CmaCh18G012320 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G012320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Protease inhibitor/seed storage/lipid transfer protein family protein
Location	Cma_Chr18 : 9687683 .. 9688094 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGAACCAAGTCTCATGGGGTGCAACAAGTTATATTGCTCTTGTTGGTGTCTGTTCTGCTGTGGCAATCACAGGCACAGGCGCAAAGCTGCTCAACTCAGCTCAGCAACCTTAATGGGTGTGCACCTTTTGTGCTGCCTGGTGCCAGTAACCCAAGCCCAGAGTGTTGTGCAGCGCTTGGAGCTGTGCAGCAGGATTGCCTGTGCAGCACCCTCAGAATTTCCTCCACTCTGCCTTCGCTTTGCCGCCTTCCACCTCTCTCTTGTGGTCAGTTCTCTTCGTTTTTCTAACCATTTTTACTTGAGAATGGACTGTAATGAATGAAGGGGTTTTCTTTGATTTGTGCTTCGTTTCAGGTACAAACTAGAGGAGAAGGCTGATGGGTATTACAAGAAATGAATAATGCTC

mRNA sequence

ATGGCAGGAACCAAGTCTCATGGGGTGCAACAAGTTATATTGCTCTTGTTGGTGTCTGTTCTGCTGTGGCAATCACAGGCACAGGCGCAAAGCTGCTCAACTCAGCTCAGCAACCTTAATGGGTGTGCACCTTTTGTGCTGCCTGGTGCCAGTAACCCAAGCCCAGAGTGTTGTGCAGCGCTTGGAGCTGTGCAGCAGGATTGCCTGTGCAGCACCCTCAGAATTTCCTCCACTCTGCCTTCGCTTTGCCGCCTTCCACCTCTCTCTTGTGGTACAAACTAGAGGAGAAGGCTGATGGGTATTACAAGAAATGAATAATGCTC

Coding sequence (CDS)

ATGGCAGGAACCAAGTCTCATGGGGTGCAACAAGTTATATTGCTCTTGTTGGTGTCTGTTCTGCTGTGGCAATCACAGGCACAGGCGCAAAGCTGCTCAACTCAGCTCAGCAACCTTAATGGGTGTGCACCTTTTGTGCTGCCTGGTGCCAGTAACCCAAGCCCAGAGTGTTGTGCAGCGCTTGGAGCTGTGCAGCAGGATTGCCTGTGCAGCACCCTCAGAATTTCCTCCACTCTGCCTTCGCTTTGCCGCCTTCCACCTCTCTCTTGTGGTACAAACTAG

Protein sequence

MAGTKSHGVQQVILLLLVSVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSPECCAALGAVQQDCLCSTLRISSTLPSLCRLPPLSCGTN

Homology

[Close]

BLAST of CmaCh18G012320 vs. Swiss-Prot
Match: MEN8_SILLA (Protein MEN-8 OS=Silene latifolia GN=MEN-8 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-17
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 13 ILLLLVSVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGA--SNPSPECCAALGAVQQDCLC 72
          ++ L + V L  S+AQA  C++QL NLN CAP+V+PGA  +NPS ECCAAL  V  DC+C
Sbjct: 19 LVALAILVQLKGSEAQAGGCASQLGNLNVCAPYVVPGAVNTNPSQECCAALSGVNHDCMC 78

Query: 73 STLRISSTLPSLCRLPPLSCG 92
          +TLR++S LPS C L  L+CG
Sbjct: 79 NTLRVASQLPSSCNLAALNCG 99

[Close]

BLAST of CmaCh18G012320 vs. Swiss-Prot
Match: FIL1_ANTMA (Stamen-specific protein FIL1 OS=Antirrhinum majus GN=FIL1 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-17
Identity = 45/88 (51.14%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 9  VQQVILLLLVSVLLWQSQ----AQAQSCSTQLSNLNGCAPFVLPGASN-PSPECCAALGA 68
          ++ ++ L++++VL+ QSQ    ++AQ+CS  L+NLN CAPFV+ GA+  PS +CC AL +
Sbjct: 4  MKSIVPLVMLTVLVAQSQLITQSEAQTCSASLANLNACAPFVVLGAATTPSSDCCTALQS 63

