Cla014171 (gene) Watermelon (97103) v1

Overview
NameCla014171
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 28810737 .. 28810952 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCATAGGAGCTAGCTGCGCTCGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTACAGAGGATGGAGCAGGAGAGATCCGGCAGGAGAGAAGACTCCGTCAAACCTCCTAAAACTGCCCATCACGGCGGCGCTGTCACCGGCAAATCCAGTAAAAAAGTCTATCCGGGCACCATATTTGGGGTTCCGGCGACCTCTAATTCTTGA

mRNA sequence

ATGTCCTCCATAGGAGCTAGCTGCGCTCGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTACAGAGGATGGAGCAGGAGAGATCCGGCAGGAGAGAAGACTCCGTCAAACCTCCTAAAACTGCCCATCACGGCGGCGCTGTCACCGGCAAATCCAGTAAAAAAGTCTATCCGGGCACCATATTTGGGGTTCCGGCGACCTCTAATTCTTGA

Coding sequence (CDS)

ATGTCCTCCATAGGAGCTAGCTGCGCTCGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTACAGAGGATGGAGCAGGAGAGATCCGGCAGGAGAGAAGACTCCGTCAAACCTCCTAAAACTGCCCATCACGGCGGCGCTGTCACCGGCAAATCCAGTAAAAAAGTCTATCCGGGCACCATATTTGGGGTTCCGGCGACCTCTAATTCTTGA

Protein sequence

MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHHGGAVTGKSSKKVYPGTIFGVPATSNS
Homology
[Close]
BLAST of Cla014171 vs. TrEMBL
Match: A0A0A0KGB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500720 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.5e-26
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 1 

Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHH-GGAVTGKSSKKVYP 60
          MSS+GASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKT+HH  G + GKSSKKV+P
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTIFGVPATSNS 72
          GT+FG+ ATSNS
Sbjct: 61 GTLFGLQATSNS 72

[Close]
BLAST of Cla014171 vs. NCBI nr
Match: gi|700193576|gb|KGN48780.1| (hypothetical protein Csa_6G500720 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 7.9e-26
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 1 

Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHH-GGAVTGKSSKKVYP 60
          MSS+GASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKT+HH  G + GKSSKKV+P
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTIFGVPATSNS 72
          GT+FG+ ATSNS
Sbjct: 61 GTLFGLQATSNS 72

The following BLAST results are available for this feature:
BLAST of Cla014171 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGB8_CUCSA5.5e-2684.72Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500720 PE=4 SV=1[more]
BLAST of Cla014171 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193576|gb|KGN48780.1|7.9e-2684.72hypothetical protein Csa_6G500720 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU30039watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU66007watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla014171Cla014171.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU30039WMU30039transcribed_cluster
WMU66007WMU66007transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 8..35
scor
NoneNo IPR availablePANTHERPTHR34950FAMILY NOT NAMEDcoord: 1..62
score: 7.0
NoneNo IPR availablePANTHERPTHR34950:SF2SUBFAMILY NOT NAMEDcoord: 1..62
score: 7.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla014171Cla97C01G018520Watermelon (97103) v2wmwmbB234
Cla014171Csa6G500720Cucumber (Chinese Long) v2cuwmB500
Cla014171MELO3C007784Melon (DHL92) v3.5.1mewmB570
Cla014171ClCG01G019060Watermelon (Charleston Gray)wcgwmB141
Cla014171CSPI06G30510Wild cucumber (PI 183967)cpiwmB519
Cla014171Cucsa.104670Cucumber (Gy14) v1cgywmB136
Cla014171CmaCh07G005210Cucurbita maxima (Rimu)cmawmB826
Cla014171CmoCh07G005160Cucurbita moschata (Rifu)cmowmB816
Cla014171Lsi01G007330Bottle gourd (USVL1VR-Ls)lsiwmB144
Cla014171Cp4.1LG10g00980Cucurbita pepo (Zucchini)cpewmB073
Cla014171Cp4.1LG19g09580Cucurbita pepo (Zucchini)cpewmB482
Cla014171MELO3C007784.2Melon (DHL92) v3.6.1medwmB559
Cla014171CsaV3_6G045740Cucumber (Chinese Long) v3cucwmB526
Cla014171Bhi03G000945Wax gourdwgowmB426
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla014171Watermelon (97103) v1wmwmB105
Cla014171Cucurbita maxima (Rimu)cmawmB323
Cla014171Cucurbita maxima (Rimu)cmawmB632
Cla014171Cucurbita maxima (Rimu)cmawmB715
Cla014171Cucurbita moschata (Rifu)cmowmB318
Cla014171Cucurbita moschata (Rifu)cmowmB623
Cla014171Cucurbita moschata (Rifu)cmowmB711
Cla014171Melon (DHL92) v3.5.1mewmB534
Cla014171Watermelon (Charleston Gray)wcgwmB385
Cla014171Cucumber (Chinese Long) v2cuwmB329
Cla014171Cucurbita pepo (Zucchini)cpewmB232
Cla014171Cucurbita pepo (Zucchini)cpewmB443
Cla014171Bottle gourd (USVL1VR-Ls)lsiwmB452
Cla014171Cucumber (Gy14) v2cgybwmB303
Cla014171Cucumber (Gy14) v2cgybwmB468
Cla014171Melon (DHL92) v3.6.1medwmB519
Cla014171Silver-seed gourdcarwmB0407
Cla014171Silver-seed gourdcarwmB0756
Cla014171Silver-seed gourdcarwmB0942
Cla014171Silver-seed gourdcarwmB1022
Cla014171Cucumber (Chinese Long) v3cucwmB341
Cla014171Watermelon (97103) v2wmwmbB279
Cla014171Wax gourdwgowmB230