +T +
Sbjct: 50  LAMILNGCIMPTVCVSVNSRVD---RSSV---PRCSVSSCIPRLQVKASF-PSVSSRTPH 109

Query: 219 YGGLLPLKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKP 278
              +  L L AAS+P LSGD G LLHTIP LP +    MSPRA+KD+P SYR+PPMT KP
Sbjct: 110 QEAMPVLHLAAASTPLLSGDRGSLLHTIPMLPRRCGSRMSPRASKDVPYSYRYPPMTKKP 169

Query: 279 KWWWRTLASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFF 338
           +WWWRTLA +PYLMPFHETWMY+ETAYHLHPFLE+FEFLTYPFLGA+G LPSWFLMAYFF
Sbjct: 170 RWWWRTLACLPYLMPFHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGTLPSWFLMAYFF 229

Query: 339 IAYLGIVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFG 398
           +AYLG+VRRKEWPHFFRFHVVMGML+EIALQVIGTVSRW+PL++YWGK+GMHFWTAV+F 
Sbjct: 230 VAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFA 289

Query: 399 FMFTVVECARCALAGMYAEVPFACEAAYIQIPFD 429
           ++FTV+EC RCALAGMYA+VPF C+AAYIQIP+D
Sbjct: 290 YLFTVIECIRCALAGMYADVPFVCDAAYIQIPYD 316

[Close]

BLAST of CSPI06G08640 vs. NCBI nr
Match: gi|1009168299|ref|XP_015902584.1| (PREDICTED: protein TIC 20-I, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 391.7 bits (1005), Expect = 1.6e-105
Identity = 186/272 (68.38%), Postives = 223/272 (81.99%), Query Frame = 1


Query: 161 MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTA----SIRSSWEPHLKHQTCYYG 220
           MILNGC  PT C   +S++    RSS+   PRCS  +      +++S+ P +  +T +  
Sbjct: 1   MILNGCIMPTICVSVNSRVD---RSSV---PRCSVSSCIPRLQVKASF-PSVSSRTPHQE 60

Query: 221 GLLPLKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKW 280
            +  L L AAS+P LSGD G LLHTIP LP +    MSPRA+KD+P SYR+PPMT KP+W
Sbjct: 61  AMPVLHLAAASTPLLSGDRGSLLHTIPMLPRRCGSRMSPRASKDVPYSYRYPPMTKKPRW 120

Query: 281 WWRTLASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIA 340
           WWRTLA +PYLMPFHETWMY+ETAYHLHPFLE+FEFLTYPFLGA+G LPSWFLMAYFF+A
Sbjct: 121 WWRTLACLPYLMPFHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGTLPSWFLMAYFFVA 180

Query: 341 YLGIVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFM 400
           YLG+VRRKEWPHFFRFHVVMGML+EIALQVIGTVSRW+PL++YWGK+GMHFWTAV+F ++
Sbjct: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240

Query: 401 FTVVECARCALAGMYAEVPFACEAAYIQIPFD 429
           FTV+EC RCALAGMYA+VPF C+AAYIQIP+D
Sbjct: 241 FTVIECIRCALAGMYADVPFVCDAAYIQIPYD 265

[Close]

BLAST of CSPI06G08640 vs. NCBI nr
Match: gi|728840939|gb|KHG20382.1| (Protein TIC 20-I, chloroplastic -like protein [Gossypium arboreum])

HSP 1 Score: 389.8 bits (1000), Expect = 6.1e-105
Identity = 187/271 (69.00%), Postives = 219/271 (80.81%), Query Frame = 1


Query: 161 MILNGCTTPTGCFFSDSKLS--IPSRSSILRNPRCSTQTASI-RSSWEPHLKHQTCYYGG 220
           MIL+G   P G     S+LS   P  S     PR ST  A   RSSW+     ++    G
Sbjct: 1   MILHGSCMPFGGVSMSSRLSKPFPCTSVFASIPRFSTTDALYTRSSWKQDQDSKSWQVKG 60

Query: 221 LLPLKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWW 280
           L PL L AAS+P LSGDLGGL  T+P  P ++  S+ PRA+KD+P S+R+PPMT KPKWW
Sbjct: 61  LPPLHLSAASTPLLSGDLGGLALTVPLFPRRRSSSLVPRASKDVPYSFRYPPMTKKPKWW 120

Query: 281 WRTLASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAY 340
           WR+LA +PYLMP HETWMY+ETAYHLHPFLE+FEFLTYPFLGA+GRLPSWFLMAYFF+AY
Sbjct: 121 WRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAY 180

Query: 341 LGIVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMF 400
           LG+VRRKEWPHFFRFHVVMGML+EIALQVIGTVSRW+PL+IYWGKIGMHFWTAV+F ++F
Sbjct: 181 LGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAIYWGKIGMHFWTAVAFAYLF 240

Query: 401 TVVECARCALAGMYAEVPFACEAAYIQIPFD 429
           TV+EC RCALAGMYA++PFAC+AAYIQIP+D
Sbjct: 241 TVLECIRCALAGMYADIPFACDAAYIQIPYD 271