Query: 69 VQQDCLCSTLRISSTLPSLCRLPPLSCG 92
          V  +CLC+TLRI+S +P+ C LPPLSCG
Sbjct: 64 VDHECLCNTLRIASRVPAQCNLPPLSCG 91

[Close]

BLAST of CmaCh18G012320 vs. Swiss-Prot
Match: 108_SOLLC (Protein 108 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.5e-16
Identity = 39/85 (45.88%), Postives = 59/85 (69.41%), Query Frame = 1


Query: 13  ILLLLVSVLLWQSQA----QAQSCSTQLSNLNGCAPFVLPGASNPSPECCAALGAVQQDC 72
           +LLL++ V++ QSQ       QSC+  L+ LN CAPF++PG+   S ECC A+ ++  DC
Sbjct: 18  LLLLILLVIVLQSQVIECQPQQSCTASLTGLNVCAPFLVPGSPTASTECCNAVQSINHDC 77

Query: 73  LCSTLRISSTLPSLCRLPPLSCGTN 94
           +C+T+RI++ +P+ C LPPLSC  N
Sbjct: 78  MCNTMRIAAQIPAQCNLPPLSCSAN 102

[Close]

BLAST of CmaCh18G012320 vs. Swiss-Prot
Match: A9_BRANA (Tapetum-specific protein A9 OS=Brassica napus GN=A9 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.9e-13
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1


Query: 13 ILLLLVSVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSPE--CCAALGAVQQDCLC 72
          ++ L +S L      +AQ C   LSN+  CAP VLPGA NP+P   CC AL A  +DC+C
Sbjct: 13 VMFLAMSALETVPMVRAQQCLDNLSNMQVCAPLVLPGAVNPAPNSNCCIALQATNKDCIC 72

Query: 73 STLRISSTLPSLCRLPPLSCG 92
          + LR ++T  + C LP L CG
Sbjct: 73 NALRAATTFTTTCNLPSLDCG 93

[Close]

BLAST of CmaCh18G012320 vs. Swiss-Prot
Match: LIM3_LILLO (Protein LIM3 OS=Lilium longiflorum GN=LIM3 PE=3 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 5.9e-13
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 1


Query: 9  VQQVILLLLVSVLLWQSQ-AQAQSCSTQLSNLNGCAPFVLPGAS-NPSPECCAALGAVQQ 68
          V+ ++  +L+ VL  QS+   AQ+CS  +  L  C P+VLPG    PS +CC+A+ AV  
Sbjct: 4  VKFLVCSVLLVVLATQSEIGLAQNCSAAIGGLMSCGPYVLPGNQLTPSTQCCSAIQAVNH 63

Query: 69 DCLCSTLRISSTLPSLCRLPPLSCGT 93
           CLC T+ I S+LP  C LPP+SCGT
Sbjct: 64 GCLCETINIISSLPGHCSLPPVSCGT 89

[Close]

BLAST of CmaCh18G012320 vs. TrEMBL
Match: A0A0A0LBB5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180390 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.7e-33
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 1  MAGTKSHGVQQVILLLLVSVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSPECCAA 60
          MAG KS G QQV++L L++++L Q+QAQ Q CSTQLSNLN CAPFVLPGA+NPSPECC A
Sbjct: 1  MAGIKSLGQQQVVILSLLALILAQAQAQPQGCSTQLSNLNSCAPFVLPGATNPSPECCGA 60

Query: 61 LGAVQQDCLCSTLRISSTLPSLCRLPPLSCGTN 94
          LGAVQQDCLCSTLRI+STLPSLC+LP LSCG+N
Sbjct: 61 LGAVQQDCLCSTLRIASTLPSLCQLPTLSCGSN 93

[Close]

BLAST of CmaCh18G012320 vs. TrEMBL
Match: B9ID39_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s13570g PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-19
Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 1


