CmaCh07G005210 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh07G005210
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_6
LocationCma_Chr07 : 2249592 .. 2249807 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCATGGGAGCGAGCTGCGCTAGAGTTTATGTAATGAAGAAGAAAGTGGAGGAGAAACTTCAGAGGATGGAGCAGGAGAAAGCTGGGAGAAGGGAAGACTTGGTCAAACCTTCAAAAACCGCCCATCACGCCGGCGCTTTCGCCGGAAAAATCACTAAAAAAGTCTATCCCGGTACTGTAATTTTGGTTCCGGCAAGCAATATTTCGTGA

mRNA sequence

ATGTCGTCCATGGGAGCGAGCTGCGCTAGAGTTTATGTAATGAAGAAGAAAGTGGAGGAGAAACTTCAGAGGATGGAGCAGGAGAAAGCTGGGAGAAGGGAAGACTTGGTCAAACCTTCAAAAACCGCCCATCACGCCGGCGCTTTCGCCGGAAAAATCACTAAAAAAGTCTATCCCGGTACTGTAATTTTGGTTCCGGCAAGCAATATTTCGTGA

Coding sequence (CDS)

ATGTCGTCCATGGGAGCGAGCTGCGCTAGAGTTTATGTAATGAAGAAGAAAGTGGAGGAGAAACTTCAGAGGATGGAGCAGGAGAAAGCTGGGAGAAGGGAAGACTTGGTCAAACCTTCAAAAACCGCCCATCACGCCGGCGCTTTCGCCGGAAAAATCACTAAAAAAGTCTATCCCGGTACTGTAATTTTGGTTCCGGCAAGCAATATTTCGTGA

Protein sequence

MSSMGASCARVYVMKKKVEEKLQRMEQEKAGRREDLVKPSKTAHHAGAFAGKITKKVYPGTVILVPASNIS
Homology
[Close]
BLAST of CmaCh07G005210 vs. TrEMBL
Match: A0A0A0KGB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500720 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.5e-18
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 1 

Query: 1  MSSMGASCARVYVMKKKVEEKLQRMEQEKAGRREDLVKPSKTAHH-AGAFAGKITKKVYP 60
          MSSMGASCARVYVMKKK EEKLQRMEQE++GRRED VKP KT+HH AG  AGK +KKV+P
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTVILVPASNIS 72
          GT+  + A++ S
Sbjct: 61 GTLFGLQATSNS 72

[Close]
BLAST of CmaCh07G005210 vs. NCBI nr
Match: gi|700193576|gb|KGN48780.1| (hypothetical protein Csa_6G500720 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 8.0e-18
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 1 

Query: 1  MSSMGASCARVYVMKKKVEEKLQRMEQEKAGRREDLVKPSKTAHH-AGAFAGKITKKVYP 60
          MSSMGASCARVYVMKKK EEKLQRMEQE++GRRED VKP KT+HH AG  AGK +KKV+P
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTVILVPASNIS 72
          GT+  + A++ S
Sbjct: 61 GTLFGLQATSNS 72

The following BLAST results are available for this feature:
BLAST of CmaCh07G005210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh07G005210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGB8_CUCSA5.5e-1872.22Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500720 PE=4 SV=1[more]
BLAST of CmaCh07G005210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh07G005210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193576|gb|KGN48780.1|8.0e-1872.22hypothetical protein Csa_6G500720 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G005210.1CmaCh07G005210.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 8..35
scor
NoneNo IPR availablePANTHERPTHR34950FAMILY NOT NAMEDcoord: 1..60
score: 3.7
NoneNo IPR availablePANTHERPTHR34950:SF2SUBFAMILY NOT NAMEDcoord: 1..60
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh07G005210Cucsa.104670Cucumber (Gy14) v1cgycmaB0235
CmaCh07G005210Cla014171Watermelon (97103) v1cmawmB826
CmaCh07G005210Csa6G500720Cucumber (Chinese Long) v2cmacuB877
CmaCh07G005210MELO3C007784Melon (DHL92) v3.5.1cmameB809
CmaCh07G005210ClCG01G019060Watermelon (Charleston Gray)cmawcgB754
CmaCh07G005210CSPI06G30510Wild cucumber (PI 183967)cmacpiB893
CmaCh07G005210CmoCh07G005160Cucurbita moschata (Rifu)cmacmoB875
CmaCh07G005210Lsi01G007330Bottle gourd (USVL1VR-Ls)cmalsiB786
CmaCh07G005210Cp4.1LG10g00980Cucurbita pepo (Zucchini)cmacpeB866
CmaCh07G005210Cp4.1LG19g09580Cucurbita pepo (Zucchini)cmacpeB880
CmaCh07G005210MELO3C007784.2Melon (DHL92) v3.6.1cmamedB907
CmaCh07G005210CsaV3_6G045740Cucumber (Chinese Long) v3cmacucB1035
CmaCh07G005210Cla97C01G018520Watermelon (97103) v2cmawmbB875
CmaCh07G005210Bhi03G000945Wax gourdcmawgoB1072
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh07G005210Silver-seed gourdcarcmaB0571
CmaCh07G005210Silver-seed gourdcarcmaB1056
CmaCh07G005210Silver-seed gourdcarcmaB1289
CmaCh07G005210Silver-seed gourdcarcmaB1415
CmaCh07G005210Cucurbita maxima (Rimu)cmacmaB523
CmaCh07G005210Cucurbita maxima (Rimu)cmacmaB546
CmaCh07G005210Cucurbita moschata (Rifu)cmacmoB858
CmaCh07G005210Melon (DHL92) v3.5.1cmameB796
CmaCh07G005210Cucurbita pepo (Zucchini)cmacpeB876
CmaCh07G005210Cucumber (Gy14) v2cgybcmaB861