The following BLAST results are available for this feature:

BLAST of CSPI06G08640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI201_ARATH	9.8e-95	75.24	Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1	[more]
TIC20_PEA	1.7e-78	55.60	Protein TIC 20, chloroplastic OS=Pisum sativum GN=TIC20 PE=1 SV=1	[more]
TI204_ARATH	1.6e-36	42.61	Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana GN=TIC20-IV PE=2 SV=1	[more]

BLAST of CSPI06G08640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFP3_CUCSA	2.2e-157	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108490 PE=4 SV=1	[more]
A0A0B0P675_GOSAR	4.3e-105	69.00	Protein TIC 20-I, chloroplastic-like protein OS=Gossypium arboreum GN=F383_07397...	[more]
A0A0D2TBL2_GOSRA	7.3e-105	68.63	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G213200 PE=4 SV=1	[more]
A0A061FS33_THECC	2.1e-104	67.28	Translocon at the inner envelope membrane of chloroplasts 20 isoform 1 OS=Theobr...	[more]
A9PAD4_POPTR	5.2e-103	66.91	Tic20 family protein OS=Populus trichocarpa GN=POPTR_0002s03320g PE=2 SV=1	[more]

BLAST of CSPI06G08640 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04940.1	5.5e-96	75.24	translocon at the inner envelope membrane of chloroplasts 20	[more]
AT1G04945.3	2.6e-85	73.82	HIT-type Zinc finger family protein	[more]
AT4G03320.1	8.9e-38	42.61	translocon at the inner envelope membrane of chloroplasts 20-IV	[more]

BLAST of CSPI06G08640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445477\|ref\|XP_004140499.1\|	3.1e-157	100.00	PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis sativus]	[more]
gi\|659119592\|ref\|XP_008459737.1\|	1.6e-142	87.69	PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis melo]	[more]
gi\|1009135364\|ref\|XP_015884949.1\|	5.5e-106	68.25	PREDICTED: protein TIC 20-I, chloroplastic-like [Ziziphus jujuba]	[more]
gi\|1009168299\|ref\|XP_015902584.1\|	1.6e-105	68.38	PREDICTED: protein TIC 20-I, chloroplastic-like [Ziziphus jujuba]	[more]
gi\|728840939\|gb\|KHG20382.1\|	6.1e-105	69.00	Protein TIC 20-I, chloroplastic -like protein [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005691	Tic20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045037	protein import into chloroplast stroma
biological_process	GO:0006626	protein targeting to mitochondrion
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009706	chloroplast inner membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008565	protein transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G08640.1	CSPI06G08640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 254..421 score: 1.4
IPR005691	Chloroplast protein import component Tic20	TIGRFAMs	TIGR00994	TIGR00994	coord: 161..428 score: 7.5E
None	No IPR available	PANTHER	PTHR33510	FAMILY NOT NAMED	coord: 161..428 score: 1.8E
None	No IPR available	PANTHER	PTHR33510:SF6	PROTEIN TIC 20-I, CHLOROPLASTIC	coord: 161..428 score: 1.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G08640	Cla006685	Watermelon (97103) v1	cpiwmB563
CSPI06G08640	Csa6G108470	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G08640	MELO3C022242	Melon (DHL92) v3.5.1	cpimeB436
CSPI06G08640	ClCG06G002850	Watermelon (Charleston Gray)	cpiwcgB503
CSPI06G08640	Lsi09G016630	Bottle gourd (USVL1VR-Ls)	cpilsiB401
CSPI06G08640	MELO3C022242.2	Melon (DHL92) v3.6.1	cpimedB435
CSPI06G08640	CsaV3_6G009010	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G08640	Cla97C06G112220	Watermelon (97103) v2	cpiwmbB495
CSPI06G08640	Bhi12G001931	Wax gourd	cpiwgoB549
CSPI06G08640	Cucsa.120750	Cucumber (Gy14) v1	cgycpiB156
CSPI06G08640	CmaCh17G004980	Cucurbita maxima (Rimu)	cmacpiB383
CSPI06G08640	CmoCh17G004710	Cucurbita moschata (Rifu)	cmocpiB372
CSPI06G08640	Cp4.1LG12g04260	Cucurbita pepo (Zucchini)	cpecpiB154
CSPI06G08640	Carg26671	Silver-seed gourd	carcpiB0936

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G08640	Silver-seed gourd	carcpiB0097
CSPI06G08640	Silver-seed gourd	carcpiB0637
CSPI06G08640	Cucurbita maxima (Rimu)	cmacpiB932
CSPI06G08640	Cucurbita maxima (Rimu)	cmacpiB918
CSPI06G08640	Cucurbita moschata (Rifu)	cmocpiB898
CSPI06G08640	Cucurbita moschata (Rifu)	cmocpiB911
CSPI06G08640	Cucurbita pepo (Zucchini)	cpecpiB332
CSPI06G08640	Cucurbita pepo (Zucchini)	cpecpiB329
CSPI06G08640	Bottle gourd (USVL1VR-Ls)	cpilsiB404
CSPI06G08640	Cucumber (Gy14) v2	cgybcpiB288