CmoCh18G012550 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G012550
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Protease inhibitor/seed storage/lipid transfer protein family protein
Location	Cmo_Chr18 : 12303951 .. 12304321 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGAATCAAGTCTCATGGGGTGCAGCAAGTTATATTGCTCTTGTTGGTGACTGTTCTGCTGTGGCAATCACAGGCACAGGCGCAAAGCTGCTCAACTCAGCTCAGCAACCTTAATGGGTGTGCACCTTTTGTGCTTCCTGGTGCCAGTAACCCAAGCCCAGAGTGCTGTGCAGCGCTTGGAGCTGTGCAGCAGGATTGCCTGTGCAGCACCCTCAGAATTTCCTCCACTCTGCCTTCGCTTTGCCGCCTTCCACCTCTCTCTTGTGGTCAGTTCTCCTCGTTTTTCTAACCATTTTTACTTGAGAATGGACTGTAATGAATGAAGGGGTTTTCTTTGATTTGTGCTTCGTTTCAGGTACAAACTAG

mRNA sequence

ATGGCAGGAATCAAGTCTCATGGGGTGCAGCAAGTTATATTGCTCTTGTTGGTGACTGTTCTGCTGTGGCAATCACAGGCACAGGCGCAAAGCTGCTCAACTCAGCTCAGCAACCTTAATGGGTGTGCACCTTTTGTGCTTCCTGGTGCCAGTAACCCAAGCCCAGAGTGCTGTGCAGCGCTTGGAGCTGTGCAGCAGGATTGCCTGTGCAGCACCCTCAGAATTTCCTCCACTCTGCCTTCGCTTTGCCGCCTTCCACCTCTCTCTTGTGGTACAAACTAG

Coding sequence (CDS)

ATGGCAGGAATCAAGTCTCATGGGGTGCAGCAAGTTATATTGCTCTTGTTGGTGACTGTTCTGCTGTGGCAATCACAGGCACAGGCGCAAAGCTGCTCAACTCAGCTCAGCAACCTTAATGGGTGTGCACCTTTTGTGCTTCCTGGTGCCAGTAACCCAAGCCCAGAGTGCTGTGCAGCGCTTGGAGCTGTGCAGCAGGATTGCCTGTGCAGCACCCTCAGAATTTCCTCCACTCTGCCTTCGCTTTGCCGCCTTCCACCTCTCTCTTGTGGTACAAACTAG

Homology

[Close]

BLAST of CmoCh18G012550 vs. Swiss-Prot
Match: FIL1_ANTMA (Stamen-specific protein FIL1 OS=Antirrhinum majus GN=FIL1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-18
Identity = 50/96 (52.08%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 1  MAGIKSHGVQQVILLLLVTVLLWQSQ----AQAQSCSTQLSNLNGCAPFVLPGASN-PSP 60
          MA +KS     ++ L+++TVL+ QSQ    ++AQ+CS  L+NLN CAPFV+ GA+  PS 
Sbjct: 1  MAAMKS-----IVPLVMLTVLVAQSQLITQSEAQTCSASLANLNACAPFVVLGAATTPSS 60

Query: 61 ECCAALGAVQQDCLCSTLRISSTLPSLCRLPPLSCG 92
          +CC AL +V  +CLC+TLRI+S +P+ C LPPLSCG
Sbjct: 61 DCCTALQSVDHECLCNTLRIASRVPAQCNLPPLSCG 91

[Close]

BLAST of CmoCh18G012550 vs. Swiss-Prot
Match: MEN8_SILLA (Protein MEN-8 OS=Silene latifolia GN=MEN-8 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.0e-18
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 13 ILLLLVTVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGA--SNPSPECCAALGAVQQDCLC 72
          ++ L + V L  S+AQA  C++QL NLN CAP+V+PGA  +NPS ECCAAL  V  DC+C
Sbjct: 19 LVALAILVQLKGSEAQAGGCASQLGNLNVCAPYVVPGAVNTNPSQECCAALSGVNHDCMC 78

Query: 73 STLRISSTLPSLCRLPPLSCG 92
          +TLR++S LPS C L  L+CG
Sbjct: 79 NTLRVASQLPSSCNLAALNCG 99

[Close]

