CmaCh12G010700 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G010700
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPeptidoglycan-binding LysM domain protein
LocationCma_Chr12 : 8463624 .. 8466494 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCTCTCTCTCTCTCTCTCTAAATGGGGTGCTGTTGCGACGAAGATGACGACGTTGAGATCCTGAGGCATCTTCATCCCTCACCGACCGTTCAGTCTCCGCCGCAGCAGCAGCCTACGCTACCGGGTTCTTCCACTGCCGTACTGTCTCCGATGAACTCTCACTTCTTCGCCCTCTCCTGCCGCGACATCCTTCGCCTCATCTTTGAGAAGCTTTCCATCCCCGACTTGGCTCGTTCCAGCTGCGTTTCCCGTCTCTGGAACTCCGTTGCTTCCGATCAGGAAATTGTTTCCGGTGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTAATAGGGAAGCCGAGCTCCGGGAGCTTCTGGAGAGATAATTGCCTTGGAAAGTTTGCGATCTCTCATCGGATTCTCCGCGGCGATAGCTTGGCTAGTCTTGCCGTTAAGTATTCGGTTCAGGTATGCGCTTCGAAAGCTGTTTAATTCATATGAAATTGACTTGAAACAGGAGTAGGACGAGTATAATTTTTATGGAGTTCTTTAGTTTTGAGGAGTTGCGATCATCAATTTTCTTTGATTGTACTTTCCATCTGGCTGGAGTTTAATCTTGTTCGTCTGAAGAACAAGATTGTCAGACGGTTTTATCGCTGTTCAAACTTCAAAAGTCCTCTTACTGAGTCCTTTATTTGTTGAAGGCGAAACCAGGCTAACTGAAAGTAAGAAAATTCGATTGTAGTGAACATTTTGAACATTCACTATTCTGTTAGGGATGAATGATTTATTGTAGCAATGTAGCTTATAGTTGTTCAGTTTCTTGAACATTGATCTTGAAGAATCACTCGTTCTCTGATCATTAATTGAAATCTGTCTTATCTTCCACAACATTACATAGACTTAATTGAAGATTTGATTAGTATTTGATACTCTGTAGCTTATGTTCCTTAAACTTGAATTCCTTGTAAAATATCTATTAAGAAGGAAGATCATGTTGAATTGTTAAAATTCAACTCTTTTCTATGACTATGGACTACGATATATTGTTGAAATCTCTAGTCGTCTGTGTTAGACAAACACGACTCTCCACAACGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGGGTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGAGAGTACTATTTGATTATAAACCCATGACCATTCCCTAAATTAGCTGACGTGGGATTTTCATCAATCCAATACCTCCCCTCGAACAAAGTGCGCCTCCCCTTAATTGAGTTTCGACTCCTTTTTCTTTTGGAGTCTTAGTCATTTTTTACTATGCCTTCGAGGAGGCTCGACTCCTTTTCTTTTGGAGTCCTTTGTTTGACATTTGAGGATTTACCAATCTATTGGCACAACTAAGTTTTAGGTCATGGCTTTGATACCATGTTTGACGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATAGATAGAGTATTCTTTGATTATAAATCCATGATCATTCTCTAAATTAGCCGATGTGGGACTTTCATCATCCAACAGTCTCTTCTGTCTTTCACCTTAGTACATGGTTTACAACAATGAAGAACGCATTTGTTGTTGTAGTTTGTAGTTTTTTCCCCAGCTCCCTAATCCTTGTAAATTGTAAAATATCAATTTAGAAGGATCAAGTATAATTGTTGAGATCAACCTTTTTGATATTGTTCTCGATGGCTATGGACTCTGGTGTAATTTATTTCACAAATATACTGTTCTTGATGGTTATGAACTTTCTTGTATTGATTTCGCAAACGTATTGTTCTTGATGGTTATAGACTTCGGTGTGTCGATTTCGTAAATGTATTGTTCTTAATGGCTACCGACTTTGGTGTGTCGATTTGGTAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCAATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACTGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACCGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTATGGACCTTGTTATTTTGATCTTGTAAACACACTGTTCTTGTAGGTCATAGACATAAAACGTCTAAACAACATGATGAGCGACCATGGCATATACTCAAGAGAAAGAATGCTAATCCCCATTGGCAATCCCAATATACTTATTAACAGTATATGCTACATCGAGATGGACGCTATCGCGAAACGGGAAGTTGCAACGTTGTATTTGGATGGCATCCCCACTACCCATCATTTGTATGGTAAGGAGACAGATGATCAGGGTATGTCCTCTGTTCAAGTGAAGAAACGAGTACTCCATTCATTGAGTCGGAGCATGATGGTCGACGATGAAACCGCTCAATATTACTTATCCATTTCCGATGGCGATCCTCGAGCTGCTCTCACAGAATTTGCCGAAGACATCAGGTGGGAGAGGCATATGGGCATGGCCTAGTTTCAGAAATACAGATTGTTGCTCGGAGTGAAGATCACCCGTAAACTAAAAACGCTACCGTGCGTGGAATACGGTTGCGTTTGACTGGAACGTTTTATCTTCTCCATCTCCACAAAGAAGGATCAGCCAAAGAATTCATTTTCAGCCCCATTTCACTAATTGGTATGTATATCTTGTTGCTCTATTTCGCAACTGTATGAATCATTACCAGTAATATAATAGTGTGAATATTAGTATTGTTCTCCACTGAGTATGAATGCTTATAAGTTACTAAATTCAAAGCCTTTTATATGAC