Query: 1  MAGTKSHGVQQVILLLLVSVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSP--ECC 60
          MA  KS      +LLLL ++ +    A +Q C++QL+NLN CAPFV+PGA+N +P  ECC
Sbjct: 1  MAALKSLSSPVAVLLLLTALAVQTQLAHSQQCTSQLNNLNVCAPFVVPGAANTNPNAECC 60

Query: 61 AALGAVQQDCLCSTLRISSTLPSLCRLPPLSCG 92
           AL AVQ DCLCSTL+ISS LPS C LPPL+CG
Sbjct: 61 NALEAVQHDCLCSTLQISSRLPSQCNLPPLTCG 93

[Close]

BLAST of CmaCh18G012320 vs. TrEMBL
Match: B9I4C6_POPTR (Tapetum-specific protein A9 OS=Populus trichocarpa GN=POPTR_0012s13560g PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-19
Identity = 51/93 (54.84%), Postives = 69/93 (74.19%), Query Frame = 1


Query: 1  MAGTKSHGVQQVILLLLVSVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGA--SNPSPECC 60
          MA  KS      +LLLL+++ +    A +Q C++QL++LN CAPFV+PGA  +NPS +CC
Sbjct: 1  MASLKSLSSPAALLLLLIALAVQTQLAHSQICTSQLNSLNVCAPFVVPGAPNTNPSTDCC 60

Query: 61 AALGAVQQDCLCSTLRISSTLPSLCRLPPLSCG 92
           ALGAVQ DCLCSTL+I++ LPS C LPP++CG
Sbjct: 61 NALGAVQHDCLCSTLQIAARLPSQCNLPPITCG 93

[Close]

BLAST of CmaCh18G012320 vs. TrEMBL
Match: W9RWP6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015746 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-19
Identity = 53/98 (54.08%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 1  MAGTKSHGVQQVILLLLVSVLLWQSQAQAQS-----CSTQLSNLNGCAPFVLPGASNPSP 60
          MA  KS   Q  +L+LL++ L+ Q    A++     C+++L+NLN CAPFV+PGA+NP P
Sbjct: 1  MASPKSVCYQAGLLVLLITALVAQQSHTAEAQVSPQCTSRLNNLNSCAPFVVPGAANPQP 60

Query: 61 --ECCAALGAVQQDCLCSTLRISSTLPSLCRLPPLSCG 92
            +CCAAL AV  DC+C+TLRI+S LPSLC +PPLSCG
Sbjct: 61 SAQCCAALQAVDHDCVCNTLRIASRLPSLCNIPPLSCG 98

[Close]

BLAST of CmaCh18G012320 vs. TrEMBL
Match: A0A0D2RQG5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046900 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.3e-18
Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 1


Query: 10 QQVILLLLVSVLLWQSQ-AQAQSCSTQLSNLNGCAPFVLPGA--SNPSPECCAALGAVQQ 69
          Q   +L+L++V   Q+Q A+AQSC+ +L+NLN CAPFV+PGA  +NPSP+CCAAL +VQ 
Sbjct: 13 QAAAILVLLTVAAVQTQTAKAQSCTPELTNLNVCAPFVVPGATQTNPSPDCCAALQSVQH 72

Query: 70 DCLCSTLRISSTLPSLCRLPPLSCG 92
          DCLCSTL I+S LPS C LPPL+ G
Sbjct: 73 DCLCSTLSIASRLPSQCNLPPLTSG 97

[Close]

BLAST of CmaCh18G012320 vs. TAIR10
Match: AT5G62080.1 (AT5G62080.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 87.0 bits (214), Expect = 6.5e-18
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 1


Query: 1  MAGTKSHGVQQVILLLLVSVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSPECCAA 60
          MA  KS      +L L ++ +  ++  QAQ C   L+N+  CA  VLPG+  P+ ECCAA
Sbjct: 4  MASFKSFAAVLSVLFLAMTAI--ETVVQAQECGNDLANVQVCAAMVLPGSGRPNSECCAA 63

Query: 61 LGAVQQDCLCSTLRISSTLPSLCRLPPLSCGTN 94
          L +  +DCLC+ LR +++LPSLC LPP+ CG N
Sbjct: 64 LQSTNRDCLCNALRAATSLPSLCNLPPVDCGIN 94