BLAST of CmoCh18G012550 vs. Swiss-Prot
Match: 108_SOLLC (Protein 108 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.7e-16
Identity = 39/85 (45.88%), Postives = 59/85 (69.41%), Query Frame = 1


Query: 13  ILLLLVTVLLWQSQA----QAQSCSTQLSNLNGCAPFVLPGASNPSPECCAALGAVQQDC 72
           +LLL++ V++ QSQ       QSC+  L+ LN CAPF++PG+   S ECC A+ ++  DC
Sbjct: 18  LLLLILLVIVLQSQVIECQPQQSCTASLTGLNVCAPFLVPGSPTASTECCNAVQSINHDC 77

Query: 73  LCSTLRISSTLPSLCRLPPLSCGTN 94
           +C+T+RI++ +P+ C LPPLSC  N
Sbjct: 78  MCNTMRIAAQIPAQCNLPPLSCSAN 102

[Close]

BLAST of CmoCh18G012550 vs. Swiss-Prot
Match: LIM3_LILLO (Protein LIM3 OS=Lilium longiflorum GN=LIM3 PE=3 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 4.5e-13
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 1


Query: 9  VQQVILLLLVTVLLWQSQ-AQAQSCSTQLSNLNGCAPFVLPGAS-NPSPECCAALGAVQQ 68
          V+ ++  +L+ VL  QS+   AQ+CS  +  L  C P+VLPG    PS +CC+A+ AV  
Sbjct: 4  VKFLVCSVLLVVLATQSEIGLAQNCSAAIGGLMSCGPYVLPGNQLTPSTQCCSAIQAVNH 63

Query: 69 DCLCSTLRISSTLPSLCRLPPLSCGT 93
           CLC T+ I S+LP  C LPP+SCGT
Sbjct: 64 GCLCETINIISSLPGHCSLPPVSCGT 89

[Close]

BLAST of CmoCh18G012550 vs. Swiss-Prot
Match: A9_BRANA (Tapetum-specific protein A9 OS=Brassica napus GN=A9 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.9e-13
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1


Query: 1  MAGIKSHGVQQVILLLLVTVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSPE--CC 60
          M  +KS      ++ L ++ L      +AQ C   LSN+  CAP VLPGA NP+P   CC
Sbjct: 1  MEFLKSFTTILFVMFLAMSALETVPMVRAQQCLDNLSNMQVCAPLVLPGAVNPAPNSNCC 60

Query: 61 AALGAVQQDCLCSTLRISSTLPSLCRLPPLSCG 92
           AL A  +DC+C+ LR ++T  + C LP L CG
Sbjct: 61 IALQATNKDCICNALRAATTFTTTCNLPSLDCG 93

[Close]

BLAST of CmoCh18G012550 vs. TrEMBL
Match: A0A0A0LBB5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180390 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.1e-33
Identity = 73/93 (78.49%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 1  MAGIKSHGVQQVILLLLVTVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSPECCAA 60
          MAGIKS G QQV++L L+ ++L Q+QAQ Q CSTQLSNLN CAPFVLPGA+NPSPECC A
Sbjct: 1  MAGIKSLGQQQVVILSLLALILAQAQAQPQGCSTQLSNLNSCAPFVLPGATNPSPECCGA 60

Query: 61 LGAVQQDCLCSTLRISSTLPSLCRLPPLSCGTN 94
          LGAVQQDCLCSTLRI+STLPSLC+LP LSCG+N
Sbjct: 61 LGAVQQDCLCSTLRIASTLPSLCQLPTLSCGSN 93

[Close]

BLAST of CmoCh18G012550 vs. TrEMBL
Match: B9ID39_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s13570g PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.8e-20
Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 1


Query: 1  MAGIKSHGVQQVILLLLVTVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSP--ECC 60
          MA +KS      +LLLL  + +    A +Q C++QL+NLN CAPFV+PGA+N +P  ECC
Sbjct: 1  MAALKSLSSPVAVLLLLTALAVQTQLAHSQQCTSQLNNLNVCAPFVVPGAANTNPNAECC 60

