Cp4.1LG09g00990 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g00990
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG09 : 577024 .. 584341 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATATAATAAAAGAAAATTCCCTATTCCTTCCTTTTGTTCTTTCTTTTACAATGGCCTCAAAATGGCCATCTCCGAAACCCACGAGAAAAATCTTCACCATCTCTCTAATCTTCCTCCTCTGCATATTTGCTTACTTTCTCGGCCTCCGTCAACACCCCTCCTCCGCCGTCGCCCTCCTCCGCACCACCCCATGCACCACCCTCCCAAACACCACCACCACCGCCGGAAAACCCAATTACTTCCCGGCATGCGGCATGGAGTACAGCGAGTACACGCCATGCGAGGACACGAAAAGGTCGCTGAAGTTCACAAGACACCGGCTGATTTACCGAGAGAGGCACTGCCCGGAGAAGGAGGAGATATTGAAGTGCCGTGTTCCTCCGCCGCCGGGGTACCGGAATCCGTTCCCATGGCCGGAGAGTAGAGATTACGCTTGGTACTTGAATGCGCCGCATAAATCCCTGACGGTGGAGAAGGCGGTGCAGAATTGGATAATATACGAAGGGGAGAGGTTCAGATTTCCCGGCGGAGGGACGATGTTCCCTAACGGAGCTGATGCGTATATTGACAAAATTGGGAAACTCATTAATCTGAAAGATGGGTCCATCAGAACCGCCATTGATACCGGCTGTGGGGTAATTAACCTCTTCATTCTTTCCCTTTCTTAACATCAAAATTCAATTATAAGTTTTCAAAATCTTTATGAACATTCTGTCCCAATGTTGACTCCGTGAAATTTTATTTTTAATTTTGAAAATATGTGTCGTAGTCAAAGGTTTATTTATTGGTTTGACCTCAACTTCCTGGGTCCAAGTGGCAGTCATGGAGTTACAATTTGGTTTGGAAAGTCCCATCATTCTCTGTCACCATATTTATAACAAAGTAATTGTTCCCAATATTTGCCTTCAAAATATTTAAATTAATTCGAACTTTTTATTTTTTTATTTTATTTTATTTTATTTATAAAGGTATTTTTAAATTTTCATGAGTATTTTTAAGCCTAATAATAATAATAAAGGTATTTATTTTTTAATTTTTAAAAAATAGTTGATGGGCAGTAATGAAACTTTAAATACTATTAAATTTAAAGATATTATTGAAATTTTTAAAACTTTATGAATATTTTTTATAGACAAAATACTAAATTTAAGATTATTTTTATTAATTGAGTCTAAAAATGATTTATTATATTATTCAAATTTCAACTTTTCAACTTTTTTTTTTACAATTAAAAAAAAAATTATAAATATATTATAAAATTGAAAATATAGAAACAAATTAGAAACTTTCATATATATATATATATAAACCAACCTTCCCACAATTGAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATCGTCTAGATTGAAGGAGTCGTTTGAATTTATCCATGGTTTGTTTATTCCTTATCTCGAAAATCTTATGTCATTCGAATCTAATATAATTTAAAGTTGTTGAACATAGTTAAGACGTATATACTCAATTAAGGTCCGATGTCATAAGTTTCTCTACTCCCACACGAGCCTTAGTTGTTGAACATTGGTAAGACGCATAAGGTGTTTTTGTACATATATGCTTTGTGGAGTAAGGCATAGTTGAATGGAGAAGAGAAGGGTGATTTATAAAGATTTGTTGATGATGATGATGAAGGTGGGAAGTTGGGGAGCTTATCTTCTGTCAAGGGACATTGTAACCATGTCGTTTGCGCCAAGGGACACCCACGAAGCTCAAGTTCAGTTCGCTTTGGAGCGAGGGGTTCCTGCTCTCATTGGCGTTCTCTCCTCCAAGAGACTGCCTTATCCTTCCTCTGCCTTTGACATGGCTCATTGCTCTCGCTGCCTCATTCCATGGCCACAACATGGTATTCTTTTCTATCAACATATCTTCACAACACTATTTGAACTCATTCAATTGATGTTGTTGTAGATGGCATCCTCCTCATTGAAGTCGATCGAGTTCTCCGCCCCGGCGGATACTGGATCCTCTCTGGCCCTCCCATCAACTGGAAGCAACACTGGAAAGGCTGGCAAAGAACAAAGGAAGATCTGAACTCTGAACAGCTCGCCATTGAAAAGTTAGCCAAAAGTCTCTGTTGGACTAAGCTTGTGGAACATGGTGATATTGCCATTTGGCAAAAGCCCATCAATCACTTGAACTGCAAAACCAACCCCAAGAACACCAACAATCCACCTTTCTGCAAGCCCCAAGATCCTGACAAAGCTTGGTATGATGTTCTTCATAGGCTTGGAGCTTGAGTTTTCTTTTCTCTTCCATTTCTCATTTGGTGCTTGAATTTGTCCTTTCAGGTATACAGAAATGCAAGCTTGTTTGACGCATTTGCCTCAAGTTTCAAGCAGTAAGGAAATTGCAGGAGGGAAATTGGCAAGATGGCCAGAGAGGCTAAGTGCAATCCCACAAAGGGTTAGCAGAGGAACTGTAAAAGGGGTCACTGAAGAAACGTTCATTCATGATTCTGAGCTATGGAGGAAGAGGTTGTTATATTACAGAACCATCAACAATCAGTTGAGTCAGCCTGGACGGTACCGCAATTTCTTAGACATGAATGCTTTCTTGGGTGGATTTGCTGCTGCTCTGGTTGATGACCCAGTTTGGGTGATGAATGTTGTCCCTGTGGATGTCAAAGTCAATACGCTCGGAGTTATATACGATAGGGGTTTGATCGGCACGTATCAAGATTGGTAAGTACTTAAGGCTGTATAGATTCATGTTCGTGTTTTTTCATGTTTTGGTATGCGCATTGAGCGAGACATAAGAGAGAGGCTTTTTCATTTAGCTACATTATAGTTGTTACAAAGAAATTGATATGTGACCGAACCTAAAAAAGCTCGTTGTATCCGAGAACTTACATTATGTCCTGTGGATGCATTGCAGGTGTGAGGCAATGTCTACATATCCAAGAACTTATGACTTCATTCATGCGGATTCAGTTTTTAGCCTCTATGAGAATAGGTACTCTCTTCTTCCATAGACTATGGAATTGTGAAGTTTTGTTCGTTCTTTTGCGAGATTCGACATTGATTGGAGAGGAACGAGTGCCAGCGAGGACGCTCGTTGGCCCCAAAGGAGATGGATCGTGAGATTCCACATCGATTGGAGAGAGAGGAACGAGTGCCAGCGAGGATGCTGGGACCTAAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAATATCCTTTATAAGGGTGTAGAAACCTCTCTCTAGCAGACGCGTTTTAAAAACCTTGAGGGGAAACCCGAAAGTGAAAGGAGAGAGGAACCAAACATTCTCTATAAGGGTGTTGAAACCTCTCCCTAGTAGACGCATTTTAAAAACCTTGACCGAAAACCCAAACATTCTTTATAAGGTTGTTGAAACCTCGCCCTGACATACATGTTTTATAAACCTTGAGGGGAAACCTGAAAGGGAAAGTCCAAAGAGGACAATATCTGCTAGCCGAGGACTTGGACAGTTACTTCAAGTTTATGTTGATTTTCACGCGCATCTAAATGATGTGAAACTGATGTTCTGCTGAAACTGCATTGCAGATGTGAAATGGAAGATATTCTACTCGAGATGGACAGAATTCTGAGACCAGAAGGAAGCGTAATCTTCCGAGAAAACATCGTTATATTGACGAAAATCAAGACGATAACCGATAAGTTGAACTGGAGCAGTCAAATTGTGCATTCTGAAGATGGATCTTATCATATGGAGAAGCTTCTATTTGCAGTAAAAAACTATTGGACAGCACCTCCTGAGCATTCTAATCAACAAGGCTCTAAACCAACTTAACCACTCAATCACATCCATGTTCTTTTTAGTACTTGATTTACCATCATTTATTACCAAGAACAGTGAATTACATTCAATGAACTGATATGATCAATGGGAATGAATCATACTTTCAATCTTGATTTTGGTTAATTTTGGGTACCCAACACAAAAGCTATGAACTCAGAATTGGCATGTAGGTGATTCATGCAAACCTCAATCTTTCAACACCTATAAATAACACCCAAAACCCTGAAGAAATCATCAAACAAACAGATTCAGAAGAGAAAAAACAAATGGCAGGAACCAAGTCTCATGGGGTGCAGCAAGTTATATTGCTCTTGTTGGTGTCTGTTCTGCTGTGGCAATCACAGGCACAGGCGCAAAGCTGCTCAACTCAGCTCAGCAACCTTAATGGGTGTGCACCTTTTGTGCTTCCTGGTGCCAGTAACCCAAGCCCAGAGTGTTGTGCAGCGCTTGGAGCTGTGCAGCAGGATTGCCTGTGCAGCACCCTTAGAATTTCCTCCACTCTGCCTTCGCTTTGCCGCCTTCCACCTCTCTCTTGTGGTCAGTTCTCTTCGTTTTTCTAACCATTTTTACTTGAGAATGGACTGTAATGAATGAAGGGGTTTTCTTTGATTTGTGCTTCGTTTCAGGTACAAACTAGAGGAGATGGCTGATGGGTATTACAAGAAATGAATAATGCTCCACTTATATCATTCCTTTCTCTTTTCTTTACTGTTCTTGGCGTCCTTTGATCTAAAGTCAATGTTCTTAGAAGTCTGGTTTCGTTGAATAAAATGGAAGCTTTTATCTTTTTCTTCTCTCTATGATTACATTACAATAACTACAGAAAGTTAAGAAACTGCCTAATCCTGCACTAATTATCATAATTTTAACTTAATCACAGAAAGAGATGGTTTAAGCTGTTGGTGAATGAATTTATTAAACAGTTCAAAAAATGGGGTTAGGTGAATCACACTCTTTTCCACCCGCTATCAACCTCATATCAAGAATGTGTGTGAGATCCTACGTCGGTTAGAGAGGGAAACGAAGCATTCTTTAAGGGGTGGAAATCTCTTCGAGGGTGAAATCATGCATTGGTTAGAGAGGGGAACGAAACATTCCTTGTACATGTGTGAAAATCTATCCCTACCAGACTCGTTTTAAAACTTTGAAAGAAATGTCGAAAGGAAAACTCAAGAAGACAATATCTGTTAGCGACGGGCTCGAAAGGAAAAATTTAAAAATGACACCATCTGCTCTCGAAATAGAAAATCGAGACGGGACAATATCGGGTGGGCGAGCTCAAAAGGAAAAACTATTACTATTATTTACCCATTTTTACAAAAGTTAACACCAAACTAAGTATAGGATTAATTTAAGATTAAATTCAAAGATTTAGATTAAAAAAAAAAGAACCCACATGAGAAAAAAAATGATTTTTTAAGGAAGATTATTTAGTGATGAAATGCCAAGCCCGTCGCCGCTCTCAACGATGTCCCAAACTTTTACCCGCCGCCCGCGCAAACACGGCAAGGCAGCAAGCAGACATGCTTACTATGATGGGCAGTCAAGCTTCAATACTCAGTACAGCTAAAGCACAACGAACAGGGGAGAAGAGCGAGGATGCATAACAAATTCCCCTTCAACTCGAGTTTTCAGAGTACGCTCAATCTCCTCTCCTTTGCCCTCCAATTCATCTTCCTTCATGATGAAATTAATTTCAGAGCTCTTCTTATATGTTGGATGTTTTTTCCCTTTTCTTTTTTGGCGAGGGGGGCCTATGGAATTCCCCCTCTTTCTGGAAATTCGTTGCTAGTTTCTTGAATGAGCAAATTGATTGTATTCTATTATGTGGACCATGAACTGTTATTTCCTTAATTCTTTACGGAGTTTTCTTTGCTCTCCTCTTAAACCCTTTGCTACTATTACCCATTTGTTCACTTCTACCAAATGTATTAACACATCGGTTAAGTGTATAAGCGACCTACGAACCAATGATGTTTCTGGGTTTATTCAAAATGGGAGTGGCAACACTTCATCCATTTCCTATTCCAAGCTTTTATTAGAGTTTACTGCTTCCAAGGATGTAAAATCAGGCATGGAAATCCATGCTCGTATGATCAGGTTAGGATTGTGTACAGATACAGGGGTAAGGAACAAATTGATAAACTTGTACTCAAAATGTCAGTGTTTTCCAGCTGCTCGAAAACTTGTTATGGACGGTACCGAGCCAGATTTAGTTTCTTGGTCTGCTTTGATATCTGGGTATGCTCAGAATGGTCGTGGAGAAGAAGCCCTTTTGACCTTTTATGAAATGCATTTGTTGGGAGTGAAGGGCAATGAGTTCACTTTCCCTAGTGTTTTAAAAGCCTGTTCTTTAACGAGGAACTTGGAACTGGGGAAGCAGATTCATGGGATTGCTTTAGTGACAGGTTTTGAATCTGATGTGTTTGTTGCCAATACTTTGGTTGTTATGTATGCTAAATGTGGGGAGTTTAGTGATTCGAAGAAGCTGTTCGAGGAAATTCCAGAACGAAACGTCGTATCTTGGAATGCTTTGTTTTCTTGTTATGTGCAGATTGATTTCTTTTCAGAAGCGATTAATTTGTTTCGAGAAATGGTTTCTACTGGACTTACTCCAAATGAATTTAGTCTCTCCACTGTATTAAACGCTTGTGCTGGTTTGGAGCACATCGATTCCGGAATGGAAATTCATGGATACTTGATAAAGCTTGGGTATGATTCTGATCCCTTTTCTGCTAATGCACTTCTTGACATGTATGCTAAAGCTGGATGTCCTGAATCTGCAATAGCCGTGTTTTATGAAATCCCGAAACCTGATATCGTTTCATGGAATGCTGTAATTGCTGGCTGTGTTCTTCATGAGTATAATGATTTAGCTCTTAAATTGTTTGGGATGATGGGAAGCTTTAGAGTGAGTCCTAACATGTTTACCCTATCAAGTGCTCTTAAAGCTTGTGCTGGGTTAGGGCTTATCAAAATAGGTAGACAATTGCACTCTGCCTTGATGATGATGAATATGGATTCAGATTCATTTGTGGGTGTTGGATTGATAGATATGTATTCGAAATGTGGTTTACTGCAAGATGCACGGAAGGTGTTTGATCTAATTCCTAAAAGGGACTCGATCGCATGGAATTCTATTATTTCCAGTTACTCCAATTGTGGGTATGATATGGAAGCTATATCCCTCTTTACAATGATGTATAAAGAAGGTTTAGAATTCAACCAGACCACATTGTCAACAATCCTCAAATCTTCAGCTGGCTCGCAGGCCATTGCGTTTTGCGAACAAGTTCATGCGATATCGATCAAATCAGGTTACCAATATGATGGTTACGTAGCAAATAGCCTGCTCGATTCTTATGGAAAAGGCTGTCGATTAGAAGAGGCAGAAAAAGTTTTTGAAGAGTGTCCTGCTGAAGATTTGGTGGCGTATACGTCAATGATTACTGCTTACTCCCAATATGGCTTGGGAGAAGAGGCTCTAAAA

