CmoCh16G002140 (gene) Cucurbita moschata (Rifu)

NameCmoCh16G002140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 943159 .. 943590 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGTATTTTGTTTGCCCACAAAATGGCTGCCAAGAGATATTTCATGTGGCAAATAGTTTTGGTTCTAATAGCCATTCTGGCTCAACGTGTTGCACCAAGGCATTTGGGTTCTGCTCCTCTCACTGCTTGTAAGTGGATCCTACCCATTTAAAACAATTTCAGACAACACAATTTCTAGGTACCCATGAATCTAATTACTTGTTTGTTTGTTCTTACGATGTTTTCAGACAAGGATGTTGTGGGAATCAAGAACATAAGAAAGGTTGGTCGACCCATCCCAAGGAAAGATAAGCCAAGGGGTGGCAATTTCTAAGCACATTGGAGGATGTCAAATCTTCTTAACTTTTTTTTACCTATAACTAGTTTCTATTTCCAATCTCCTTTATCCACATGAAGTGATATTAATAAACATTACTACTTCCCTTTCCCTA

mRNA sequence

TTAGTATTTTGTTTGCCCACAAAATGGCTGCCAAGAGATATTTCATGTGGCAAATAGTTTTGGTTCTAATAGCCATTCTGGCTCAACGTGTTGCACCAAGGCATTTGGGTTCTGCTCCTCTCACTGCTTACAAGGATGTTGTGGGAATCAAGAACATAAGAAAGGTTGGTCGACCCATCCCAAGGAAAGATAAGCCAAGGGGTGGCAATTTCTAAGCACATTGGAGGATGTCAAATCTTCTTAACTTTTTTTTACCTATAACTAGTTTCTATTTCCAATCTCCTTTATCCACATGAAGTGATATTAATAAACATTACTACTTCCCTTTCCCTA

Coding sequence (CDS)

ATGGCTGCCAAGAGATATTTCATGTGGCAAATAGTTTTGGTTCTAATAGCCATTCTGGCTCAACGTGTTGCACCAAGGCATTTGGGTTCTGCTCCTCTCACTGCTTACAAGGATGTTGTGGGAATCAAGAACATAAGAAAGGTTGGTCGACCCATCCCAAGGAAAGATAAGCCAAGGGGTGGCAATTTCTAA
BLAST of CmoCh16G002140 vs. TrEMBL
Match: A0A0A0KW87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022260 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.8e-13
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 1

Query: 1  MAAKRYFMWQIVLVLIAILAQRVAPRHLGSAPLTAYKDVVGIKNIRKVGRPIPRKDKPRG 60
          MA+K   +WQ+V+VL+AIL+  VA RH  S P TAYKD VGIK+I+KV +P+P+KDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNF 64
          GN+
Sbjct: 61 GNY 63

BLAST of CmoCh16G002140 vs. NCBI nr
Match: gi|700197981|gb|KGN53139.1| (hypothetical protein Csa_4G022260 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 6.8e-13
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 1

Query: 1  MAAKRYFMWQIVLVLIAILAQRVAPRHLGSAPLTAYKDVVGIKNIRKVGRPIPRKDKPRG 60
          MA+K   +WQ+V+VL+AIL+  VA RH  S P TAYKD VGIK+I+KV +P+P+KDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNF 64
          GN+
Sbjct: 61 GNY 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KW87_CUCSA4.8e-1361.90Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022260 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700197981|gb|KGN53139.1|6.8e-1361.90hypothetical protein Csa_4G022260 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G002140.1CmoCh16G002140.1mRNA


The following gene(s) are paralogous to this gene:

None