mRNA sequence

CTCTCTCTCTCTCTCTCTCTCTAAATGGGGTGCTGTTGCGACGAAGATGACGACGTTGAGATCCTGAGGCATCTTCATCCCTCACCGACCGTTCAGTCTCCGCCGCAGCAGCAGCCTACGCTACCGGGTTCTTCCACTGCCGTACTGTCTCCGATGAACTCTCACTTCTTCGCCCTCTCCTGCCGCGACATCCTTCGCCTCATCTTTGAGAAGCTTTCCATCCCCGACTTGGCTCGTTCCAGCTGCGTTTCCCGTCTCTGGAACTCCGTTGCTTCCGATCAGGAAATTGTTTCCGGTGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTAATAGGGAAGCCGAGCTCCGGGAGCTTCTGGAGAGATAATTGCCTTGGAAAGTTTGCGATCTCTCATCGGATTCTCCGCGGCGATAGCTTGGCTAGTCTTGCCGTTAAGTATTCGGTTCAGGTCATAGACATAAAACGTCTAAACAACATGATGAGCGACCATGGCATATACTCAAGAGAAAGAATGCTAATCCCCATTGGCAATCCCAATATACTTATTAACAGTATATGCTACATCGAGATGGACGCTATCGCGAAACGGGAAGTTGCAACGTTGTATTTGGATGGCATCCCCACTACCCATCATTTGTATGGTAAGGAGACAGATGATCAGGGTATGTCCTCTGTTCAAGTGAAGAAACGAGTACTCCATTCATTGAGTCGGAGCATGATGGTCGACGATGAAACCGCTCAATATTACTTATCCATTTCCGATGGCGATCCTCGAGCTGCTCTCACAGAATTTGCCGAAGACATCAGGTGGGAGAGGCATATGGGCATGGCCTAGTTTCAGAAATACAGATTGTTGCTCGGAGTGAAGATCACCCGTAAACTAAAAACGCTACCGTGCGTGGAATACGGTTGCGTTTGACTGGAACGTTTTATCTTCTCCATCTCCACAAAGAAGGATCAGCCAAAGAATTCATTTTCAGCCCCATTTCACTAATTGGTATGTATATCTTGTTGCTCTATTTCGCAACTGTATGAATCATTACCAGTAATATAATAGTGTGAATATTAGTATTGTTCTCCACTGAGTATGAATGCTTATAAGTTACTAAATTCAAAGCCTTTTATATGAC

Coding sequence (CDS)