Query: 61 AALGAVQQDCLCSTLRISSTLPSLCRLPPLSCG 92
           AL AVQ DCLCSTL+ISS LPS C LPPL+CG
Sbjct: 61 NALEAVQHDCLCSTLQISSRLPSQCNLPPLTCG 93

[Close]

BLAST of CmoCh18G012550 vs. TrEMBL
Match: B9I4C6_POPTR (Tapetum-specific protein A9 OS=Populus trichocarpa GN=POPTR_0012s13560g PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-19
Identity = 51/93 (54.84%), Postives = 69/93 (74.19%), Query Frame = 1


Query: 1  MAGIKSHGVQQVILLLLVTVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGA--SNPSPECC 60
          MA +KS      +LLLL+ + +    A +Q C++QL++LN CAPFV+PGA  +NPS +CC
Sbjct: 1  MASLKSLSSPAALLLLLIALAVQTQLAHSQICTSQLNSLNVCAPFVVPGAPNTNPSTDCC 60

Query: 61 AALGAVQQDCLCSTLRISSTLPSLCRLPPLSCG 92
           ALGAVQ DCLCSTL+I++ LPS C LPP++CG
Sbjct: 61 NALGAVQHDCLCSTLQIAARLPSQCNLPPITCG 93

[Close]

BLAST of CmoCh18G012550 vs. TrEMBL
Match: W9RWP6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015746 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-19
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 1  MAGIKSHGVQQVILLLLVTVLLWQSQAQAQS-----CSTQLSNLNGCAPFVLPGASNPSP 60
          MA  KS   Q  +L+LL+T L+ Q    A++     C+++L+NLN CAPFV+PGA+NP P
Sbjct: 1  MASPKSVCYQAGLLVLLITALVAQQSHTAEAQVSPQCTSRLNNLNSCAPFVVPGAANPQP 60

Query: 61 --ECCAALGAVQQDCLCSTLRISSTLPSLCRLPPLSCG 92
            +CCAAL AV  DC+C+TLRI+S LPSLC +PPLSCG
Sbjct: 61 SAQCCAALQAVDHDCVCNTLRIASRLPSLCNIPPLSCG 98

[Close]

BLAST of CmoCh18G012550 vs. TrEMBL
Match: A0A0D2RQG5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046900 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.6e-19
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 1


Query: 4  IKSHGVQQVILLLLVTVLLWQSQ-AQAQSCSTQLSNLNGCAPFVLPGA--SNPSPECCAA 63
          + S   Q   +L+L+TV   Q+Q A+AQSC+ +L+NLN CAPFV+PGA  +NPSP+CCAA
Sbjct: 7  VASLSSQAAAILVLLTVAAVQTQTAKAQSCTPELTNLNVCAPFVVPGATQTNPSPDCCAA 66

Query: 64 LGAVQQDCLCSTLRISSTLPSLCRLPPLSCG 92
          L +VQ DCLCSTL I+S LPS C LPPL+ G
Sbjct: 67 LQSVQHDCLCSTLSIASRLPSQCNLPPLTSG 97

[Close]

BLAST of CmoCh18G012550 vs. TAIR10
Match: AT5G62080.1 (AT5G62080.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 88.6 bits (218), Expect = 2.2e-18
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 1


Query: 1  MAGIKSHGVQQVILLLLVTVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSPECCAA 60
          MA  KS      +L L +T +  ++  QAQ C   L+N+  CA  VLPG+  P+ ECCAA
Sbjct: 4  MASFKSFAAVLSVLFLAMTAI--ETVVQAQECGNDLANVQVCAAMVLPGSGRPNSECCAA 63

Query: 61 LGAVQQDCLCSTLRISSTLPSLCRLPPLSCGTN 94
          L +  +DCLC+ LR +++LPSLC LPP+ CG N
Sbjct: 64 LQSTNRDCLCNALRAATSLPSLCNLPPVDCGIN 94

[Close]

BLAST of CmoCh18G012550 vs. TAIR10
Match: AT5G52160.1 (AT5G52160.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 80.1 bits (196), Expect = 7.9e-16
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 6  SHGVQQVILLLLVTVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGA--SNPSPECCAALGA 65
          S    +V +++ + +++  +    QSC+ QLS LN C  FV+PGA  +NPS ECC AL A
Sbjct: 9  SMSFMKVAMMVALVLVVAATVVDGQSCNAQLSTLNVCGEFVVPGADRTNPSAECCNALEA 68