mRNA sequence

AAATATAATAAAAGAAAATTCCCTATTCCTTCCTTTTGTTCTTTCTTTTACAATGGCCTCAAAATGGCCATCTCCGAAACCCACGAGAAAAATCTTCACCATCTCTCTAATCTTCCTCCTCTGCATATTTGCTTACTTTCTCGGCCTCCGTCAACACCCCTCCTCCGCCGTCGCCCTCCTCCGCACCACCCCATGCACCACCCTCCCAAACACCACCACCACCGCCGGAAAACCCAATTACTTCCCGGCATGCGGCATGGAGTACAGCGAGTACACGCCATGCGAGGACACGAAAAGGTCGCTGAAGTTCACAAGACACCGGCTGATTTACCGAGAGAGGCACTGCCCGGAGAAGGAGGAGATATTGAAGTGCCGTGTTCCTCCGCCGCCGGGGTACCGGAATCCGTTCCCATGGCCGGAGAGTAGAGATTACGCTTGGTACTTGAATGCGCCGCATAAATCCCTGACGGTGGAGAAGGCGGTGCAGAATTGGATAATATACGAAGGGGAGAGGTTCAGATTTCCCGGCGGAGGGACGATGTTCCCTAACGGAGCTGATGCGTATATTGACAAAATTGGGAAACTCATTAATCTGAAAGATGGGTCCATCAGAACCGCCATTGATACCGGCTGTGGGGTGGGAAGTTGGGGAGCTTATCTTCTGTCAAGGGACATTGTAACCATGTCGTTTGCGCCAAGGGACACCCACGAAGCTCAAGTTCAGTTCGCTTTGGAGCGAGGGGTTCCTGCTCTCATTGGCGTTCTCTCCTCCAAGAGACTGCCTTATCCTTCCTCTGCCTTTGACATGGCTCATTGCTCTCGCTGCCTCATTCCATGGCCACAACATGATGGCATCCTCCTCATTGAAGTCGATCGAGTTCTCCGCCCCGGCGGATACTGGATCCTCTCTGGCCCTCCCATCAACTGGAAGCAACACTGGAAAGGCTGGCAAAGAACAAAGGAAGATCTGAACTCTGAACAGCTCGCCATTGAAAAGTTAGCCAAAAGTCTCTGTTGGACTAAGCTTGTGGAACATGGTGATATTGCCATTTGGCAAAAGCCCATCAATCACTTGAACTGCAAAACCAACCCCAAGAACACCAACAATCCACCTTTCTGCAAGCCCCAAGATCCTGACAAAGCTTGGTATACAGAAATGCAAGCTTGTTTGACGCATTTGCCTCAAGTTTCAAGCAGTAAGGAAATTGCAGGAGGGAAATTGGCAAGATGGCCAGAGAGGCTAAGTGCAATCCCACAAAGGGTTAGCAGAGGAACTGTAAAAGGGGTCACTGAAGAAACGTTCATTCATGATTCTGAGCTATGGAGGAAGAGGTTGTTATATTACAGAACCATCAACAATCAGTTGAGTCAGCCTGGACGGTACCGCAATTTCTTAGACATGAATGCTTTCTTGGGTGGATTTGCTGCTGCTCTGGTTGATGACCCAGTTTGGGTGATGAATGTTGTCCCTGTGGATGTCAAAGTCAATACGCTCGGAGTTATATACGATAGGGGTTTGATCGGCACGTATCAAGATTGGTGTGAGGCAATGTCTACATATCCAAGAACTTATGACTTCATTCATGCGGATTCAGTTTTTAGCCTCTATGAGAATAGATGTGAAATGGAAGATATTCTACTCGAGATGGACAGAATTCTGAGACCAGAAGGAAGCGTAATCTTCCGAGAAAACATCGTTATATTGACGAAAATCAAGACGATAACCGATAAGTTGAACTGGAGCAGTCAAATTGTGCATTCTGAAGATGGATCTTATCATATGGAGAAGCTTCTATTTGCAGTAAAAAACTATTGGACAGCACCTCCTGAGCATTCTAATCAACAAGGCTCTAAACCAACTTAACCACTCAATCACATCCATGTTCTTTTTAGTACTTGATTTACCATCATTTATTACCAAGAACAGTGAATTACATTCAATGAACTGATATGATCAATGGGAATGAATCATACTTTCAATCTTGATTTTGGTTAATTTTGGGTACCCAACACAAAAGCTATGAACTCAGAATTGGCATGTAGGTGATTCATGCAAACCTCAATCTTTCAACACCTATAAATAACACCCAAAACCCTGAAGAAATCATCAAACAAACAGATTCAGAAGAGAAAAAACAAATGGCAGGAACCAAGTCTCATGGGGTGCAGCAAGTTATATTGCTCTTGTTGGTGTCTGTTCTGCTGTGGCAATCACAGGCACAGGCGCAAAGCTGCTCAACTCAGCTCAGCAACCTTAATGGGTGTGCACCTTTTGTGCTTCCTGGTGCCAGTAACCCAAGCCCAGAGTGTTGTGCAGCGCTTGGAGCTGTGCAGCAGGATTGCCTGTGCAGCACCCTTAGAATTTCCTCCACTCTGCCTTCGCTTTGCCGCCTTCCACCTCTCTCTTGTGGCATGGAAATCCATGCTCGTATGATCAGGTTAGGATTGTGTACAGATACAGGGGTAAGGAACAAATTGATAAACTTGTACTCAAAATGTCAGTGTTTTCCAGCTGCTCGAAAACTTGTTATGGACGGTACCGAGCCAGATTTAGTTTCTTGGTCTGCTTTGATATCTGGGTATGCTCAGAATGGTCGTGGAGAAGAAGCCCTTTTGACCTTTTATGAAATGCATTTGTTGGGAGTGAAGGGCAATGAGTTCACTTTCCCTAGTGTTTTAAAAGCCTGTTCTTTAACGAGGAACTTGGAACTGGGGAAGCAGATTCATGGGATTGCTTTAGTGACAGGTTTTGAATCTGATGTGTTTGTTGCCAATACTTTGGTTGTTATGTATGCTAAATGTGGGGAGTTTAGTGATTCGAAGAAGCTGTTCGAGGAAATTCCAGAACGAAACGTCGTATCTTGGAATGCTTTGTTTTCTTGTTATGTGCAGATTGATTTCTTTTCAGAAGCGATTAATTTGTTTCGAGAAATGGTTTCTACTGGACTTACTCCAAATGAATTTAGTCTCTCCACTGTATTAAACGCTTGTGCTGGTTTGGAGCACATCGATTCCGGAATGGAAATTCATGGATACTTGATAAAGCTTGGGTATGATTCTGATCCCTTTTCTGCTAATGCACTTCTTGACATGTATGCTAAAGCTGGATGTCCTGAATCTGCAATAGCCGTGTTTTATGAAATCCCGAAACCTGATATCGTTTCATGGAATGCTGCCATTGCGTTTTGCGAACAAGTTCATGCGATATCGATCAAATCAGGTTACCAATATGATGGTTACGTAGCAAATAGCCTGCTCGATTCTTATGGAAAAGGCTGTCGATTAGAAGAGGCAGAAAAAGTTTTTGAAGAGTGTCCTGCTGAAGATTTGGTGGCGTATACGTCAATGATTACTGCTTACTCCCAATATGGCTTGGGAGAAGAGGCTCTAAAA