ATGGGGTGCTGTTGCGACGAAGATGACGACGTTGAGATCCTGAGGCATCTTCATCCCTCACCGACCGTTCAGTCTCCGCCGCAGCAGCAGCCTACGCTACCGGGTTCTTCCACTGCCGTACTGTCTCCGATGAACTCTCACTTCTTCGCCCTCTCCTGCCGCGACATCCTTCGCCTCATCTTTGAGAAGCTTTCCATCCCCGACTTGGCTCGTTCCAGCTGCGTTTCCCGTCTCTGGAACTCCGTTGCTTCCGATCAGGAAATTGTTTCCGGTGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTAATAGGGAAGCCGAGCTCCGGGAGCTTCTGGAGAGATAATTGCCTTGGAAAGTTTGCGATCTCTCATCGGATTCTCCGCGGCGATAGCTTGGCTAGTCTTGCCGTTAAGTATTCGGTTCAGGTCATAGACATAAAACGTCTAAACAACATGATGAGCGACCATGGCATATACTCAAGAGAAAGAATGCTAATCCCCATTGGCAATCCCAATATACTTATTAACAGTATATGCTACATCGAGATGGACGCTATCGCGAAACGGGAAGTTGCAACGTTGTATTTGGATGGCATCCCCACTACCCATCATTTGTATGGTAAGGAGACAGATGATCAGGGTATGTCCTCTGTTCAAGTGAAGAAACGAGTACTCCATTCATTGAGTCGGAGCATGATGGTCGACGATGAAACCGCTCAATATTACTTATCCATTTCCGATGGCGATCCTCGAGCTGCTCTCACAGAATTTGCCGAAGACATCAGGTGGGAGAGGCATATGGGCATGGCCTAG

Protein sequence

MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPGSSTAVLSPMNSHFFALSCRDILRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNILINSICYIEMDAIAKREVATLYLDGIPTTHHLYGKETDDQGMSSVQVKKRVLHSLSRSMMVDDETAQYYLSISDGDPRAALTEFAEDIRWERHMGMA
Homology
[Close]
BLAST of CmaCh12G010700 vs. Swiss-Prot
Match: FB60_ARATH (F-box protein At1g55000 OS=Arabidopsis thaliana GN=At1g55000 PE=1 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.9e-75
Identity = 134/220 (60.91%), Postives = 174/220 (79.09%), Query Frame = 1 

Query: 50  ALSCRDILRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSG 109
           AL CRD L +IF+KL++ DLAR+SCV ++WNSVA++ ++V  AF APW++K+++G+P+S 
Sbjct: 2   ALYCRDTLIIIFQKLTVADLARASCVCKVWNSVATEDDLVVSAFTAPWRIKELVGRPASV 61

Query: 110 SFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIG 169
           SFWRDN + KFAISHRI RGDS+ SLAVKY+VQV+DIKRLNNMMSDHGIYSR+R+LIPI 
Sbjct: 62  SFWRDNGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPIS 121

Query: 170 NPNILINSICYIEMDAIAKREVATLYLDGIPTTHHLYGKETDDQGMSSVQVKKRVLHSLS 229
           NP IL N+ CY+E+D  AKREVA LYL+G P         T+ Q   S   K+R++ SL 
Sbjct: 122 NPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPV-PGTNQQSNLSADGKRRLIESLR 181

Query: 230 RSMMVDDETAQYYLSISDGDPRAALTEFAEDIRWERHMGM 270
           RSM VDD TA YYL+I++GDPR+AL+EF+ D+RWER  G+
Sbjct: 182 RSMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAGL 220

[Close]
BLAST of CmaCh12G010700 vs. TrEMBL
Match: A0A0A0LFS6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022840 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 2.0e-132
Identity = 237/270 (87.78%), Postives = 249/270 (92.22%), Query Frame = 1 

Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPGSSTAVLSPMNSHFFALSCRDILRLI 60
           MGCCCD+DDDVEILRHL+PSP + SPP Q P     S A+LSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPAD-HSAAILSPMNSHFFALSCRDILRLI 60

Query: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120
           FE LSIPDLARSSCV RLW+SVASDQEIVSGAFKAPWKVKDV+GKPSS SFWRDNCLGKF
Sbjct: 61  FENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNILINSICY 180
           AISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRER+LIPIGNPN+LINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICY 180

