CmoCh07G005160 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G005160
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr07 : 2350658 .. 2350873 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCATCGGAGCGAGCTGCGCTAGGGTTTATGTAATGAAGAAGAAAGTGGAGGAGAAACTTCAGAGGATGGAGCAGGAGAAAGCTGGGAGAAGGGAAGACTTGGTCAAACCTTCAAAAACCGCCCATCACGGCGGCGCTTTCGCCGGAATAACCATTAAAAAAGTCCATCCCGGTACTGTAATTTCGGTTCCGGCAAGCAATATTTCCTGA

mRNA sequence

ATGTCGTCCATCGGAGCGAGCTGCGCTAGGGTTTATGTAATGAAGAAGAAAGTGGAGGAGAAACTTCAGAGGATGGAGCAGGAGAAAGCTGGGAGAAGGGAAGACTTGGTCAAACCTTCAAAAACCGCCCATCACGGCGGCGCTTTCGCCGGAATAACCATTAAAAAAGTCCATCCCGGTACTGTAATTTCGGTTCCGGCAAGCAATATTTCCTGA

Coding sequence (CDS)

ATGTCGTCCATCGGAGCGAGCTGCGCTAGGGTTTATGTAATGAAGAAGAAAGTGGAGGAGAAACTTCAGAGGATGGAGCAGGAGAAAGCTGGGAGAAGGGAAGACTTGGTCAAACCTTCAAAAACCGCCCATCACGGCGGCGCTTTCGCCGGAATAACCATTAAAAAAGTCCATCCCGGTACTGTAATTTCGGTTCCGGCAAGCAATATTTCCTGA
Homology
[Close]
BLAST of CmoCh07G005160 vs. TrEMBL
Match: A0A0A0KGB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500720 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-17
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 1  MSSIGASCARVYVMKKKVEEKLQRMEQEKAGRREDLVKPSKTAHH-GGAFAGITIKKVHP 60
          MSS+GASCARVYVMKKK EEKLQRMEQE++GRRED VKP KT+HH  G  AG + KKVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTVISVPASNIS 72
          GT+  + A++ S
Sbjct: 61 GTLFGLQATSNS 72

[Close]
BLAST of CmoCh07G005160 vs. NCBI nr
Match: gi|700193576|gb|KGN48780.1| (hypothetical protein Csa_6G500720 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-17
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 1  MSSIGASCARVYVMKKKVEEKLQRMEQEKAGRREDLVKPSKTAHH-GGAFAGITIKKVHP 60
          MSS+GASCARVYVMKKK EEKLQRMEQE++GRRED VKP KT+HH  G  AG + KKVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTVISVPASNIS 72
          GT+  + A++ S
Sbjct: 61 GTLFGLQATSNS 72

The following BLAST results are available for this feature:
BLAST of CmoCh07G005160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G005160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGB8_CUCSA2.1e-1769.44Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500720 PE=4 SV=1[more]
BLAST of CmoCh07G005160 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh07G005160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193576|gb|KGN48780.1|3.0e-1769.44hypothetical protein Csa_6G500720 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G005160.1CmoCh07G005160.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 8..35
scor
NoneNo IPR availablePANTHERPTHR34950FAMILY NOT NAMEDcoord: 1..65
score: 1.6
NoneNo IPR availablePANTHERPTHR34950:SF2SUBFAMILY NOT NAMEDcoord: 1..65
score: 1.6