Query: 66 VQQDCLCSTLRISSTLPSLCRLPPLSC 91
          V  +CLC+T RI+S LPS C +P LSC
Sbjct: 69 VPNECLCNTFRIASRLPSRCNIPTLSC 95

[Close]

BLAST of CmoCh18G012550 vs. TAIR10
Match: AT5G07230.1 (AT5G07230.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-13
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 9  VQQVILLLLVTVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSPE--CCAALGAVQQ 68
          ++ +  +L+   L       AQ C  +LSN+  CAP +LPGA NP+    CCAAL A  +
Sbjct: 4  LKSLAAILVAMFLATGPTVLAQQCRDELSNVQVCAPLLLPGAVNPAANSNCCAALQATNK 63

Query: 69 DCLCSTLRISSTLPSLCRLPPLSCG 92
          DCLC+ LR ++TL SLC LP   CG
Sbjct: 64 DCLCNALRAATTLTSLCNLPSFDCG 88

[Close]

BLAST of CmoCh18G012550 vs. NCBI nr
Match: gi|449446055|ref|XP_004140787.1| (PREDICTED: protein MEN-8 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-33
Identity = 73/93 (78.49%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 1  MAGIKSHGVQQVILLLLVTVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSPECCAA 60
          MAGIKS G QQV++L L+ ++L Q+QAQ Q CSTQLSNLN CAPFVLPGA+NPSPECC A
Sbjct: 1  MAGIKSLGQQQVVILSLLALILAQAQAQPQGCSTQLSNLNSCAPFVLPGATNPSPECCGA 60

Query: 61 LGAVQQDCLCSTLRISSTLPSLCRLPPLSCGTN 94
          LGAVQQDCLCSTLRI+STLPSLC+LP LSCG+N
Sbjct: 61 LGAVQQDCLCSTLRIASTLPSLCQLPTLSCGSN 93

[Close]

BLAST of CmoCh18G012550 vs. NCBI nr
Match: gi|659077392|ref|XP_008439180.1| (PREDICTED: protein MEN-8-like [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 8.8e-33
Identity = 72/93 (77.42%), Postives = 81/93 (87.10%), Query Frame = 1


Query: 1  MAGIKSHGVQQVILLLLVTVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSPECCAA 60
          MAG+KS G QQV++L L+ ++L Q+QAQ Q CSTQLSNLN CAPFVLPGA NPSPECC A
Sbjct: 1  MAGVKSLGKQQVVILSLLALMLVQAQAQPQGCSTQLSNLNSCAPFVLPGAPNPSPECCGA 60

Query: 61 LGAVQQDCLCSTLRISSTLPSLCRLPPLSCGTN 94
          LGAVQQDCLCSTLRI+STLPSLC LP LSCG+N
Sbjct: 61 LGAVQQDCLCSTLRIASTLPSLCHLPTLSCGSN 93

[Close]

BLAST of CmoCh18G012550 vs. NCBI nr
Match: gi|224134715|ref|XP_002321889.1| (hypothetical protein POPTR_0015s13570g [Populus trichocarpa])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 1


Query: 1  MAGIKSHGVQQVILLLLVTVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSP--ECC 60
          MA +KS      +LLLL  + +    A +Q C++QL+NLN CAPFV+PGA+N +P  ECC
Sbjct: 1  MAALKSLSSPVAVLLLLTALAVQTQLAHSQQCTSQLNNLNVCAPFVVPGAANTNPNAECC 60

Query: 61 AALGAVQQDCLCSTLRISSTLPSLCRLPPLSCG 92
           AL AVQ DCLCSTL+ISS LPS C LPPL+CG
Sbjct: 61 NALEAVQHDCLCSTLQISSRLPSQCNLPPLTCG 93

[Close]

BLAST of CmoCh18G012550 vs. NCBI nr
Match: gi|703141028|ref|XP_010107405.1| (hypothetical protein L484_015746 [Morus notabilis])

