CmoCh03G000240 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCCAAGTTCTCCTTCCCCTTGGTGATCCGACCCTAATTCGCTTTAGCCGCTGTATTTCTGTCAATTCTTTCCAATTTCTAGAGGTTTTTCTTCTCCCTTTTCCCAGGTGCGAATTAAAGCTATCTATTCCATGAACTCGATTTCCTTGCTTCTTGATTTTTTCATTCTCTGAACTGGGTTTCTTGATTTGAACTCGCGGTACTTCATTTCTCTTGATTTCCCGAGAAATTTCGTGTTCTGTTTCACTCTCTGTGATTGAAAATCTATTGCACATAAGATGTTTGATAAAATTCCCTTGAACCGATGCTCAGATTTTGCTTAGGAGGTTTTGGTTATTGAATGAGCTTATCGCGCCTCAATTTGCAGGACTTTCTGTGTTTTTCATATTTCCAAAGCTTCGTTTCATCTTCCGAGTAAACAGTTTTTATGTGTTTTTCCAGTGGAGGTGGAAGCGAACTAGTTGTGCAGAAAAAATGTTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGTTCTATTCTTTGTCTAATTTTTATGGCCTTTTTTTTTTATTATTAGTTTTAGATGCATTTTGATTATACTGCTATCAACCTATAACAGAGACTTCCCTTGTTAAATCTACTTTCAAAAATAGTTTTCATAGATTCTATATTGTATTCTGGTTGAAGTATGGCTTAAAATGGGCAAGAGGCTAAGGAACGAAACGAAAAGAGTAATCAAAGAGGAGAAGAAAGGTCATGAATCTGAATAATCAGGATGATAAAGAATATCTTGAAATGAAAGTTATGAGAACCTGATGGAGGGTCAAGATCCTTGGAACGTCCCTAGGTTTGAATAATCAAATACGTGACGGTCCTTGAAACGTTGCATCACGTATACCTTGAAACTAGATTATGAGAACCTGATGTACAGGACATAATCTAGGTTCTCAAGTATACGTGACAGTTCTTGGTCCTTGGAACGTCCCTAGGTTTGAATAATCAAATATGTGACAGTCCTTGGAACGTCACGCCACGTCATGTATACTTTGAAACTAGATTATGAGAACCTGATGTACATGACATAATCTAGGTTCTTAAGTATACGCACGTCACATATACTTTGAAACTGTATAGAAGAGCTACAAGATAACTCAAGTATTCGAGGTACTTGGAACGTTCCTAGATTTGAATATACACACTCGAGCCTAAACCATCTGAACAGTTCTCTACCTTCATCGTTTACCACTCACTGGATTTGTAACAAATCCCCCCAACAATTCACCCAAACAATATTAACTACTCCCGTGGGATTCTTATCAAAGAAGAGATCCCAAACGAATTGGCTTCTTCGAAAAAAACCTTGTTCGTTGGAAGATCTATCTCGTGCCTGGTACTGTATGGTTCCACTCTAGAAGAACTCCGAATCAATCTCTTGAAGCTCATCCTCTTAAAAGCCCCAAGGGCACCATATTCTAGGAGCTCAAACGATGTGATTGAATAAATCCTCCTTTATCTGTTGCAGGTCGAGGACTCCTTCTCCTTCCCCTTCTTCAAACTCCGATTCATATTGTTCAATCAGAGGGTCACAGAAGGAATGTGATCTTTGATTTATTACCCCAGGGAAGACATAACTAGGTCATAGGCAACATAGAGGAGCTCATAACCCACCACATGAACCCATCTTTCAAGCTTTACTGACTCGATGCTAATACCAACCAACAAAAATTTCGTCTTACTTTACCTATCAAGTTCTATTTAGGCCCACAAAGGACTCCATTAAGCATAAGGAAATAGTATTATAAACTGTAAATGAGTAAGATGGGTGATTTTTTCTCTCTCCCAACAAACATTCCTTCTGCTAACCTTTATCCATGCCTCTCAAAATAAGTCTGTTAAGCACATCCACGAGCACCCCAAAAGAGAATGATGCTTAGAATGATGCTTGATTTTACAAACGAGGAATACATCTCTATCGGTACAAGACCTTTTGGGAGAAACCAAAAGCAAAGCCGCAAAGCCGCGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGAAGAGTCGTGGTTCCTAACATTTGCATTACACGTTATTATTGTTCCATGGTCATGTATTATGATTTTGGGAAGCTAGAAGTACTTGAAACTTGAATGAAGTAGCACTTCTTTTTCTAAATGTTAAAAATATGTTTCTTGGTATGTATCTTTCTTGTCCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGTCCAAGATTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCAAAGAACCCCAAGTGAGTTACGCTTGCAGTTTAACCTCTGCCACATCCAGAATGACCTCTTCAATGTTTAGCCTCAATTTTGTATGAATCTCCTTCTAGGTTTCTTTTATATATATGACTCTTCTTGTACCTCATGCCTTATGCTTTGTTATACGTTTTATGCTTTGTTATACGTTTTATTTTATCAAGTTGTAACAACTCAAGTCCACTGCTAGCAAATATTGTCCTCTTTGGATTTTTCCTTCTGGGCATCCCTTCAAAGTTTTAAAATGTGTCTACTAGAAAGATGTTTCTAC CTCCAAGTTCTCCTTCCCCTTGGTGATCCGACCCTAATTCGCTTTAGCCGCTGTATTTCTGTCAATTCTTTCCAATTTCTAGAGGTTTTTCTTCTCCCTTTTCCCAGGACTTTCTGTGTTTTTCATATTTCCAAAGCTTCGTTTCATCTTCCGAGTAAACAGTTTTTATGTGTTTTTCCAGTGGAGGTGGAAGCGAACTAGTTGTGCAGAAAAAATGTTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGTCCAAGATTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCAAAGAACCCCAAGTGAGTTACGCTTGCAGTTTAACCTCTGCCACATCCAGAATGACCTCTTCAATGTTTAGCCTCAATTTTGTATGAATCTCCTTCTAGGTTTCTTTTATATATATGACTCTTCTTGTACCTCATGCCTTATGCTTTGTTATACGTTTTATGCTTTGTTATACGTTTTATTTTATCAAGTTGTAACAACTCAAGTCCACTGCTAGCAAATATTGTCCTCTTTGGATTTTTCCTTCTGGGCATCCCTTCAAAGTTTTAAAATGTGTCTACTAGAAAGATGTTTCTAC ATGTTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGTCCAAGATTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCAAAGAACCCCAAGTGA
BLAST of CmoCh03G000240 vs. Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07 Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1