[Close]

BLAST of CmaCh18G012320 vs. TAIR10
Match: AT5G52160.1 (AT5G52160.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-15
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 6  SHGVQQVILLLLVSVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGA--SNPSPECCAALGA 65
          S    +V +++ + +++  +    QSC+ QLS LN C  FV+PGA  +NPS ECC AL A
Sbjct: 9  SMSFMKVAMMVALVLVVAATVVDGQSCNAQLSTLNVCGEFVVPGADRTNPSAECCNALEA 68

Query: 66 VQQDCLCSTLRISSTLPSLCRLPPLSC 91
          V  +CLC+T RI+S LPS C +P LSC
Sbjct: 69 VPNECLCNTFRIASRLPSRCNIPTLSC 95

[Close]

BLAST of CmaCh18G012320 vs. TAIR10
Match: AT5G07230.1 (AT5G07230.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 9.7e-14
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 9  VQQVILLLLVSVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSPE--CCAALGAVQQ 68
          ++ +  +L+   L       AQ C  +LSN+  CAP +LPGA NP+    CCAAL A  +
Sbjct: 4  LKSLAAILVAMFLATGPTVLAQQCRDELSNVQVCAPLLLPGAVNPAANSNCCAALQATNK 63

Query: 69 DCLCSTLRISSTLPSLCRLPPLSCG 92
          DCLC+ LR ++TL SLC LP   CG
Sbjct: 64 DCLCNALRAATTLTSLCNLPSFDCG 88

[Close]

BLAST of CmaCh18G012320 vs. NCBI nr
Match: gi|449446055|ref|XP_004140787.1| (PREDICTED: protein MEN-8 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 6.7e-33
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 1  MAGTKSHGVQQVILLLLVSVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSPECCAA 60
          MAG KS G QQV++L L++++L Q+QAQ Q CSTQLSNLN CAPFVLPGA+NPSPECC A
Sbjct: 1  MAGIKSLGQQQVVILSLLALILAQAQAQPQGCSTQLSNLNSCAPFVLPGATNPSPECCGA 60

Query: 61 LGAVQQDCLCSTLRISSTLPSLCRLPPLSCGTN 94
          LGAVQQDCLCSTLRI+STLPSLC+LP LSCG+N
Sbjct: 61 LGAVQQDCLCSTLRIASTLPSLCQLPTLSCGSN 93

[Close]

BLAST of CmaCh18G012320 vs. NCBI nr
Match: gi|659077392|ref|XP_008439180.1| (PREDICTED: protein MEN-8-like [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-32
Identity = 72/93 (77.42%), Postives = 81/93 (87.10%), Query Frame = 1


Query: 1  MAGTKSHGVQQVILLLLVSVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSPECCAA 60
          MAG KS G QQV++L L++++L Q+QAQ Q CSTQLSNLN CAPFVLPGA NPSPECC A
Sbjct: 1  MAGVKSLGKQQVVILSLLALMLVQAQAQPQGCSTQLSNLNSCAPFVLPGAPNPSPECCGA 60

Query: 61 LGAVQQDCLCSTLRISSTLPSLCRLPPLSCGTN 94
          LGAVQQDCLCSTLRI+STLPSLC LP LSCG+N
Sbjct: 61 LGAVQQDCLCSTLRIASTLPSLCHLPTLSCGSN 93

[Close]

BLAST of CmaCh18G012320 vs. NCBI nr
Match: gi|224134715|ref|XP_002321889.1| (hypothetical protein POPTR_0015s13570g [Populus trichocarpa])

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 1


Query: 1  MAGTKSHGVQQVILLLLVSVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSP--ECC 60
          MA  KS      +LLLL ++ +    A +Q C++QL+NLN CAPFV+PGA+N +P  ECC
Sbjct: 1  MAALKSLSSPVAVLLLLTALAVQTQLAHSQQCTSQLNNLNVCAPFVVPGAANTNPNAECC 60