Query: 181 IEMDAIAKREVATLYLDGIPTTHHLYGKETDDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240
           IEMDAIAKREVA LYLDGIP T HLYGK T +QGMSSVQV KRVLHSLSRSMMVDDETAQ
Sbjct: 181 IEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 271
           YYLSIS+G+PRAALTEFAEDIRWERHM +A
Sbjct: 241 YYLSISNGNPRAALTEFAEDIRWERHMSIA 269

[Close]
BLAST of CmaCh12G010700 vs. TrEMBL
Match: W9SEY0_9ROSA (F-box protein OS=Morus notabilis GN=L484_000452 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 7.3e-95
Identity = 176/274 (64.23%), Postives = 217/274 (79.20%), Query Frame = 1 

Query: 1   MGCCCDEDDDVEILRHLHPSPTVQS----PPQQQPTLPGSSTAVLSPMNSHFFALSCRDI 60
           MGCCCDE+DD +IL+HL+PS + Q+    P     +  G  + V+SPMNSHF AL+CRD 
Sbjct: 1   MGCCCDEEDD-DILKHLNPSISTQTLTLDPCSSSTSFSGDCSDVISPMNSHFSALTCRDT 60

Query: 61  LRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNC 120
           LR IFEKL +PDLAR+SCV R+WNSVASD+EI+S AF+APWK+K V+G P SGSFWRDN 
Sbjct: 61  LRAIFEKLPVPDLARASCVCRVWNSVASDKEILSRAFRAPWKLKRVVGDPVSGSFWRDNG 120

Query: 121 LGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNILIN 180
           LGKFAISHRI+RGDS+ASLAVKYSVQV+DIKRLNNMMS+HGIYSRER+LIP+ + N+LI 
Sbjct: 121 LGKFAISHRIVRGDSVASLAVKYSVQVMDIKRLNNMMSEHGIYSRERLLIPLSDQNVLIG 180

Query: 181 SICYIEMDAIAKREVATLYLDGIPTTHHLYGKETDDQGMSSVQVKKRVLHSLSRSMMVDD 240
             CY+E+DA A+REVA LYLDG              Q  +S+Q +KRV+HSL RSM VDD
Sbjct: 181 RTCYVELDAYARREVAVLYLDGAGPDRKAESASL-LQRTTSLQARKRVIHSLRRSMQVDD 240

Query: 241 ETAQYYLSISDGDPRAALTEFAEDIRWERHMGMA 271
            TA+YYLSIS+GDPRAA +EF+ D+RWER +G++
Sbjct: 241 GTAEYYLSISNGDPRAAFSEFSGDLRWEREVGLS 272

[Close]
BLAST of CmaCh12G010700 vs. TrEMBL
Match: M5WCC8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010076mg PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.2e-94
Identity = 173/273 (63.37%), Postives = 212/273 (77.66%), Query Frame = 1 

Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPGSSTAVLSPMNSHFFALSCRDILRLI 60
           MGCC DE++D +IL  L+P+ T +        +   S + +SPMNSHF AL+CRD LRLI
Sbjct: 1   MGCCGDEENDDDILNPLNPTTTTE--------ILDFSDSTISPMNSHFSALTCRDTLRLI 60

Query: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120
           FEKL IPDLARSSCV R+WNSVASDQEIV+ AFKAPW +K +IGKP+SG+FWRDN LGKF
Sbjct: 61  FEKLPIPDLARSSCVCRVWNSVASDQEIVTRAFKAPWNLKHIIGKPASGNFWRDNSLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNILINSICY 180
           AISHRI+RGDS+ASLAVKYSVQV+DIKRLNN MS+HGIYSRER+LIPI NP +L+ + CY
Sbjct: 121 AISHRIVRGDSIASLAVKYSVQVMDIKRLNNTMSEHGIYSRERLLIPISNPEMLLQATCY 180

Query: 181 IEMDAIAKREVATLYLDGIPTTHHLY---GKETDDQGMSSVQVKKRVLHSLSRSMMVDDE 240
           +E+D  AKREVA LYL+G P  H         T     + +Q KKRV+ SL RSM +DD 
Sbjct: 181 VEVDTCAKREVAVLYLEGGPELHKTTSNGSSSTSSCSATDLQSKKRVIESLRRSMQIDDA 240