BLAST of CmoCh03G000240 vs. Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 1.8e-07 Identity = 27/77 (35.06%), Postives = 48/77 (62.34%), Query Frame = 1
BLAST of CmoCh03G000240 vs. Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 4.4e-06 Identity = 27/90 (30.00%), Postives = 51/90 (56.67%), Query Frame = 1
BLAST of CmoCh03G000240 vs. TrEMBL
Match: A0A151SBL4_CAJCA (Upstream activation factor subunit UAF30 OS=Cajanus cajan GN=KK1_025905 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 8.3e-44 Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 1
BLAST of CmoCh03G000240 vs. TrEMBL
Match: A0A0A0L2E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 1.4e-43 Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 1
BLAST of CmoCh03G000240 vs. TrEMBL
Match: A0A0B2NVJ3_GLYSO (Upstream activation factor subunit spp27 OS=Glycine soja GN=glysoja_006364 PE=4 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 3.1e-43 Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1
BLAST of CmoCh03G000240 vs. TrEMBL
Match: C6T3J2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G321900 PE=2 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 3.1e-43 Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1
BLAST of CmoCh03G000240 vs. TrEMBL
Match: I1N0J4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G090500 PE=4 SV=1) HSP 1 Score: 180.3 bits (456), Expect = 1.2e-42 Identity = 89/100 (89.00%), Postives = 92/100 (92.00%), Query Frame = 1
BLAST of CmoCh03G000240 vs. TAIR10
Match: AT4G26810.1 (AT4G26810.1 SWIB/MDM2 domain superfamily protein) HSP 1 Score: 175.6 bits (444), Expect = 1.5e-44 Identity = 85/100 (85.00%), Postives = 90/100 (90.00%), Query Frame = 1
BLAST of CmoCh03G000240 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein) HSP 1 Score: 78.2 bits (191), Expect = 3.2e-15 Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = 1
BLAST of CmoCh03G000240 vs. TAIR10
Match: AT1G31760.1 (AT1G31760.1 SWIB/MDM2 domain superfamily protein) HSP 1 Score: 71.2 bits (173), Expect = 4.0e-13 Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1
BLAST of CmoCh03G000240 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein) HSP 1 Score: 65.5 bits (158), Expect = 2.2e-11 Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1
BLAST of CmoCh03G000240 vs. TAIR10
Match: AT3G03590.1 (AT3G03590.1 SWIB/MDM2 domain superfamily protein) HSP 1 Score: 64.7 bits (156), Expect = 3.7e-11 Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 1
BLAST of CmoCh03G000240 vs. NCBI nr
Match: gi|659096818|ref|XP_008449303.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis melo]) HSP 1 Score: 186.0 bits (471), Expect = 3.1e-44 Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 1
BLAST of CmoCh03G000240 vs. NCBI nr
Match: gi|1012340959|gb|KYP52168.1| (Upstream activation factor subunit UAF30 [Cajanus cajan]) HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43 Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 1
BLAST of CmoCh03G000240 vs. NCBI nr
Match: gi|778694879|ref|XP_011653889.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus]) HSP 1 Score: 183.3 bits (464), Expect = 2.0e-43 Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 1
BLAST of CmoCh03G000240 vs. NCBI nr
Match: gi|700199619|gb|KGN54777.1| (hypothetical protein Csa_4G493210 [Cucumis sativus]) HSP 1 Score: 183.3 bits (464), Expect = 2.0e-43 Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 1
BLAST of CmoCh03G000240 vs. NCBI nr
Match: gi|351724909|ref|NP_001236050.1| (uncharacterized protein LOC100527179 [Glycine max]) HSP 1 Score: 182.2 bits (461), Expect = 4.5e-43 Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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