Coding sequence (CDS)

ATGGCAGGAACCAAGTCTCATGGGGTGCAGCAAGTTATATTGCTCTTGTTGGTGTCTGTTCTGCTGTGGCAATCACAGGCACAGGCGCAAAGCTGCTCAACTCAGCTCAGCAACCTTAATGGGTGTGCACCTTTTGTGCTTCCTGGTGCCAGTAACCCAAGCCCAGAGTGTTGTGCAGCGCTTGGAGCTGTGCAGCAGGATTGCCTGTGCAGCACCCTTAGAATTTCCTCCACTCTGCCTTCGCTTTGCCGCCTTCCACCTCTCTCTTGTGGCATGGAAATCCATGCTCGTATGATCAGGTTAGGATTGTGTACAGATACAGGGGTAAGGAACAAATTGATAAACTTGTACTCAAAATGTCAGTGTTTTCCAGCTGCTCGAAAACTTGTTATGGACGGTACCGAGCCAGATTTAGTTTCTTGGTCTGCTTTGATATCTGGGTATGCTCAGAATGGTCGTGGAGAAGAAGCCCTTTTGACCTTTTATGAAATGCATTTGTTGGGAGTGAAGGGCAATGAGTTCACTTTCCCTAGTGTTTTAAAAGCCTGTTCTTTAACGAGGAACTTGGAACTGGGGAAGCAGATTCATGGGATTGCTTTAGTGACAGGTTTTGAATCTGATGTGTTTGTTGCCAATACTTTGGTTGTTATGTATGCTAAATGTGGGGAGTTTAGTGATTCGAAGAAGCTGTTCGAGGAAATTCCAGAACGAAACGTCGTATCTTGGAATGCTTTGTTTTCTTGTTATGTGCAGATTGATTTCTTTTCAGAAGCGATTAATTTGTTTCGAGAAATGGTTTCTACTGGACTTACTCCAAATGAATTTAGTCTCTCCACTGTATTAAACGCTTGTGCTGGTTTGGAGCACATCGATTCCGGAATGGAAATTCATGGATACTTGATAAAGCTTGGGTATGATTCTGATCCCTTTTCTGCTAATGCACTTCTTGACATGTATGCTAAAGCTGGATGTCCTGAATCTGCAATAGCCGTGTTTTATGAAATCCCGAAACCTGATATCGTTTCATGGAATGCTGCCATTGCGTTTTGCGAACAAGTTCATGCGATATCGATCAAATCAGGTTACCAATATGATGGTTACGTAGCAAATAGCCTGCTCGATTCTTATGGAAAAGGCTGTCGATTAGAAGAGGCAGAAAAAGTTTTTGAAGAGTGTCCTGCTGAAGATTTGGTGGCGTATACGTCAATGATTACTGCTTACTCCCAATATGGCTTGGGAGAAGAGGCTCTAAAA

Protein sequence

MAGTKSHGVQQVILLLLVSVLLWQSQAQAQSCSTQLSNLNGCAPFVLPGASNPSPECCAALGAVQQDCLCSTLRISSTLPSLCRLPPLSCGMEIHARMIRLGLCTDTGVRNKLINLYSKCQCFPAARKLVMDGTEPDLVSWSALISGYAQNGRGEEALLTFYEMHLLGVKGNEFTFPSVLKACSLTRNLELGKQIHGIALVTGFESDVFVANTLVVMYAKCGEFSDSKKLFEEIPERNVVSWNALFSCYVQIDFFSEAINLFREMVSTGLTPNEFSLSTVLNACAGLEHIDSGMEIHGYLIKLGYDSDPFSANALLDMYAKAGCPESAIAVFYEIPKPDIVSWNAAIAFCEQVHAISIKSGYQYDGYVANSLLDSYGKGCRLEEAEKVFEECPAEDLVAYTSMITAYSQYGLGEEALK

Homology

[Close]

BLAST of Cp4.1LG09g00990 vs. Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.6e-54
Identity = 125/370 (33.78%), Postives = 196/370 (52.97%), Query Frame = 1


Query: 73  LRISSTLPSLCRLPPL---------SCGMEIHARMIRLGLCTDTGVRNKLINLYSKCQCF 132
           +R +  +PS    PPL         S   + HA +++ GL +D  VRN LI+ YS    F
Sbjct: 95  MRRNGVIPSRHTFPPLLKAVFKLRDSNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLF 154

Query: 133 PAARKLVMDGTEPDLVSWSALISGYAQNGRGEEALLTFYEMHLLGVKGNEFTFPSVLKAC 192
             A +L     + D+V+W+A+I G+ +NG   EA++ F EM   GV  NE T  SVLKA 
Sbjct: 155 DFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAA 214

Query: 193 SLTRNLELGKQIHGIALVTG-FESDVFVANTLVVMYAKCGEFSDSKKLFEEIPERNVVSW 252
               ++  G+ +HG+ L TG  + DVF+ ++LV MY KC  + D++K+F+E+P RNVV+W
Sbjct: 215 GKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTW 274

Query: 253 NALFSCYVQIDFFSEAINLFREMVSTGLTPNEFSLSTVLNACAGLEHIDSGMEIHGYLIK 312
            AL + YVQ   F + + +F EM+ + + PNE +LS+VL+ACA +  +  G  +H Y+IK
Sbjct: 275 TALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIK 334

Query: 313 LGYDSDPFSANALLDMYAKAGCPESAIAVFYEIPKPDIVSWNAAI-AFCEQVHA------ 372
              + +  +   L+D+Y K GC E AI VF  + + ++ +W A I  F    +A      
Sbjct: 335 NSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDL 394

Query: 373 --ISIKSGYQYDGYVANSLLDSYGKGCRLEEAEKVFEEC-------PAEDLVAYTSMITA 417
               + S    +     ++L +   G  +EE  ++F          P  D   Y  M+  
Sbjct: 395 FYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKAD--HYACMVDL 454

[Close]

BLAST of Cp4.1LG09g00990 vs. Swiss-Prot
Match: PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.7e-51
Identity = 121/343 (35.28%), Postives = 182/343 (53.06%), Query Frame = 1


Query: 76  SSTLPSLCRLPPLSCGMEIHARMIRLGLCTDTGVRNKLINLYSKCQCFPAARKLVMDGTE 135
           ++ L SL     +  G +IH   I+ GL     + N L+ +YSKC+    A K+     +
Sbjct: 225 TAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGD 284

Query: 136 PDLVSWSALISGYAQNGRGEEALLTFYEMHLLGVKGNEFTFPSVLKACSLTRNLELGKQI 195
            + ++WSA+++GY+QNG   EA+  F  M   G+K +E+T   VL ACS    LE GKQ+
Sbjct: 285 RNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQL 344

Query: 196 HGIALVTGFESDVFVANTLVVMYAKCGEFSDSKKLFEEIPERNVVSWNALFSCYVQIDFF 255
           H   L  GFE  +F    LV MYAK G  +D++K F+ + ER+V  W +L S YVQ    
Sbjct: 345 HSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDN 404