Query: 241 TAQYYLSISDGDPRAALTEFAEDIRWERHMGMA 271
           TA YYL+I+DGDPRAAL++F++D+RWE H+G A
Sbjct: 241 TAHYYLTIADGDPRAALSQFSQDLRWENHLGFA 265

[Close]
BLAST of CmaCh12G010700 vs. TrEMBL
Match: A0A061F3R2_THECC (Peptidoglycan-binding LysM domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_026548 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 5.8e-92
Identity = 177/272 (65.07%), Postives = 209/272 (76.84%), Query Frame = 1 

Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPGSSTAVLSPMNSHFFALSCRDILRLI 60
           M CCCD++DD   L       T        PT+   STA +SPMNSHF AL+CRD LRLI
Sbjct: 1   MSCCCDQNDDESAL-------TTPLSSSSSPTVT-DSTATISPMNSHFSALTCRDTLRLI 60

Query: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120
           FEKLS+ DLAR+SCV + WN+VASD E+V  AFKAPWK+ +V+GKPSSGSFWRDN +GKF
Sbjct: 61  FEKLSLTDLARASCVCKAWNAVASDDEMVVEAFKAPWKLLEVVGKPSSGSFWRDNGIGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNILINSICY 180
           AISHRILRG+S+ASLAVKYSVQV+DIKRLNNMMSDHGIYSRER+LIPI NP++LIN  CY
Sbjct: 121 AISHRILRGESVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISNPDLLINGTCY 180

Query: 181 IEMDAIAKREVATLYLDGIPTTH--HLYGKETDDQGMSSVQVKKRVLHSLSRSMMVDDET 240
           IE+D  AKREVA LYLDG P      L  + T D+G      K+RV+ SL RSM VDD T
Sbjct: 181 IELDTYAKREVAVLYLDGKPDRKPGTLLKRVTSDRG------KRRVIDSLKRSMQVDDGT 240

Query: 241 AQYYLSISDGDPRAALTEFAEDIRWERHMGMA 271
           AQYYLSIS+GDPRAAL++F+ D+ WER +G+A
Sbjct: 241 AQYYLSISNGDPRAALSQFSSDLSWERQIGLA 258

[Close]
BLAST of CmaCh12G010700 vs. TrEMBL
Match: F6HZ09_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0128g00770 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.9e-91
Identity = 174/274 (63.50%), Postives = 217/274 (79.20%), Query Frame = 1 

Query: 1   MGCCCDEDDDVEILRHLHP--SPTVQSPPQQQPTLPGSSTAVLSPMNSHFFALSCRDILR 60
           MGCC DE++  E L+HL P  S T+      Q +  G S AV+S MNSHF AL+C+D+LR
Sbjct: 1   MGCCGDEEE--EFLKHLMPNFSETLTLGSTFQASTSGDSDAVISAMNSHFSALTCQDVLR 60

Query: 61  LIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLG 120
            IFE+L + DLAR+SCV R+WN VASD+ I   AF+APWK+KDV+G PSSGSFWRD+ LG
Sbjct: 61  GIFERLPVADLARASCVCRVWNLVASDRGIQVRAFRAPWKLKDVVGIPSSGSFWRDDSLG 120

Query: 121 KFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNILINSI 180
           KFAISHR++RGDS+ASLAVKYSVQV+DIKRLNNMMSDHGIYSRER+LIP+  P+ILIN+I
Sbjct: 121 KFAISHRLVRGDSVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPVSKPDILINAI 180

Query: 181 CYIEMDAIAKREVATLYLDGIP--TTHHLYGKETDDQGMSSVQVKKRVLHSLSRSMMVDD 240
           CYIE+D+ AKREVA LYL+G P    + L  K + +QG      ++RV+ SL RSM +DD
Sbjct: 181 CYIELDSYAKREVAVLYLEGGPDKKLNSLLNKVSSEQG------RRRVIESLKRSMQIDD 240

Query: 241 ETAQYYLSISDGDPRAALTEFAEDIRWERHMGMA 271
            TAQYYLSIS+GDPRAA++EF+ED+RWERH G++
Sbjct: 241 GTAQYYLSISNGDPRAAISEFSEDLRWERHAGLS 266