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-19
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 1  MAGIKSHGVQQVILLLLVTVLLWQSQAQAQS-----CSTQLSNLNGCAPFVLPGASNPSP 60
          MA  KS   Q  +L+LL+T L+ Q    A++     C+++L+NLN CAPFV+PGA+NP P
Sbjct: 1  MASPKSVCYQAGLLVLLITALVAQQSHTAEAQVSPQCTSRLNNLNSCAPFVVPGAANPQP 60

Query: 61 --ECCAALGAVQQDCLCSTLRISSTLPSLCRLPPLSCG 92
            +CCAAL AV  DC+C+TLRI+S LPSLC +PPLSCG
Sbjct: 61 SAQCCAALQAVDHDCVCNTLRIASRLPSLCNIPPLSCG 98

[Close]

BLAST of CmoCh18G012550 vs. NCBI nr
Match: gi|224122428|ref|XP_002318831.1| (Tapetum-specific protein A9 precursor [Populus trichocarpa])

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-19
Identity = 51/93 (54.84%), Postives = 69/93 (74.19%), Query Frame = 1


Query: 1  MAGIKSHGVQQVILLLLVTVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGA--SNPSPECC 60
          MA +KS      +LLLL+ + +    A +Q C++QL++LN CAPFV+PGA  +NPS +CC
Sbjct: 1  MASLKSLSSPAALLLLLIALAVQTQLAHSQICTSQLNSLNVCAPFVVPGAPNTNPSTDCC 60

Query: 61 AALGAVQQDCLCSTLRISSTLPSLCRLPPLSCG 92
           ALGAVQ DCLCSTL+I++ LPS C LPP++CG
Sbjct: 61 NALGAVQHDCLCSTLQIAARLPSQCNLPPITCG 93

The following BLAST results are available for this feature:

BLAST of CmoCh18G012550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FIL1_ANTMA	2.1e-18	52.08	Stamen-specific protein FIL1 OS=Antirrhinum majus GN=FIL1 PE=2 SV=1	[more]
MEN8_SILLA	8.0e-18	55.56	Protein MEN-8 OS=Silene latifolia GN=MEN-8 PE=3 SV=1	[more]
108_SOLLC	5.7e-16	45.88	Protein 108 OS=Solanum lycopersicum PE=2 SV=1	[more]
LIM3_LILLO	4.5e-13	46.51	Protein LIM3 OS=Lilium longiflorum GN=LIM3 PE=3 SV=2	[more]
A9_BRANA	5.9e-13	41.94	Tapetum-specific protein A9 OS=Brassica napus GN=A9 PE=2 SV=1	[more]

BLAST of CmoCh18G012550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBB5_CUCSA	2.1e-33	78.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180390 PE=4 SV=1	[more]
B9ID39_POPTR	7.8e-20	58.06	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s13570g PE=4 SV=1	[more]
B9I4C6_POPTR	2.3e-19	54.84	Tapetum-specific protein A9 OS=Populus trichocarpa GN=POPTR_0012s13560g PE=4 SV=...	[more]
W9RWP6_9ROSA	2.3e-19	55.10	Uncharacterized protein OS=Morus notabilis GN=L484_015746 PE=4 SV=1	[more]
A0A0D2RQG5_GOSRA	8.6e-19	59.34	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046900 PE=4 SV=1	[more]