Query: 256 SEAINLFREMVSTGLTPNEFSLSTVLNACAGLEHIDSGMEIHGYLIKLGYDSDPFSANAL 315
            EA+ L+R M + G+ PN+ ++++VL AC+ L  ++ G ++HG+ IK G+  +    +AL
Sbjct: 405 EEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSAL 464

Query: 316 LDMYAKAGCPESAIAVFYEIPKPDIVSWNAAIAFCEQVHAISIKSGYQYDGYVANSLLDS 375
             MY+K G  E    VF   P  D+VSWNA I            SG  ++G         
Sbjct: 465 STMYSKCGSLEDGNLVFRRTPNKDVVSWNAMI------------SGLSHNG--------- 524

Query: 376 YGKGCRLEEAEKVFEECPAE----DLVAYTSMITAYSQYGLGE 415
                + +EA ++FEE  AE    D V + ++I+A S  G  E
Sbjct: 525 -----QGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVE 541

[Close]

BLAST of Cp4.1LG09g00990 vs. Swiss-Prot
Match: PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-49
Identity = 115/358 (32.12%), Postives = 195/358 (54.47%), Query Frame = 1


Query: 76  SSTLPSLCRLPPLSCGMEIHARMIRLGLCTDTGVRNKLINLYSKCQCFPAARKLV--MDG 135
           +S L +   L  +  G+ +H  +    L  + G+ +KL+ LY+ C     A ++   M  
Sbjct: 96  ASLLETCYSLRAIDHGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEVAHEVFDRMSK 155

Query: 136 TEPDLVSWSALISGYAQNGRGEEALLTFYEMHLLGVKGNEFTFPSVLKACSLTRNLELGK 195
            +    +W++LISGYA+ G+ E+A+  +++M   GVK + FTFP VLKAC    ++++G+
Sbjct: 156 RDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGE 215

Query: 196 QIHGIALVTGFESDVFVANTLVVMYAKCGEFSDSKKLFEEIPERNVVSWNALFSCYVQID 255
            IH   +  GF  DV+V N LVVMYAKCG+   ++ +F+ IP ++ VSWN++ + Y+   
Sbjct: 216 AIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHG 275

Query: 256 FFSEAINLFREMVSTGLTPNEFSLSTVLNACAGLEHIDSGMEIHGYLIKLGYDSDPFSAN 315
              EA+++FR MV  G+ P++ ++S+VL      +H   G ++HG++I+ G + +   AN
Sbjct: 276 LLHEALDIFRLMVQNGIEPDKVAISSVLARVLSFKH---GRQLHGWVIRRGMEWELSVAN 335

Query: 316 ALLDMYAKAGCPESAIAVFYEIPKPDIVSWNAAIA----------FCEQVHAISIKSGYQ 375
           AL+ +Y+K G    A  +F ++ + D VSWNA I+          + EQ+H  + K    
Sbjct: 336 ALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSKNSNGLKYFEQMHRANAKP--- 395

Query: 376 YDGYVANSLLDSYGKGCRLEEAEKVFEECPAE-----DLVAYTSMITAYSQYGLGEEA 417
            DG    S+L        +E+ E++F     E      +  Y  M+  Y + G+ EEA
Sbjct: 396 -DGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKMEHYACMVNLYGRAGMMEEA 446

[Close]

BLAST of Cp4.1LG09g00990 vs. Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.6e-49
Identity = 128/435 (29.43%), Postives = 211/435 (48.51%), Query Frame = 1


Query: 29  AQSCSTQLSNLNGCAPFVLPGASNPSPECCAALGAVQQDCLCSTLRISSTLPSLCRLPPL 88
           A S S  +    G + ++  G  +   +C A +  V+ D  C  +     L +  ++  L
Sbjct: 274 ASSVSEIIFRNKGLSEYLHSGQYSALLKCFADM--VESDVECDQVTFILMLATAVKVDSL 333

Query: 89  SCGMEIHARMIRLGLCTDTGVRNKLINLYSKCQCFPAARKLVMDGTEPDLVSWSALISGY 148
           + G ++H   ++LGL     V N LIN+Y K + F  AR +  + +E DL+SW+++I+G 
Sbjct: 334 ALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGI 393

Query: 149 AQNGRGEEALLTFYEMHLLGVKGNEFTFPSVLKACS-LTRNLELGKQIHGIALVTGFESD 208
           AQNG   EA+  F ++   G+K +++T  SVLKA S L   L L KQ+H  A+     SD
Sbjct: 394 AQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSD 453

Query: 209 VFVANTLVVMYAKCGEFSDSKKLFEEIPERNVVSWNALFSCYVQIDFFSEAINLFREMVS 268
            FV+  L+  Y++     +++ LFE     ++V+WNA+ + Y Q     + + LF  M  
Sbjct: 454 SFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHK 513

Query: 269 TGLTPNEFSLSTVLNACAGLEHIDSGMEIHGYLIKLGYDSDPFSANALLDMYAKAGCPES 328
            G   ++F+L+TV   C  L  I+ G ++H Y IK GYD D + ++ +LDMY K G   +
Sbjct: 514 QGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSA 573

Query: 329 AIAVFYEIPKPDIVSWNAAIAFC------------------------------------- 388
           A   F  IP PD V+W   I+ C                                     
Sbjct: 574 AQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSC 633

Query: 389 -------EQVHAISIKSGYQYDGYVANSLLDSYGKGCRLEEAEKVFEECPAEDLVAYTSM 419
                   Q+HA ++K     D +V  SL+D Y K   +++A  +F+     ++ A+ +M
Sbjct: 634 LTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAM 693

[Close]

BLAST of Cp4.1LG09g00990 vs. Swiss-Prot
Match: PP357_ARATH (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.6e-49
Identity = 115/347 (33.14%), Postives = 181/347 (52.16%), Query Frame = 1


Query: 76  SSTLPSLCRLPPLSCGMEIHARMIRLGLCTDTGVRNKLINLYSKCQCFPAARKLVMDGTE 135
           SS L S   L  L  G ++HA  I+  L  D+ V N LI++Y+KC C   ARK+      
Sbjct: 354 SSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAA 413

Query: 136 PDLVSWSALISGYAQNGRG---EEALLTFYEMHLLGVKGNEFTFPSVLKACSLTRNLELG 195
            D+V ++A+I GY++ G      EAL  F +M    ++ +  TF S+L+A +   +L L 
Sbjct: 414 ADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLS 473

Query: 196 KQIHGIALVTGFESDVFVANTLVVMYAKCGEFSDSKKLFEEIPERNVVSWNALFSCYVQI 255
           KQIHG+    G   D+F  + L+ +Y+ C    DS+ +F+E+  +++V WN++F+ YVQ 
Sbjct: 474 KQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQ 533

Query: 256 DFFSEAINLFREMVSTGLTPNEFSLSTVLNACAGLEHIDSGMEIHGYLIKLGYDSDPFSA 315
               EA+NLF E+  +   P+EF+ + ++ A   L  +  G E H  L+K G + +P+  
Sbjct: 534 SENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYIT 593

Query: 316 NALLDMYAKAGCPESAIAVFYEIPKPDIVSWNAAIAFCEQVHAISIKSGYQYDGYVANSL 375
           NALLDMYAK G PE A   F      D+V WN+ I                       S 
Sbjct: 594 NALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVI-----------------------SS 653

Query: 376 LDSYGKGCR-LEEAEKVFEECPAEDLVAYTSMITAYSQYGLGEEALK 419
             ++G+G + L+  EK+  E    + + +  +++A S  GL E+ LK
Sbjct: 654 YANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLK 677

[Close]

BLAST of Cp4.1LG09g00990 vs. TrEMBL
Match: A0A0A0L8M4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180420 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 5.0e-127
Identity = 255/428 (59.58%), Postives = 296/428 (69.16%), Query Frame = 1


Query: 36  LSNL--NGCAPFVLPGASNPSPECCAALGAVQQDCLCSTLRISSTLPSLCRLPPLSCGME 95
           +SNL  N  + F+L  +SNPS                 ++     L        +S GM 
Sbjct: 29  ISNLRPNDVSGFILDSSSNPS-----------------SISYPKLLLQFTASKDVSSGMA 88

Query: 96  IHARMIRLGLCTDTGVRNKLINLYSKCQCFPAARKLVMDGTEPDLVSWSALISGYAQNGR 155
           IHAR+IRLGL    G+RN+L+NLYSKCQCF  ARKLV+D +EPDLVSWSALISGY QNGR
Sbjct: 89  IHARIIRLGLL---GLRNRLVNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGR 148

Query: 156 GEEALLTFYEMHLLGVKGNEFTFPSVLKACSLTRNLELGKQIHGIALVTGFESDVFVANT 215
           GEEALLT+YEM+LLG KGNEFTF SVLK CSLTRNLELGKQIH +ALVTGFESDVFVANT
Sbjct: 149 GEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVTGFESDVFVANT 208

Query: 216 LVVMYAKCGEFSDSKKLFEEIPERNVVSWNALFSCYVQIDFFSEAINLFREMVSTGLTPN 275
           LVVMYAKCGEF DSKKLFE IPERNVVSWNALFSCYVQIDFF EAINLF+EM+STG++PN
Sbjct: 209 LVVMYAKCGEFGDSKKLFEAIPERNVVSWNALFSCYVQIDFFGEAINLFQEMISTGISPN 268

Query: 276 EFSLSTVLNACAGLEHIDSGMEIHGYLIKLGYDSDPFSANALLDMYAKAGCPESAIAVFY 335
           EFSLSTVLNACAGLE  + GM++HGYLIKLGYDSDPFSANALLDMYAK+GCPE+AIAVFY
Sbjct: 269 EFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFY 328

Query: 336 EIPKPDIVSWNAAIAFC--EQVHAISIKSGYQYDGY-VANSL--LDSYGKGCR------- 395
           EIPKPDIVSWNA IA C   + + +++K   +   Y VA S+  L S  K C        
Sbjct: 329 EIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKL 388