[Close]
BLAST of CmaCh12G010700 vs. TAIR10
Match: AT1G55000.1 (AT1G55000.1 peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 283.9 bits (725), Expect = 1.0e-76
Identity = 134/220 (60.91%), Postives = 174/220 (79.09%), Query Frame = 1 

Query: 50  ALSCRDILRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSG 109
           AL CRD L +IF+KL++ DLAR+SCV ++WNSVA++ ++V  AF APW++K+++G+P+S 
Sbjct: 2   ALYCRDTLIIIFQKLTVADLARASCVCKVWNSVATEDDLVVSAFTAPWRIKELVGRPASV 61

Query: 110 SFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIG 169
           SFWRDN + KFAISHRI RGDS+ SLAVKY+VQV+DIKRLNNMMSDHGIYSR+R+LIPI 
Sbjct: 62  SFWRDNGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPIS 121

Query: 170 NPNILINSICYIEMDAIAKREVATLYLDGIPTTHHLYGKETDDQGMSSVQVKKRVLHSLS 229
           NP IL N+ CY+E+D  AKREVA LYL+G P         T+ Q   S   K+R++ SL 
Sbjct: 122 NPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPV-PGTNQQSNLSADGKRRLIESLR 181

Query: 230 RSMMVDDETAQYYLSISDGDPRAALTEFAEDIRWERHMGM 270
           RSM VDD TA YYL+I++GDPR+AL+EF+ D+RWER  G+
Sbjct: 182 RSMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAGL 220

[Close]
BLAST of CmaCh12G010700 vs. TAIR10
Match: AT5G08200.1 (AT5G08200.1 peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 51.2 bits (121), Expect = 1.1e-06
Identity = 25/65 (38.46%), Postives = 43/65 (66.15%), Query Frame = 1 

Query: 106 PSSGS--FWRDNCLGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRER 165
           PSS S  F   N   +  I HRI + D+LA +A+KY V+V D+K++NN+++D  +++ + 
Sbjct: 60  PSSSSPPFHGSNSPDRGYIEHRISKFDTLAGVAIKYGVEVADVKKMNNLVTDLQMFALKS 119

Query: 166 MLIPI 169
           + IP+
Sbjct: 120 LQIPL 124

[Close]
BLAST of CmaCh12G010700 vs. TAIR10
Match: AT5G23130.1 (AT5G23130.1 Peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 48.1 bits (113), Expect = 9.7e-06
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 1 

Query: 106 PSSGSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERML 165
           PSS S     C G   I HR+ + D+LA +A+KY V+V DI +LN +++D  +++ E + 
Sbjct: 60  PSSAS----TCAGY--IEHRVSKFDTLAGIAIKYGVEVADITKLNGLVTDLQMFALESLR 116

Query: 166 IPI 169
           IP+
Sbjct: 120 IPL 116

[Close]
BLAST of CmaCh12G010700 vs. NCBI nr
Match: gi|659070321|ref|XP_008454537.1| (PREDICTED: F-box protein At1g55000 [Cucumis melo])

HSP 1 Score: 480.7 bits (1236), Expect = 1.7e-132
Identity = 238/270 (88.15%), Postives = 250/270 (92.59%), Query Frame = 1 

Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPGSSTAVLSPMNSHFFALSCRDILRLI 60
           MGCCCD+DDDVEILRHL+PSP V SPP Q P     STA+LSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPPVHSPPLQPPPAD-HSTAILSPMNSHFFALSCRDILRLI 60

Query: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120
           FE LSIPDLARSSCV RLW+SVASDQEIV+GAFKAPWKVKDV+GKPSS SFWRDNCLGKF
Sbjct: 61  FEHLSIPDLARSSCVCRLWHSVASDQEIVAGAFKAPWKVKDVVGKPSSWSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNILINSICY 180
           AISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRER+LIPIGNPNILINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVATLYLDGIPTTHHLYGKETDDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240
           IEMDAIAKREVA LYLDGIP T HLYGK T +QGMSSVQV KR+LHSLSRSMMVDDETAQ
Sbjct: 181 IEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRLLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 271
           YYLSIS+G+PRAALTEFAEDIRWERHM +A
Sbjct: 241 YYLSISNGNPRAALTEFAEDIRWERHMSIA 269

