Csa6G500720 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G500720
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 25067247 .. 25067900 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCCACCGATTGAACAAATTAAAAGCCCACTGAAACATTTGTAGAAATTTCTTCATTTCATTTCCTTTTCTTCTGTATAAACCATGTCCTCCATGGGAGCTAGCTGCGCTAGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTGCAGAGGATGGAGCAGGAGAGATCTGGCAGGAGAGAAGATTCCGTCAAACCTCCAAAAACTTCCCATCACGCCGCCGGCGGAATTGCCGGAAAATCCAGTAAAAAAGTCCATCCGGGTACCCTATTTGGGCTTCAGGCCACCTCTAATTCCTGAAAACAGGCCTCCTCTGGCTTTTACTTTCTCAATAGAAATTTCATGCCAGAGTCGAAGCTTTTAGTGCTTTTTTTCTTTTCTTTTCTTTTTCTACGTCTTGTGTAAATTTTTGAACTTCCTTCGGTGATGTGATCTGGCTAGAAATCAAACTAAGGAAGGTACAAATTATGGGTTATATCTTCTTCTTTCTCTCTTCGTCTCCATTTTTGGTGTGAATTTTGGAGCGTTGTTGAAATATAGTTCTAGTTCATTAAAACACGTTAACAAGTCAAAAAATGATTCTGATACTTCTGAACATGGGAGAACTGGTTAATTAATTCGTAGTAATTATGCATTCAATTGTAGAATTTGT

mRNA sequence

ATGTCCTCCATGGGAGCTAGCTGCGCTAGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTGCAGAGGATGGAGCAGGAGAGATCTGGCAGGAGAGAAGATTCCGTCAAACCTCCAAAAACTTCCCATCACGCCGCCGGCGGAATTGCCGGAAAATCCAGTAAAAAAGTCCATCCGGGTACCCTATTTGGGCTTCAGGCCACCTCTAATTCCTGA

Coding sequence (CDS)

ATGTCCTCCATGGGAGCTAGCTGCGCTAGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTGCAGAGGATGGAGCAGGAGAGATCTGGCAGGAGAGAAGATTCCGTCAAACCTCCAAAAACTTCCCATCACGCCGCCGGCGGAATTGCCGGAAAATCCAGTAAAAAAGTCCATCCGGGTACCCTATTTGGGCTTCAGGCCACCTCTAATTCCTGA

Protein sequence

MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHPGTLFGLQATSNS*
Homology
[Close]
BLAST of Csa6G500720 vs. TrEMBL
Match: A0A0A0KGB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500720 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.4e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60
          MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTLFGLQATSNS 73
          GTLFGLQATSNS
Sbjct: 61 GTLFGLQATSNS 72

[Close]
BLAST of Csa6G500720 vs. TrEMBL
Match: B9HFQ4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s06110g PE=4 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 8.5e-06
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1 

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60
          MSS+G +CA VYV +K+  EK++RME+ER  R E  V+  K    A+   +GK  KKVHP
Sbjct: 1  MSSIGVACAEVYVKQKRQMEKIKRMEEERVRRGESVVEEEKVGGSAS--TSGKCKKKVHP 59

Query: 61 G 62
          G
Sbjct: 61 G 59

[Close]
BLAST of Csa6G500720 vs. NCBI nr
Match: gi|700193576|gb|KGN48780.1| (hypothetical protein Csa_6G500720 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 3.4e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60
          MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTLFGLQATSNS 73
          GTLFGLQATSNS
Sbjct: 61 GTLFGLQATSNS 72

The following BLAST results are available for this feature:
BLAST of Csa6G500720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGB8_CUCSA2.4e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500720 PE=4 SV=1[more]
B9HFQ4_POPTR8.5e-0649.18Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s06110g PE=4 SV=2[more]
BLAST of Csa6G500720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193576|gb|KGN48780.1|3.4e-32100.00hypothetical protein Csa_6G500720 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU084577cucumber EST collection version 3.0transcribed_cluster
CU146528cucumber EST collection version 3.0transcribed_cluster
CU152426cucumber EST collection version 3.0transcribed_cluster
CU160122cucumber EST collection version 3.0transcribed_cluster
CU171669cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G500720.1Csa6G500720.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU146528CU146528transcribed_cluster
CU084577CU084577transcribed_cluster
CU160122CU160122transcribed_cluster
CU171669CU171669transcribed_cluster
CU152426CU152426transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 8..35
scor
NoneNo IPR availablePANTHERPTHR34950FAMILY NOT NAMEDcoord: 1..67
score: 2.7
NoneNo IPR availablePANTHERPTHR34950:SF2SUBFAMILY NOT NAMEDcoord: 1..67
score: 2.7