Query: 396 ------------LEE--------------------AEKVFEECPAEDLVAYTSMITAYSQ 418
                       +E                     A  VF+  P +D++ + S+I+ YS 
Sbjct: 389 GRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPKKDVIVWNSIISGYSN 436

[Close]

BLAST of Cp4.1LG09g00990 vs. TrEMBL
Match: A5B2K7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023708 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 2.3e-111
Identity = 213/381 (55.91%), Postives = 261/381 (68.50%), Query Frame = 1


Query: 55  PECCAALGAVQQDCLCST-LRISSTLPSLCRLPPLSCGMEIHARMIRLGLCTDTGVRNKL 114
           P+  A L  + +     T +  S  L   C    L  G++IHA + + GL  D  +RN L
Sbjct: 38  PQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHL 97

Query: 115 INLYSKCQCFPAARKLVMDGTEPDLVSWSALISGYAQNGRGEEALLTFYEMHLLGVKGNE 174
           INLYSKC+ F  ARKLV + +EPDLVSWSALISGYAQNG G  AL+ F+EMHLLGVK NE
Sbjct: 98  INLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNE 157

Query: 175 FTFPSVLKACSLTRNLELGKQIHGIALVTGFESDVFVANTLVVMYAKCGEFSDSKKLFEE 234
           FTF SVLKACS+ ++L +GKQ+HG+ +V+GFE DVFVANTLVVMYAKC EF DSK+LF+E
Sbjct: 158 FTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDE 217

Query: 235 IPERNVVSWNALFSCYVQIDFFSEAINLFREMVSTGLTPNEFSLSTVLNACAGLEHIDSG 294
           IPERNVVSWNALFSCYVQ DF  EA+ LF EMV +G+ PNEFSLS+++NAC GL     G
Sbjct: 218 IPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRG 277

Query: 295 MEIHGYLIKLGYDSDPFSANALLDMYAKAGCPESAIAVFYEIPKPDIVSWNAAIAFC--- 354
             IHGYLIKLGYD DPFSANAL+DMYAK G    AI+VF +I +PDIVSWNA IA C   
Sbjct: 278 KIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLH 337

Query: 355 --------------EQVHAISIKSGYQYDGYVANSLLDSYGKGCRLEEAEKVFEECPAED 414
                          Q+H+  +K   + D +V+  L+D Y K   LE+A   F   P +D
Sbjct: 338 EHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKD 397

Query: 415 LVAYTSMITAYSQYGLGEEAL 418
           L+A+ ++I+ YSQY    EAL
Sbjct: 398 LIAWNAIISGYSQYWEDMEAL 418

[Close]

BLAST of Cp4.1LG09g00990 vs. TrEMBL
Match: A0A061GGD5_THECC (Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_029817 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 3.0e-103
Identity = 199/373 (53.35%), Postives = 246/373 (65.95%), Query Frame = 1


Query: 89  SCGMEIHARMIRLGLCTDTGVRNKLINLYSKCQCFPAARKLVMDGTEPDLVSWSALISGY 148
           S GM+IHA  I+ G   D   RN LI+LY+KC+ F  ARKLV +  EPDLVSWSALISGY
Sbjct: 86  SPGMQIHAITIKFGSTKDPKSRNLLISLYAKCKLFRYARKLVDESPEPDLVSWSALISGY 145

Query: 149 AQNGRGEEALLTFYEMHLLGVKGNEFTFPSVLKACSLTRNLELGKQIHGIALVTGFESDV 208
           AQNG G+EA+L FYEMHLLGV+ N+FTFPSVLKAC+ TR+LELG+QIH + +VTGFE D 
Sbjct: 146 AQNGFGKEAILAFYEMHLLGVRCNDFTFPSVLKACTFTRDLELGRQIHAVVVVTGFECDE 205

Query: 209 FVANTLVVMYAKCGEFSDSKKLFEEIPERNVVSWNALFSCYVQIDFFSEAINLFREMVST 268
           +VAN+LVVMYAKCGEF DS++LFE++PER+VVSWNAL SCYVQ D+  EA+ LF EMVS+
Sbjct: 206 YVANSLVVMYAKCGEFGDSRRLFEDMPERSVVSWNALLSCYVQSDYCGEAVELFHEMVSS 265

Query: 269 GLTPNEFSLSTVLNACAGLEHIDSGMEIHGYLIKLGYDSDPFSANALLDMYAKAGCPESA 328
           G+ PNEFSLS+++NA  GLE    G + HG+LIKLGYDSDPFS NAL+DM AK G  E A
Sbjct: 266 GIKPNEFSLSSMINAYTGLEDSGQGRKTHGFLIKLGYDSDPFSKNALVDMCAKVGSLEDA 325

Query: 329 IAVFYEIPKPDIVSWNAAIAFC-------------------------------------- 388
           + VF EI +PDIVSWNA IA C                                      
Sbjct: 326 VFVFEEIARPDIVSWNAVIAGCVLHENHDWALELFGQMRRSGTHPNMFTLSSALKACAGT 385

Query: 389 ------EQVHAISIKSGYQYDGYVANSLLDSYGKGCRLEEAEKVFEECPAEDLVAYTSMI 418
                  Q+H   IK     D +V   L+D Y K   + +A  VF   P +DL+A+ ++I
Sbjct: 386 GHKKLGRQLHCNLIKINVGSDPFVDVGLIDMYSKTYLMNDARMVFNLMPDKDLIAWNAVI 445

[Close]

BLAST of Cp4.1LG09g00990 vs. TrEMBL
Match: B9H2R5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04740g PE=4 SV=2)

HSP 1 Score: 380.9 bits (977), Expect = 1.9e-102
Identity = 194/369 (52.57%), Postives = 247/369 (66.94%), Query Frame = 1


Query: 92  MEIHARMIRLGLCTDTGVRNKLINLYSKCQCFPAARKLVMDGTEPDLVSWSALISGYAQN 151
           MEIHAR+I+ GL  D  +RN L+NLYSKCQ F  ARKL+   TEPDLVSWSALISGY+QN
Sbjct: 1   MEIHARVIKFGLSQDPKIRNYLVNLYSKCQLFGYARKLLDRSTEPDLVSWSALISGYSQN 60

Query: 152 GRGEEALLTFYEMHLLGVKGNEFTFPSVLKACSLTRNLELGKQIHGIALVTGFESDVFVA 211
           G  +EA+L FYEMHLLG+K NEF FPSVLKAC++T++L LGKQ+HGI +VTGF+SD FVA
Sbjct: 61  GFCQEAVLAFYEMHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVA 120

Query: 212 NTLVVMYAKCGEFSDSKKLFEEIPERNVVSWNALFSCYVQIDFFSEAINLFREMVSTGLT 271
           N+LV++YAKCG F D++ LF+ IP+R+VVSWNALFSCYV  D   EA++LF +MV +G+ 
Sbjct: 121 NSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIR 180

Query: 272 PNEFSLSTVLNACAGLEHIDSGMEIHGYLIKLGYDSDPFSANALLDMYAKAGCPESAIAV 331
           PNEFSLS+++N C GLE    G +IHGYLIKLGYDSD FSANAL+DMYAK G  E A +V
Sbjct: 181 PNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSV 240

Query: 332 FYEIPKPDIVSWN-----------------------------------AAIAFC------ 391
           F EI KPDIVSWN                                   +A+  C      
Sbjct: 241 FDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALR 300

Query: 392 ---EQVHAISIKSGYQYDGYVANSLLDSYGKGCRLEEAEKVFEECPAEDLVAYTSMITAY 417
               Q+H+  IK     D ++   L+D Y K   +++A  VF+  P  D++A+ ++I+ +
Sbjct: 301 ELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGH 360

[Close]

BLAST of Cp4.1LG09g00990 vs. TrEMBL
Match: A0A103XF42_CYNCS (Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_008503 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 4.8e-101
Identity = 177/280 (63.21%), Postives = 221/280 (78.93%), Query Frame = 1


Query: 71  STLRISSTLPSLCRLPPLSCGMEIHARMIRLGLCTDTGVRNKLINLYSKCQCFPAARKLV 130
           S++  S  L   C+   LS G++IH  +I++GL  D+  RN LINLYSKC+ F  AR+L+
Sbjct: 56  SSISYSKLLSQCCQSKSLSPGLQIHTHLIKIGLANDSKHRNHLINLYSKCRLFGCARRLL 115

Query: 131 MDGTEPDLVSWSALISGYAQNGRGEEALLTFYEMHLLGVKGNEFTFPSVLKACSLTRNLE 190
            +  EPDLV+WS+LISGYAQNG GEEA+L F EMH LG++ NEFTFPSVLKACS+ +++ 
Sbjct: 116 DESPEPDLVAWSSLISGYAQNGLGEEAILAFSEMHSLGIRCNEFTFPSVLKACSIKKDIV 175

Query: 191 LGKQIHGIALVTGFESDVFVANTLVVMYAKCGEFSDSKKLFEEIPERNVVSWNALFSCYV 250
            GKQIHGI +VTGFESDVFVANTLVV+YAKCGEF DS++LF++IP+RN+VSWNALFSCY 
Sbjct: 176 GGKQIHGIVVVTGFESDVFVANTLVVVYAKCGEFLDSRRLFDQIPDRNIVSWNALFSCYT 235

Query: 251 QIDFFSEAINLFREMVSTGLTPNEFSLSTVLNACAGLEHIDSGMEIHGYLIKLGYDSDPF 310
           Q DFF EAI LF++MVS+G+ P+EFSLST++NAC GL  ++ G +IHGYL+K G+ SDPF
Sbjct: 236 QGDFFKEAIYLFQDMVSSGIRPDEFSLSTIINACTGLHDVNQGKKIHGYLMKHGFSSDPF 295

Query: 311 SANALLDMYAKAGCPESAIAVFYEIPKPDIVSWNAAIAFC 351
           S NAL+DMY+K G  E    VF  IP PDIVSWNA IA C
Sbjct: 296 SCNALVDMYSKVGDFEDCKQVFEHIPNPDIVSWNAVIAGC 335

[Close]

