Cp4.1LG10g00980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g00980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG10 : 3382630 .. 3382848 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCATGGGAGCTGCCTGCGCTAGGGTTTACGTAATGAGGAAGAAAACAGAGGAGAAACTGAAGAGGATGGAGCAGGAGAGAGCTGGCAGGTTAGAAGACACCGTCAAACCTCCAAAATCCGCCCATCACCACGGCGGCGGCATCGCCGGAAACGCCTGTAAGAAAGTCCATCCCGGTACCATATTCGCGGTTTCCGCGAACTCTAATTCCTGA

mRNA sequence

ATGTCCTCCATGGGAGCTGCCTGCGCTAGGGTTTACGTAATGAGGAAGAAAACAGAGGAGAAACTGAAGAGGATGGAGCAGGAGAGAGCTGGCAGGTTAGAAGACACCGTCAAACCTCCAAAATCCGCCCATCACCACGGCGGCGGCATCGCCGGAAACGCCTGTAAGAAAGTCCATCCCGGTACCATATTCGCGGTTTCCGCGAACTCTAATTCCTGA

Coding sequence (CDS)

ATGTCCTCCATGGGAGCTGCCTGCGCTAGGGTTTACGTAATGAGGAAGAAAACAGAGGAGAAACTGAAGAGGATGGAGCAGGAGAGAGCTGGCAGGTTAGAAGACACCGTCAAACCTCCAAAATCCGCCCATCACCACGGCGGCGGCATCGCCGGAAACGCCTGTAAGAAAGTCCATCCCGGTACCATATTCGCGGTTTCCGCGAACTCTAATTCCTGA

Protein sequence

MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHGGGIAGNACKKVHPGTIFAVSANSNS
Homology
[Close]
BLAST of Cp4.1LG10g00980 vs. TrEMBL
Match: A0A0A0KGB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500720 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.4e-22
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 1 

Query: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHGGGIAGNACKKVHP 60
          MSSMGA+CARVYVM+KK EEKL+RMEQER+GR ED+VKPPK++HH  GGIAG + KKVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTIFAVSANSNS 73
          GT+F + A SNS
Sbjct: 61 GTLFGLQATSNS 72

[Close]
BLAST of Cp4.1LG10g00980 vs. NCBI nr
Match: gi|700193576|gb|KGN48780.1| (hypothetical protein Csa_6G500720 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 1 

Query: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHGGGIAGNACKKVHP 60
          MSSMGA+CARVYVM+KK EEKL+RMEQER+GR ED+VKPPK++HH  GGIAG + KKVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTIFAVSANSNS 73
          GT+F + A SNS
Sbjct: 61 GTLFGLQATSNS 72

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g00980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g00980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGB8_CUCSA8.4e-2273.61Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500720 PE=4 SV=1[more]
BLAST of Cp4.1LG10g00980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g00980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193576|gb|KGN48780.1|1.2e-2173.61hypothetical protein Csa_6G500720 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g00980.1Cp4.1LG10g00980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 8..35
scor
NoneNo IPR availablePANTHERPTHR34950FAMILY NOT NAMEDcoord: 1..63
score: 1.9
NoneNo IPR availablePANTHERPTHR34950:SF2SUBFAMILY NOT NAMEDcoord: 1..63
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g00980Cucsa.104670Cucumber (Gy14) v1cgycpeB0211
Cp4.1LG10g00980CmaCh07G005210Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g00980CmoCh07G005160Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g00980Cla014171Watermelon (97103) v1cpewmB073
Cp4.1LG10g00980Csa6G500720Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g00980MELO3C007784Melon (DHL92) v3.5.1cpemeB060
Cp4.1LG10g00980ClCG01G019060Watermelon (Charleston Gray)cpewcgB061
Cp4.1LG10g00980CSPI06G30510Wild cucumber (PI 183967)cpecpiB080
Cp4.1LG10g00980Lsi01G007330Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g00980MELO3C007784.2Melon (DHL92) v3.6.1cpemedB080
Cp4.1LG10g00980CsaV3_6G045740Cucumber (Chinese Long) v3cpecucB0092
Cp4.1LG10g00980Bhi03G000945Wax gourdcpewgoB0084
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g00980Cp4.1LG19g09580Cucurbita pepo (Zucchini)cpecpeB076
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g00980Cucurbita pepo (Zucchini)cpecpeB065
Cp4.1LG10g00980Cucurbita pepo (Zucchini)cpecpeB073
Cp4.1LG10g00980Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g00980Cucurbita maxima (Rimu)cmacpeB702
Cp4.1LG10g00980Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g00980Cucurbita moschata (Rifu)cmocpeB655
Cp4.1LG10g00980Cucumber (Gy14) v2cgybcpeB710
Cp4.1LG10g00980Melon (DHL92) v3.6.1cpemedB079
Cp4.1LG10g00980Silver-seed gourdcarcpeB0554
Cp4.1LG10g00980Silver-seed gourdcarcpeB1064
Cp4.1LG10g00980Silver-seed gourdcarcpeB1300
Cp4.1LG10g00980Silver-seed gourdcarcpeB1413