Query: 61 AALGAVQQDCLCSTLRISSTLPSLCRLPPLSCG 92
           AL AVQ DCLCSTL+ISS LPS C LPPL+CG
Sbjct: 61 NALEAVQHDCLCSTLQISSRLPSQCNLPPLTCG 93

[Close]

BLAST of CmaCh18G012320 vs. NCBI nr
Match: gi|703141028|ref|XP_010107405.1| (hypothetical protein L484_015746 [Morus notabilis])

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-19
Identity = 53/98 (54.08%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 1  MAGTKSHGVQQVILLLLVSVLLWQSQAQAQS-----CSTQLSNLNGCAPFVLPGASNPSP 60
          MA  KS   Q  +L+LL++ L+ Q    A++     C+++L+NLN CAPFV+PGA+NP P
Sbjct: 1  MASPKSVCYQAGLLVLLITALVAQQSHTAEAQVSPQCTSRLNNLNSCAPFVVPGAANPQP 60

Query: 61 --ECCAALGAVQQDCLCSTLRISSTLPSLCRLPPLSCG 92
            +CCAAL AV  DC+C+TLRI+S LPSLC +PPLSCG
Sbjct: 61 SAQCCAALQAVDHDCVCNTLRIASRLPSLCNIPPLSCG 98

[Close]

BLAST of CmaCh18G012320 vs. NCBI nr
Match: gi|224122428|ref|XP_002318831.1| (Tapetum-specific protein A9 precursor [Populus trichocarpa])

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-19
Identity = 51/93 (54.84%), Postives = 69/93 (74.19%), Query Frame = 1


Query: 1  MAGTKSHGVQQVILLLLVSVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGA--SNPSPECC 60
          MA  KS      +LLLL+++ +    A +Q C++QL++LN CAPFV+PGA  +NPS +CC
Sbjct: 1  MASLKSLSSPAALLLLLIALAVQTQLAHSQICTSQLNSLNVCAPFVVPGAPNTNPSTDCC 60

Query: 61 AALGAVQQDCLCSTLRISSTLPSLCRLPPLSCG 92
           ALGAVQ DCLCSTL+I++ LPS C LPP++CG
Sbjct: 61 NALGAVQHDCLCSTLQIAARLPSQCNLPPITCG 93

The following BLAST results are available for this feature:

BLAST of CmaCh18G012320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MEN8_SILLA	1.0e-17	55.56	Protein MEN-8 OS=Silene latifolia GN=MEN-8 PE=3 SV=1	[more]
FIL1_ANTMA	1.0e-17	51.14	Stamen-specific protein FIL1 OS=Antirrhinum majus GN=FIL1 PE=2 SV=1	[more]
108_SOLLC	7.5e-16	45.88	Protein 108 OS=Solanum lycopersicum PE=2 SV=1	[more]
A9_BRANA	5.9e-13	45.68	Tapetum-specific protein A9 OS=Brassica napus GN=A9 PE=2 SV=1	[more]
LIM3_LILLO	5.9e-13	46.51	Protein LIM3 OS=Lilium longiflorum GN=LIM3 PE=3 SV=2	[more]

BLAST of CmaCh18G012320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBB5_CUCSA	4.7e-33	77.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180390 PE=4 SV=1	[more]
B9ID39_POPTR	1.0e-19	58.06	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s13570g PE=4 SV=1	[more]
B9I4C6_POPTR	2.9e-19	54.84	Tapetum-specific protein A9 OS=Populus trichocarpa GN=POPTR_0012s13560g PE=4 SV=...	[more]
W9RWP6_9ROSA	2.9e-19	54.08	Uncharacterized protein OS=Morus notabilis GN=L484_015746 PE=4 SV=1	[more]
A0A0D2RQG5_GOSRA	4.3e-18	61.18	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046900 PE=4 SV=1	[more]