BLAST of Cp4.1LG09g00990 vs. TAIR10
Match: AT1G50270.1 (AT1G50270.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 214.9 bits (546), Expect = 9.3e-56
Identity = 125/370 (33.78%), Postives = 196/370 (52.97%), Query Frame = 1


Query: 73  LRISSTLPSLCRLPPL---------SCGMEIHARMIRLGLCTDTGVRNKLINLYSKCQCF 132
           +R +  +PS    PPL         S   + HA +++ GL +D  VRN LI+ YS    F
Sbjct: 95  MRRNGVIPSRHTFPPLLKAVFKLRDSNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLF 154

Query: 133 PAARKLVMDGTEPDLVSWSALISGYAQNGRGEEALLTFYEMHLLGVKGNEFTFPSVLKAC 192
             A +L     + D+V+W+A+I G+ +NG   EA++ F EM   GV  NE T  SVLKA 
Sbjct: 155 DFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAA 214

Query: 193 SLTRNLELGKQIHGIALVTG-FESDVFVANTLVVMYAKCGEFSDSKKLFEEIPERNVVSW 252
               ++  G+ +HG+ L TG  + DVF+ ++LV MY KC  + D++K+F+E+P RNVV+W
Sbjct: 215 GKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTW 274

Query: 253 NALFSCYVQIDFFSEAINLFREMVSTGLTPNEFSLSTVLNACAGLEHIDSGMEIHGYLIK 312
            AL + YVQ   F + + +F EM+ + + PNE +LS+VL+ACA +  +  G  +H Y+IK
Sbjct: 275 TALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIK 334

Query: 313 LGYDSDPFSANALLDMYAKAGCPESAIAVFYEIPKPDIVSWNAAI-AFCEQVHA------ 372
              + +  +   L+D+Y K GC E AI VF  + + ++ +W A I  F    +A      
Sbjct: 335 NSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDL 394

Query: 373 --ISIKSGYQYDGYVANSLLDSYGKGCRLEEAEKVFEEC-------PAEDLVAYTSMITA 417
               + S    +     ++L +   G  +EE  ++F          P  D   Y  M+  
Sbjct: 395 FYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKAD--HYACMVDL 454

[Close]

BLAST of Cp4.1LG09g00990 vs. TAIR10
Match: AT2G33680.1 (AT2G33680.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 204.9 bits (520), Expect = 9.6e-53
Identity = 121/343 (35.28%), Postives = 182/343 (53.06%), Query Frame = 1


Query: 76  SSTLPSLCRLPPLSCGMEIHARMIRLGLCTDTGVRNKLINLYSKCQCFPAARKLVMDGTE 135
           ++ L SL     +  G +IH   I+ GL     + N L+ +YSKC+    A K+     +
Sbjct: 225 TAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGD 284

Query: 136 PDLVSWSALISGYAQNGRGEEALLTFYEMHLLGVKGNEFTFPSVLKACSLTRNLELGKQI 195
            + ++WSA+++GY+QNG   EA+  F  M   G+K +E+T   VL ACS    LE GKQ+
Sbjct: 285 RNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQL 344

Query: 196 HGIALVTGFESDVFVANTLVVMYAKCGEFSDSKKLFEEIPERNVVSWNALFSCYVQIDFF 255
           H   L  GFE  +F    LV MYAK G  +D++K F+ + ER+V  W +L S YVQ    
Sbjct: 345 HSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDN 404

Query: 256 SEAINLFREMVSTGLTPNEFSLSTVLNACAGLEHIDSGMEIHGYLIKLGYDSDPFSANAL 315
            EA+ L+R M + G+ PN+ ++++VL AC+ L  ++ G ++HG+ IK G+  +    +AL
Sbjct: 405 EEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSAL 464

Query: 316 LDMYAKAGCPESAIAVFYEIPKPDIVSWNAAIAFCEQVHAISIKSGYQYDGYVANSLLDS 375
             MY+K G  E    VF   P  D+VSWNA I            SG  ++G         
Sbjct: 465 STMYSKCGSLEDGNLVFRRTPNKDVVSWNAMI------------SGLSHNG--------- 524

Query: 376 YGKGCRLEEAEKVFEECPAE----DLVAYTSMITAYSQYGLGE 415
                + +EA ++FEE  AE    D V + ++I+A S  G  E
Sbjct: 525 -----QGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVE 541

[Close]

BLAST of Cp4.1LG09g00990 vs. TAIR10
Match: AT4G25270.1 (AT4G25270.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 198.0 bits (502), Expect = 1.2e-50
Identity = 115/358 (32.12%), Postives = 195/358 (54.47%), Query Frame = 1


Query: 76  SSTLPSLCRLPPLSCGMEIHARMIRLGLCTDTGVRNKLINLYSKCQCFPAARKLV--MDG 135
           +S L +   L  +  G+ +H  +    L  + G+ +KL+ LY+ C     A ++   M  
Sbjct: 96  ASLLETCYSLRAIDHGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEVAHEVFDRMSK 155

Query: 136 TEPDLVSWSALISGYAQNGRGEEALLTFYEMHLLGVKGNEFTFPSVLKACSLTRNLELGK 195
            +    +W++LISGYA+ G+ E+A+  +++M   GVK + FTFP VLKAC    ++++G+
Sbjct: 156 RDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGE 215

Query: 196 QIHGIALVTGFESDVFVANTLVVMYAKCGEFSDSKKLFEEIPERNVVSWNALFSCYVQID 255
            IH   +  GF  DV+V N LVVMYAKCG+   ++ +F+ IP ++ VSWN++ + Y+   
Sbjct: 216 AIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHG 275

Query: 256 FFSEAINLFREMVSTGLTPNEFSLSTVLNACAGLEHIDSGMEIHGYLIKLGYDSDPFSAN 315
              EA+++FR MV  G+ P++ ++S+VL      +H   G ++HG++I+ G + +   AN
Sbjct: 276 LLHEALDIFRLMVQNGIEPDKVAISSVLARVLSFKH---GRQLHGWVIRRGMEWELSVAN 335

Query: 316 ALLDMYAKAGCPESAIAVFYEIPKPDIVSWNAAIA----------FCEQVHAISIKSGYQ 375
           AL+ +Y+K G    A  +F ++ + D VSWNA I+          + EQ+H  + K    
Sbjct: 336 ALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSKNSNGLKYFEQMHRANAKP--- 395

Query: 376 YDGYVANSLLDSYGKGCRLEEAEKVFEECPAE-----DLVAYTSMITAYSQYGLGEEA 417
            DG    S+L        +E+ E++F     E      +  Y  M+  Y + G+ EEA
Sbjct: 396 -DGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKMEHYACMVNLYGRAGMMEEA 446

[Close]

BLAST of Cp4.1LG09g00990 vs. TAIR10
Match: AT4G33170.1 (AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 197.2 bits (500), Expect = 2.0e-50
Identity = 128/435 (29.43%), Postives = 211/435 (48.51%), Query Frame = 1


Query: 29  AQSCSTQLSNLNGCAPFVLPGASNPSPECCAALGAVQQDCLCSTLRISSTLPSLCRLPPL 88
           A S S  +    G + ++  G  +   +C A +  V+ D  C  +     L +  ++  L
Sbjct: 274 ASSVSEIIFRNKGLSEYLHSGQYSALLKCFADM--VESDVECDQVTFILMLATAVKVDSL 333

Query: 89  SCGMEIHARMIRLGLCTDTGVRNKLINLYSKCQCFPAARKLVMDGTEPDLVSWSALISGY 148
           + G ++H   ++LGL     V N LIN+Y K + F  AR +  + +E DL+SW+++I+G 
Sbjct: 334 ALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGI 393

Query: 149 AQNGRGEEALLTFYEMHLLGVKGNEFTFPSVLKACS-LTRNLELGKQIHGIALVTGFESD 208
           AQNG   EA+  F ++   G+K +++T  SVLKA S L   L L KQ+H  A+     SD
Sbjct: 394 AQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSD 453

Query: 209 VFVANTLVVMYAKCGEFSDSKKLFEEIPERNVVSWNALFSCYVQIDFFSEAINLFREMVS 268
            FV+  L+  Y++     +++ LFE     ++V+WNA+ + Y Q     + + LF  M  
Sbjct: 454 SFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHK 513

Query: 269 TGLTPNEFSLSTVLNACAGLEHIDSGMEIHGYLIKLGYDSDPFSANALLDMYAKAGCPES 328
            G   ++F+L+TV   C  L  I+ G ++H Y IK GYD D + ++ +LDMY K G   +
Sbjct: 514 QGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSA 573

Query: 329 AIAVFYEIPKPDIVSWNAAIAFC------------------------------------- 388
           A   F  IP PD V+W   I+ C                                     
Sbjct: 574 AQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSC 633

Query: 389 -------EQVHAISIKSGYQYDGYVANSLLDSYGKGCRLEEAEKVFEECPAEDLVAYTSM 419
                   Q+HA ++K     D +V  SL+D Y K   +++A  +F+     ++ A+ +M
Sbjct: 634 LTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAM 693

[Close]

BLAST of Cp4.1LG09g00990 vs. TAIR10
Match: AT4G39530.1 (AT4G39530.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 196.8 bits (499), Expect = 2.6e-50
Identity = 115/347 (33.14%), Postives = 181/347 (52.16%), Query Frame = 1


Query: 76  SSTLPSLCRLPPLSCGMEIHARMIRLGLCTDTGVRNKLINLYSKCQCFPAARKLVMDGTE 135
           SS L S   L  L  G ++HA  I+  L  D+ V N LI++Y+KC C   ARK+      
Sbjct: 354 SSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAA 413

Query: 136 PDLVSWSALISGYAQNGRG---EEALLTFYEMHLLGVKGNEFTFPSVLKACSLTRNLELG 195
            D+V ++A+I GY++ G      EAL  F +M    ++ +  TF S+L+A +   +L L 
Sbjct: 414 ADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLS 473