BLAST of CmoCh18G012550 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62080.1	2.2e-18	46.24	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G52160.1	7.9e-16	47.13	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G07230.1	1.3e-13	44.71	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of CmoCh18G012550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446055\|ref\|XP_004140787.1\|	3.0e-33	78.49	PREDICTED: protein MEN-8 [Cucumis sativus]	[more]
gi\|659077392\|ref\|XP_008439180.1\|	8.8e-33	77.42	PREDICTED: protein MEN-8-like [Cucumis melo]	[more]
gi\|224134715\|ref\|XP_002321889.1\|	1.1e-19	58.06	hypothetical protein POPTR_0015s13570g [Populus trichocarpa]	[more]
gi\|703141028\|ref\|XP_010107405.1\|	3.2e-19	55.10	hypothetical protein L484_015746 [Morus notabilis]	[more]
gi\|224122428\|ref\|XP_002318831.1\|	3.2e-19	54.84	Tapetum-specific protein A9 precursor [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G012550.1	CmoCh18G012550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 16..74 score: 2.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 32..90 score: 8.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 16..91 score: 9.16
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 36..74 score: 4.
None	No IPR available	PANTHER	PTHR35501	FAMILY NOT NAMED	coord: 2..93 score: 1.7
None	No IPR available	PANTHER	PTHR35501:SF2	PROTEASE INHIBITOR/SEED STORAGE/LIPID TRANSFER PROTEIN (LTP) FAMILY PROTEIN-RELATED	coord: 2..93 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G012550	Cucsa.250910	Cucumber (Gy14) v1	cgycmoB0709
CmoCh18G012550	CmaCh18G012320	Cucurbita maxima (Rimu)	cmacmoB406
CmoCh18G012550	Cla006201	Watermelon (97103) v1	cmowmB366
CmoCh18G012550	Csa3G180390	Cucumber (Chinese Long) v2	cmocuB398
CmoCh18G012550	MELO3C006883	Melon (DHL92) v3.5.1	cmomeB368
CmoCh18G012550	CSPI03G16700	Wild cucumber (PI 183967)	cmocpiB401
CmoCh18G012550	Lsi05G012540	Bottle gourd (USVL1VR-Ls)	cmolsiB372
CmoCh18G012550	Cp4.1LG09g00990	Cucurbita pepo (Zucchini)	cmocpeB376
CmoCh18G012550	MELO3C006883.2	Melon (DHL92) v3.6.1	cmomedB421
CmoCh18G012550	CsaV3_3G016880	Cucumber (Chinese Long) v3	cmocucB0476
CmoCh18G012550	Cla97C05G089860	Watermelon (97103) v2	cmowmbB404
CmoCh18G012550	Bhi01G000987	Wax gourd	cmowgoB0506
CmoCh18G012550	Carg22084	Silver-seed gourd	carcmoB1003

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G012550	Cucumber (Gy14) v2	cgybcmoB324
CmoCh18G012550	Cucumber (Gy14) v2	cgybcmoB606
CmoCh18G012550	Melon (DHL92) v3.6.1	cmomedB392
CmoCh18G012550	Melon (DHL92) v3.6.1	cmomedB424
CmoCh18G012550	Silver-seed gourd	carcmoB0968
CmoCh18G012550	Silver-seed gourd	carcmoB1234
CmoCh18G012550	Silver-seed gourd	carcmoB1253
CmoCh18G012550	Cucumber (Chinese Long) v3	cmocucB0491
CmoCh18G012550	Watermelon (97103) v2	cmowmbB387
CmoCh18G012550	Watermelon (97103) v2	cmowmbB410
CmoCh18G012550	Wax gourd	cmowgoB0500
CmoCh18G012550	Wax gourd	cmowgoB0508
CmoCh18G012550	Cucurbita moschata (Rifu)	cmocmoB201
CmoCh18G012550	Cucurbita moschata (Rifu)	cmocmoB242
CmoCh18G012550	Cucurbita moschata (Rifu)	cmocmoB275
CmoCh18G012550	Cucurbita moschata (Rifu)	cmocmoB333
CmoCh18G012550	Cucurbita maxima (Rimu)	cmacmoB255
CmoCh18G012550	Cucurbita maxima (Rimu)	cmacmoB327
CmoCh18G012550	Cucurbita maxima (Rimu)	cmacmoB591
CmoCh18G012550	Wild cucumber (PI 183967)	cmocpiB416
CmoCh18G012550	Cucumber (Chinese Long) v2	cmocuB411
CmoCh18G012550	Melon (DHL92) v3.5.1	cmomeB343
CmoCh18G012550	Watermelon (Charleston Gray)	cmowcgB348
CmoCh18G012550	Watermelon (Charleston Gray)	cmowcgB359
CmoCh18G012550	Watermelon (Charleston Gray)	cmowcgB363
CmoCh18G012550	Cucurbita pepo (Zucchini)	cmocpeB386
CmoCh18G012550	Cucurbita pepo (Zucchini)	cmocpeB414
CmoCh18G012550	Bottle gourd (USVL1VR-Ls)	cmolsiB353
CmoCh18G012550	Bottle gourd (USVL1VR-Ls)	cmolsiB371