BLAST of CmaCh18G012320 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62080.1	6.5e-18	45.16	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G52160.1	1.0e-15	47.13	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G07230.1	9.7e-14	44.71	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of CmaCh18G012320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446055\|ref\|XP_004140787.1\|	6.7e-33	77.42	PREDICTED: protein MEN-8 [Cucumis sativus]	[more]
gi\|659077392\|ref\|XP_008439180.1\|	1.1e-32	77.42	PREDICTED: protein MEN-8-like [Cucumis melo]	[more]
gi\|224134715\|ref\|XP_002321889.1\|	1.5e-19	58.06	hypothetical protein POPTR_0015s13570g [Populus trichocarpa]	[more]
gi\|703141028\|ref\|XP_010107405.1\|	4.2e-19	54.08	hypothetical protein L484_015746 [Morus notabilis]	[more]
gi\|224122428\|ref\|XP_002318831.1\|	4.2e-19	54.84	Tapetum-specific protein A9 precursor [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G012320.1	CmaCh18G012320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 16..74 score: 2.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 32..90 score: 8.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 29..91 score: 1.57
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 36..74 score: 4.
None	No IPR available	PANTHER	PTHR35501	FAMILY NOT NAMED	coord: 12..93 score: 2.0
None	No IPR available	PANTHER	PTHR35501:SF2	PROTEASE INHIBITOR/SEED STORAGE/LIPID TRANSFER PROTEIN (LTP) FAMILY PROTEIN-RELATED	coord: 12..93 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G012320	Cucsa.250910	Cucumber (Gy14) v1	cgycmaB0716
CmaCh18G012320	Cla006201	Watermelon (97103) v1	cmawmB373
CmaCh18G012320	Csa3G180390	Cucumber (Chinese Long) v2	cmacuB408
CmaCh18G012320	MELO3C006883	Melon (DHL92) v3.5.1	cmameB375
CmaCh18G012320	CSPI03G16700	Wild cucumber (PI 183967)	cmacpiB413
CmaCh18G012320	CmoCh18G012550	Cucurbita moschata (Rifu)	cmacmoB406
CmaCh18G012320	Lsi05G012540	Bottle gourd (USVL1VR-Ls)	cmalsiB387
CmaCh18G012320	Cp4.1LG09g00990	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G012320	MELO3C006883.2	Melon (DHL92) v3.6.1	cmamedB432
CmaCh18G012320	CsaV3_3G016880	Cucumber (Chinese Long) v3	cmacucB0487
CmaCh18G012320	Cla97C05G089860	Watermelon (97103) v2	cmawmbB424
CmaCh18G012320	Bhi01G000987	Wax gourd	cmawgoB0507
CmaCh18G012320	Carg22084	Silver-seed gourd	carcmaB1032

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G012320	Cucumber (Gy14) v2	cgybcmaB352
CmaCh18G012320	Cucumber (Gy14) v2	cgybcmaB630
CmaCh18G012320	Melon (DHL92) v3.6.1	cmamedB407
CmaCh18G012320	Melon (DHL92) v3.6.1	cmamedB435
CmaCh18G012320	Silver-seed gourd	carcmaB0996
CmaCh18G012320	Cucumber (Chinese Long) v3	cmacucB0502
CmaCh18G012320	Watermelon (97103) v2	cmawmbB403
CmaCh18G012320	Watermelon (97103) v2	cmawmbB429
CmaCh18G012320	Wax gourd	cmawgoB0509
CmaCh18G012320	Cucurbita maxima (Rimu)	cmacmaB253
CmaCh18G012320	Cucurbita maxima (Rimu)	cmacmaB338
CmaCh18G012320	Cucurbita maxima (Rimu)	cmacmaB396
CmaCh18G012320	Cucurbita moschata (Rifu)	cmacmoB405
CmaCh18G012320	Cucurbita moschata (Rifu)	cmacmoB416
CmaCh18G012320	Cucumber (Chinese Long) v2	cmacuB420
CmaCh18G012320	Watermelon (Charleston Gray)	cmawcgB352
CmaCh18G012320	Watermelon (Charleston Gray)	cmawcgB365
CmaCh18G012320	Cucurbita pepo (Zucchini)	cmacpeB425
CmaCh18G012320	Cucurbita pepo (Zucchini)	cmacpeB453
CmaCh18G012320	Bottle gourd (USVL1VR-Ls)	cmalsiB365
CmaCh18G012320	Bottle gourd (USVL1VR-Ls)	cmalsiB386