Query: 196 KQIHGIALVTGFESDVFVANTLVVMYAKCGEFSDSKKLFEEIPERNVVSWNALFSCYVQI 255
           KQIHG+    G   D+F  + L+ +Y+ C    DS+ +F+E+  +++V WN++F+ YVQ 
Sbjct: 474 KQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQ 533

Query: 256 DFFSEAINLFREMVSTGLTPNEFSLSTVLNACAGLEHIDSGMEIHGYLIKLGYDSDPFSA 315
               EA+NLF E+  +   P+EF+ + ++ A   L  +  G E H  L+K G + +P+  
Sbjct: 534 SENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYIT 593

Query: 316 NALLDMYAKAGCPESAIAVFYEIPKPDIVSWNAAIAFCEQVHAISIKSGYQYDGYVANSL 375
           NALLDMYAK G PE A   F      D+V WN+ I                       S 
Sbjct: 594 NALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVI-----------------------SS 653

Query: 376 LDSYGKGCR-LEEAEKVFEECPAEDLVAYTSMITAYSQYGLGEEALK 419
             ++G+G + L+  EK+  E    + + +  +++A S  GL E+ LK
Sbjct: 654 YANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLK 677

[Close]

BLAST of Cp4.1LG09g00990 vs. NCBI nr
Match: gi|659077399|ref|XP_008439183.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Cucumis melo])

HSP 1 Score: 476.5 bits (1225), Expect = 4.8e-131
Identity = 252/391 (64.45%), Postives = 288/391 (73.66%), Query Frame = 1


Query: 71  STLRISSTLPSLCRLPPLSCGMEIHARMIRLGLCTDTGVRNKLINLYSKCQCFPAARKLV 130
           S++  S  L        ++ GM IHAR+IRLGLC D G+RN+LINLYSKCQCF  ARKLV
Sbjct: 49  SSISYSKLLLQFTASKDVNSGMAIHARIIRLGLCRDVGLRNRLINLYSKCQCFRVARKLV 108

Query: 131 MDGTEPDLVSWSALISGYAQNGRGEEALLTFYEMHLLGVKGNEFTFPSVLKACSLTRNLE 190
           MD TEPDLVSWSALISGYAQNGRGEEALLT+YEM+LLGVKGNEFTFPSVLK CSLTRNLE
Sbjct: 109 MDSTEPDLVSWSALISGYAQNGRGEEALLTYYEMYLLGVKGNEFTFPSVLKGCSLTRNLE 168

Query: 191 LGKQIHGIALVTGFESDVFVANTLVVMYAKCGEFSDSKKLFEEIPERNVVSWNALFSCYV 250
           LGKQIHG+ALVTGFESD FVANTLVVMYAKCGEF DSKKLFE IPER+VVSWNALFSCYV
Sbjct: 169 LGKQIHGVALVTGFESDEFVANTLVVMYAKCGEFGDSKKLFEAIPERSVVSWNALFSCYV 228

Query: 251 QIDFFSEAINLFREMVSTGLTPNEFSLSTVLNACAGLEHIDSGMEIHGYLIKLGYDSDPF 310
           QIDFF EAINLF+EM+STG++PNEFSLSTVLNACAGLE  + GM+IHG LIKLGY+SDPF
Sbjct: 229 QIDFFGEAINLFQEMISTGISPNEFSLSTVLNACAGLEDENYGMKIHGCLIKLGYESDPF 288

Query: 311 SANALLDMYAKAGCPESAIAVFYEIPKPDIVSWNAAIAFC--EQVHAISIKSGYQYDGY- 370
           SANALLDMYAK+GCPE+AIAVFYEIPKPDIVSWNA IA C   + + +++K   +   Y 
Sbjct: 289 SANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYR 348

Query: 371 VANSL--LDSYGKGCR-------------------LEE--------------------AE 418
           VA S+  L S  K C                    +E                     A 
Sbjct: 349 VAPSMFALSSALKACAAIGLVKLGRQLHSALMKRDMESDSFVGVGLIDMYSKCGLLQDAR 408

[Close]

BLAST of Cp4.1LG09g00990 vs. NCBI nr
Match: gi|778679510|ref|XP_011651139.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Cucumis sativus])

HSP 1 Score: 462.6 bits (1189), Expect = 7.2e-127
Identity = 255/428 (59.58%), Postives = 296/428 (69.16%), Query Frame = 1


Query: 36  LSNL--NGCAPFVLPGASNPSPECCAALGAVQQDCLCSTLRISSTLPSLCRLPPLSCGME 95
           +SNL  N  + F+L  +SNPS                 ++     L        +S GM 
Sbjct: 29  ISNLRPNDVSGFILDSSSNPS-----------------SISYPKLLLQFTASKDVSSGMA 88

Query: 96  IHARMIRLGLCTDTGVRNKLINLYSKCQCFPAARKLVMDGTEPDLVSWSALISGYAQNGR 155
           IHAR+IRLGL    G+RN+L+NLYSKCQCF  ARKLV+D +EPDLVSWSALISGY QNGR
Sbjct: 89  IHARIIRLGLL---GLRNRLVNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGR 148

Query: 156 GEEALLTFYEMHLLGVKGNEFTFPSVLKACSLTRNLELGKQIHGIALVTGFESDVFVANT 215
           GEEALLT+YEM+LLG KGNEFTF SVLK CSLTRNLELGKQIH +ALVTGFESDVFVANT
Sbjct: 149 GEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVTGFESDVFVANT 208

Query: 216 LVVMYAKCGEFSDSKKLFEEIPERNVVSWNALFSCYVQIDFFSEAINLFREMVSTGLTPN 275
           LVVMYAKCGEF DSKKLFE IPERNVVSWNALFSCYVQIDFF EAINLF+EM+STG++PN
Sbjct: 209 LVVMYAKCGEFGDSKKLFEAIPERNVVSWNALFSCYVQIDFFGEAINLFQEMISTGISPN 268

Query: 276 EFSLSTVLNACAGLEHIDSGMEIHGYLIKLGYDSDPFSANALLDMYAKAGCPESAIAVFY 335
           EFSLSTVLNACAGLE  + GM++HGYLIKLGYDSDPFSANALLDMYAK+GCPE+AIAVFY
Sbjct: 269 EFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFY 328

Query: 336 EIPKPDIVSWNAAIAFC--EQVHAISIKSGYQYDGY-VANSL--LDSYGKGCR------- 395
           EIPKPDIVSWNA IA C   + + +++K   +   Y VA S+  L S  K C        
Sbjct: 329 EIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKL 388

Query: 396 ------------LEE--------------------AEKVFEECPAEDLVAYTSMITAYSQ 418
                       +E                     A  VF+  P +D++ + S+I+ YS 
Sbjct: 389 GRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPKKDVIVWNSIISGYSN 436

[Close]

BLAST of Cp4.1LG09g00990 vs. NCBI nr
Match: gi|147805537|emb|CAN74095.1| (hypothetical protein VITISV_023708 [Vitis vinifera])

HSP 1 Score: 410.6 bits (1054), Expect = 3.3e-111
Identity = 213/381 (55.91%), Postives = 261/381 (68.50%), Query Frame = 1


Query: 55  PECCAALGAVQQDCLCST-LRISSTLPSLCRLPPLSCGMEIHARMIRLGLCTDTGVRNKL 114
           P+  A L  + +     T +  S  L   C    L  G++IHA + + GL  D  +RN L
Sbjct: 38  PQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHL 97

Query: 115 INLYSKCQCFPAARKLVMDGTEPDLVSWSALISGYAQNGRGEEALLTFYEMHLLGVKGNE 174
           INLYSKC+ F  ARKLV + +EPDLVSWSALISGYAQNG G  AL+ F+EMHLLGVK NE
Sbjct: 98  INLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNE 157

Query: 175 FTFPSVLKACSLTRNLELGKQIHGIALVTGFESDVFVANTLVVMYAKCGEFSDSKKLFEE 234
           FTF SVLKACS+ ++L +GKQ+HG+ +V+GFE DVFVANTLVVMYAKC EF DSK+LF+E
Sbjct: 158 FTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDE 217

Query: 235 IPERNVVSWNALFSCYVQIDFFSEAINLFREMVSTGLTPNEFSLSTVLNACAGLEHIDSG 294
           IPERNVVSWNALFSCYVQ DF  EA+ LF EMV +G+ PNEFSLS+++NAC GL     G
Sbjct: 218 IPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRG 277

Query: 295 MEIHGYLIKLGYDSDPFSANALLDMYAKAGCPESAIAVFYEIPKPDIVSWNAAIAFC--- 354
             IHGYLIKLGYD DPFSANAL+DMYAK G    AI+VF +I +PDIVSWNA IA C   
Sbjct: 278 KIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLH 337

Query: 355 --------------EQVHAISIKSGYQYDGYVANSLLDSYGKGCRLEEAEKVFEECPAED 414
                          Q+H+  +K   + D +V+  L+D Y K   LE+A   F   P +D
Sbjct: 338 EHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKD 397

Query: 415 LVAYTSMITAYSQYGLGEEAL 418
           L+A+ ++I+ YSQY    EAL
Sbjct: 398 LIAWNAIISGYSQYWEDMEAL 418

[Close]

BLAST of Cp4.1LG09g00990 vs. NCBI nr
Match: gi|359483488|ref|XP_002273710.2| (PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Vitis vinifera])

HSP 1 Score: 401.4 bits (1030), Expect = 2.0e-108
Identity = 214/408 (52.45%), Postives = 262/408 (64.22%), Query Frame = 1


Query: 55  PECCAALGAVQQDCLCST-LRISSTLPSLCRLPPLSCGMEIHARMIRLGLCTDTGVRNKL 114
           P+  A L  + +     T +  S  L   C    L  G++IHA + + GL  D  +RN L
Sbjct: 38  PQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHL 97

Query: 115 INLYSKCQCFPAARKLVMDGTEPDLVSWSALISGYAQNGRGEEALLTFYEMHLLGVKGNE 174
           INLYSKC+ F  ARKLV + +EPDLVSWSALISGYAQNG G  AL+ F+EMHLLGVK NE
Sbjct: 98  INLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNE 157

Query: 175 FTFPSVLKACSLTRNLELGKQIHGIALVTGFESDVFVANTLVVMYAKCGEFSDSKKLFEE 234
           FTF SVLKACS+ ++L +GKQ+HG+ +V+GFE DVFVANTLVVMYAKC EF DSK+LF+E
Sbjct: 158 FTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDE 217

Query: 235 IPERNVVSWNALFSCYVQIDFFSEAINLFREMVSTGLTPNEFSLSTVLNACAGLEHIDSG 294
           IPERNVVSWNALFSCYVQIDF  EA+ LF EMV +G+ PNEFSLS+++NAC GL     G
Sbjct: 218 IPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRG 277

Query: 295 MEIHGYLIKLGYDSDPFSANALLDMYAKAGCPESAIAVFYEIPKPDIVSWNAAIAFC--- 354
             IHGYLIKLGYD DPFSANAL+DMYAK G    AI+VF +I +PDIVSWNA IA C   
Sbjct: 278 KIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLH 337

Query: 355 -----------------------------------------EQVHAISIKSGYQYDGYVA 414
                                                     Q+H+  +K   + D +V+
Sbjct: 338 EHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVS 397

Query: 415 NSLLDSYGKGCRLEEAEKVFEECPAEDLVAYTSMITAYSQYGLGEEAL 418
             L+D Y K   LE+A   F   P +DL+A+ ++I+ YSQY    EAL
Sbjct: 398 VGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEAL 445

[Close]

BLAST of Cp4.1LG09g00990 vs. NCBI nr
Match: gi|645237289|ref|XP_008225136.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Prunus mume])

HSP 1 Score: 393.3 bits (1009), Expect = 5.4e-106
Identity = 209/402 (51.99%), Postives = 264/402 (65.67%), Query Frame = 1


Query: 61  LGAVQQDCLCSTLRISSTLPSLCRLPP-LSCGMEIHARMIRLGLCTDTGVRNKLINLYSK 120
           L +VQ+     T    S L S C     +  GME+HA +IR G   D  +RN LINLYSK
Sbjct: 58  LSSVQKGNFSPTSISYSKLLSQCAASKSVGVGMEVHAHIIRCGCSGDQSLRNHLINLYSK 117

Query: 121 CQCFPAARKLVMDGTEPDLVSWSALISGYAQNGRGEEALLTFYEMHLLGVKGNEFTFPSV 180
           C+ F  ARKLV + TEPDLVSWSALISGYAQNG G+EAL  F EMH LGVK NEFTFPSV
Sbjct: 118 CRFFRHARKLVDESTEPDLVSWSALISGYAQNGLGKEALSAFREMHSLGVKCNEFTFPSV 177

Query: 181 LKACSLTRNLELGKQIHGIALVTGFESDVFVANTLVVMYAKCGEFSDSKKLFEEIPERNV 240
           LKACS+TR+  LGKQ+HGIAL+TGFESD FVANTLVVMYAKCGEF DS++LF+ IPERNV
Sbjct: 178 LKACSITRDSVLGKQVHGIALLTGFESDEFVANTLVVMYAKCGEFGDSRRLFDAIPERNV 237

Query: 241 VSWNALFSCYVQIDFFSEAINLFREMVSTGLTPNEFSLSTVLNACAGLEHIDSGMEIHGY 300
           VSWNALFSCYVQ D + EA++LF+EM+ +G+ PNE+SLS+++NAC GL     G +IHGY
Sbjct: 238 VSWNALFSCYVQSDSYGEAMDLFQEMILSGVRPNEYSLSSIINACTGLGDGSRGRKIHGY 297

Query: 301 LIKLGYDSDPFSANALLDMYAKAGCPESAIAVFYEIPKPDIVSWNAAIAFC--------- 360
           ++KLGY+SD FSANAL+DMYAK    E AI+VF +I +PDIVSWNA IA C         
Sbjct: 298 MVKLGYESDSFSANALVDMYAKVKGLEDAISVFEKIAQPDIVSWNAVIAGCVLHEYHDWA 357

Query: 361 -----------------------------------EQVHAISIKSGYQYDGYVANSLLDS 418
                                               Q+H+  +K   + D +V   L+D 
Sbjct: 358 LQFFGQMNGSGICPNMFTLSSALKACAGLGFEKLGRQLHSFLLKMDTESDSFVNVGLIDM 417

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g00990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPR75_ARATH	1.6e-54	33.78	Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN...	[more]
PP181_ARATH	1.7e-51	35.28	Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN...	[more]
PP337_ARATH	2.1e-49	32.12	Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidop...	[more]
PP347_ARATH	3.6e-49	29.43	Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN...	[more]
PP357_ARATH	4.6e-49	33.14	Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cp4.1LG09g00990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8M4_CUCSA	5.0e-127	59.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180420 PE=4 SV=1	[more]
A5B2K7_VITVI	2.3e-111	55.91	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023708 PE=4 SV=1	[more]
A0A061GGD5_THECC	3.0e-103	53.35	Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_0298...	[more]
B9H2R5_POPTR	1.9e-102	52.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04740g PE=4 SV=2	[more]
A0A103XF42_CYNCS	4.8e-101	63.21	Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus ...	[more]

BLAST of Cp4.1LG09g00990 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50270.1	9.3e-56	33.78	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G33680.1	9.6e-53	35.28	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G25270.1	1.2e-50	32.12	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G33170.1	2.0e-50	29.43	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G39530.1	2.6e-50	33.14	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Cp4.1LG09g00990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077399\|ref\|XP_008439183.1\|	4.8e-131	64.45	PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Cucumis m...	[more]
gi\|778679510\|ref\|XP_011651139.1\|	7.2e-127	59.58	PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Cucumis s...	[more]
gi\|147805537\|emb\|CAN74095.1\|	3.3e-111	55.91	hypothetical protein VITISV_023708 [Vitis vinifera]	[more]
gi\|359483488\|ref\|XP_002273710.2\|	2.0e-108	52.45	PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Vitis vin...	[more]
gi\|645237289\|ref\|XP_008225136.1\|	5.4e-106	51.99	PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Prunus mu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g00990.1	Cp4.1LG09g00990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 311..335 score: 0.003coord: 370..391 score: 0.0023coord: 398..418 score: 0.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 238..285 score: 5.8E-12coord: 136..183 score: 5.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 369..391 score: 5.2E-4coord: 139..172 score: 8.6E-7coord: 240..274 score: 3.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 238..272 score: 11.871coord: 172..206 score: 6.16coord: 137..171 score: 10.665coord: 308..342 score: 8.868coord: 273..307 score: 6.982coord: 207..237 score: 8.517coord: 365..399 score: 8
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 123..333 score: 3.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 17..73 score: 6.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 32..90 score: 8.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 29..91 score: 4.84
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 31..75 score: 5.
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 61..418 score: 2.0E
None	No IPR available	PANTHER	PTHR24015:SF811	SUBFAMILY NOT NAMED	coord: 61..418 score: 2.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g00990	Cucsa.250880	Cucumber (Gy14) v1	cgycpeB0668
Cp4.1LG09g00990	CmaCh18G012320	Cucurbita maxima (Rimu)	cmacpeB415
Cp4.1LG09g00990	CmoCh18G012550	Cucurbita moschata (Rifu)	cmocpeB376
Cp4.1LG09g00990	Cla006201	Watermelon (97103) v1	cpewmB032
Cp4.1LG09g00990	Csa3G180390	Cucumber (Chinese Long) v2	cpecuB039
Cp4.1LG09g00990	MELO3C006883	Melon (DHL92) v3.5.1	cpemeB043
Cp4.1LG09g00990	CSPI03G16700	Wild cucumber (PI 183967)	cpecpiB034
Cp4.1LG09g00990	Lsi05G012500	Bottle gourd (USVL1VR-Ls)	cpelsiB035
Cp4.1LG09g00990	MELO3C006886.2	Melon (DHL92) v3.6.1	cpemedB050
Cp4.1LG09g00990	CsaV3_3G016910	Cucumber (Chinese Long) v3	cpecucB0039
Cp4.1LG09g00990	Bhi01G000985	Wax gourd	cpewgoB0025
Cp4.1LG09g00990	CsGy3G016820	Cucumber (Gy14) v2	cgybcpeB287
Cp4.1LG09g00990	Carg22085	Silver-seed gourd	carcpeB1038

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g00990	Cucurbita pepo (Zucchini)	cpecpeB023
Cp4.1LG09g00990	Cucurbita pepo (Zucchini)	cpecpeB057
Cp4.1LG09g00990	Cucurbita pepo (Zucchini)	cpecpeB058
Cp4.1LG09g00990	Cucumber (Gy14) v1	cgycpeB0788
Cp4.1LG09g00990	Cucurbita maxima (Rimu)	cmacpeB339
Cp4.1LG09g00990	Cucurbita maxima (Rimu)	cmacpeB598
Cp4.1LG09g00990	Cucurbita moschata (Rifu)	cmocpeB303
Cp4.1LG09g00990	Cucurbita moschata (Rifu)	cmocpeB546
Cp4.1LG09g00990	Wild cucumber (PI 183967)	cpecpiB040
Cp4.1LG09g00990	Cucumber (Chinese Long) v2	cpecuB046
Cp4.1LG09g00990	Watermelon (Charleston Gray)	cpewcgB023
Cp4.1LG09g00990	Watermelon (Charleston Gray)	cpewcgB046
Cp4.1LG09g00990	Watermelon (97103) v1	cpewmB036
Cp4.1LG09g00990	Melon (DHL92) v3.5.1	cpemeB020
Cp4.1LG09g00990	Cucumber (Gy14) v2	cgybcpeB584
Cp4.1LG09g00990	Melon (DHL92) v3.6.1	cpemedB024
Cp4.1LG09g00990	Silver-seed gourd	carcpeB0994
Cp4.1LG09g00990	Silver-seed gourd	carcpeB1267
Cp4.1LG09g00990	Cucumber (Chinese Long) v3	cpecucB0045