[Close]
BLAST of CmaCh12G010700 vs. NCBI nr
Match: gi|449442811|ref|XP_004139174.1| (PREDICTED: F-box protein At1g55000 [Cucumis sativus])

HSP 1 Score: 479.9 bits (1234), Expect = 2.8e-132
Identity = 237/270 (87.78%), Postives = 249/270 (92.22%), Query Frame = 1 

Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPGSSTAVLSPMNSHFFALSCRDILRLI 60
           MGCCCD+DDDVEILRHL+PSP + SPP Q P     S A+LSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPAD-HSAAILSPMNSHFFALSCRDILRLI 60

Query: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120
           FE LSIPDLARSSCV RLW+SVASDQEIVSGAFKAPWKVKDV+GKPSS SFWRDNCLGKF
Sbjct: 61  FENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNILINSICY 180
           AISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRER+LIPIGNPN+LINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICY 180

Query: 181 IEMDAIAKREVATLYLDGIPTTHHLYGKETDDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240
           IEMDAIAKREVA LYLDGIP T HLYGK T +QGMSSVQV KRVLHSLSRSMMVDDETAQ
Sbjct: 181 IEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 271
           YYLSIS+G+PRAALTEFAEDIRWERHM +A
Sbjct: 241 YYLSISNGNPRAALTEFAEDIRWERHMSIA 269

[Close]
BLAST of CmaCh12G010700 vs. NCBI nr
Match: gi|1009117267|ref|XP_015875224.1| (PREDICTED: F-box protein At1g55000-like [Ziziphus jujuba])

HSP 1 Score: 357.8 bits (917), Expect = 1.6e-95
Identity = 182/280 (65.00%), Postives = 222/280 (79.29%), Query Frame = 1 

Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPGSSTA-------VLSPMNSHFFALSC 60
           MGCC DED+D +IL+HL+PS + +S     P L  SS++       V+SPMNSHF  L+C
Sbjct: 1   MGCCGDEDED-DILKHLNPSISTES---LTPNLHHSSSSDSDVSGDVISPMNSHFSGLTC 60

Query: 61  RDILRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWR 120
           RD LR+IFEKL IPDLAR+SCV R WNSVASD++I++ AFKAPWK+K+VIG+P SGSFWR
Sbjct: 61  RDTLRIIFEKLPIPDLARASCVCRTWNSVASDRDILTKAFKAPWKLKEVIGEPLSGSFWR 120

Query: 121 DNCLGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNI 180
           DN +GKFAISHRI+RGD++A LAVKYSVQV+DIKRLNNMMS+HGIYSRER+LIPI NP I
Sbjct: 121 DNTIGKFAISHRIVRGDTVARLAVKYSVQVMDIKRLNNMMSEHGIYSRERLLIPISNPEI 180

Query: 181 LINSICYIEMDAIAKREVATLYLDG----IPTTHHLYGKETDDQGMSSVQVKKRVLHSLS 240
           LI  ICY+E+D  AKREVA LYLDG    + TT  +  + T D GM      KR++HSL 
Sbjct: 181 LIGGICYVELDTYAKREVAVLYLDGSGPDLKTTSSMIRRTTSDLGM------KRIIHSLK 240

Query: 241 RSMMVDDETAQYYLSISDGDPRAALTEFAEDIRWERHMGM 270
           RSM VDD TAQYYLSIS+GDPRAAL+EF+ED+RWE+ +G+
Sbjct: 241 RSMHVDDGTAQYYLSISNGDPRAALSEFSEDLRWEKQVGL 270

[Close]
BLAST of CmaCh12G010700 vs. NCBI nr
Match: gi|1009117244|ref|XP_015875212.1| (PREDICTED: F-box protein At1g55000 [Ziziphus jujuba])

HSP 1 Score: 355.9 bits (912), Expect = 6.2e-95
Identity = 181/280 (64.64%), Postives = 222/280 (79.29%), Query Frame = 1 

Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPGSSTA-------VLSPMNSHFFALSC 60
           MGCC DED+D +IL+HL+PS + +S     P L  SS++       V+SPMNSHF  L+C
Sbjct: 1   MGCCGDEDED-DILKHLNPSISTES---LTPNLHHSSSSDSDVSGDVISPMNSHFSGLTC 60

Query: 61  RDILRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWR 120
           RD LR+IFEKL IPDLAR+SCV R W+SVASD++I++ AFKAPWK+K+VIG+P SGSFWR
Sbjct: 61  RDTLRIIFEKLPIPDLARASCVCRTWSSVASDRDILTKAFKAPWKLKEVIGEPLSGSFWR 120

Query: 121 DNCLGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNI 180
           DN +GKFAISHRI+RGD++A LAVKYSVQV+DIKRLNNMMS+HGIYSRER+LIPI NP I
Sbjct: 121 DNTIGKFAISHRIVRGDTVARLAVKYSVQVMDIKRLNNMMSEHGIYSRERLLIPISNPEI 180

Query: 181 LINSICYIEMDAIAKREVATLYLDG----IPTTHHLYGKETDDQGMSSVQVKKRVLHSLS 240
           LI  ICY+E+D  AKREVA LYLDG    + TT  +  + T D GM      KR++HSL 
Sbjct: 181 LIGGICYVELDTYAKREVAVLYLDGSGPDLKTTSSMIRRTTSDLGM------KRIIHSLK 240

Query: 241 RSMMVDDETAQYYLSISDGDPRAALTEFAEDIRWERHMGM 270
           RSM VDD TAQYYLSIS+GDPRAAL+EF+ED+RWE+ +G+
Sbjct: 241 RSMHVDDGTAQYYLSISNGDPRAALSEFSEDLRWEKQVGL 270

[Close]
BLAST of CmaCh12G010700 vs. NCBI nr
Match: gi|703146302|ref|XP_010108761.1| (F-box protein [Morus notabilis])

HSP 1 Score: 355.1 bits (910), Expect = 1.1e-94
Identity = 176/274 (64.23%), Postives = 217/274 (79.20%), Query Frame = 1 

Query: 1   MGCCCDEDDDVEILRHLHPSPTVQS----PPQQQPTLPGSSTAVLSPMNSHFFALSCRDI 60
           MGCCCDE+DD +IL+HL+PS + Q+    P     +  G  + V+SPMNSHF AL+CRD 
Sbjct: 1   MGCCCDEEDD-DILKHLNPSISTQTLTLDPCSSSTSFSGDCSDVISPMNSHFSALTCRDT 60

Query: 61  LRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNC 120
           LR IFEKL +PDLAR+SCV R+WNSVASD+EI+S AF+APWK+K V+G P SGSFWRDN 
Sbjct: 61  LRAIFEKLPVPDLARASCVCRVWNSVASDKEILSRAFRAPWKLKRVVGDPVSGSFWRDNG 120

Query: 121 LGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNILIN 180
           LGKFAISHRI+RGDS+ASLAVKYSVQV+DIKRLNNMMS+HGIYSRER+LIP+ + N+LI 
Sbjct: 121 LGKFAISHRIVRGDSVASLAVKYSVQVMDIKRLNNMMSEHGIYSRERLLIPLSDQNVLIG 180

Query: 181 SICYIEMDAIAKREVATLYLDGIPTTHHLYGKETDDQGMSSVQVKKRVLHSLSRSMMVDD 240
             CY+E+DA A+REVA LYLDG              Q  +S+Q +KRV+HSL RSM VDD
Sbjct: 181 RTCYVELDAYARREVAVLYLDGAGPDRKAESASL-LQRTTSLQARKRVIHSLRRSMQVDD 240

Query: 241 ETAQYYLSISDGDPRAALTEFAEDIRWERHMGMA 271
            TA+YYLSIS+GDPRAA +EF+ D+RWER +G++
Sbjct: 241 GTAEYYLSISNGDPRAAFSEFSGDLRWEREVGLS 272

The following BLAST results are available for this feature:
BLAST of CmaCh12G010700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FB60_ARATH1.9e-7560.91F-box protein At1g55000 OS=Arabidopsis thaliana GN=At1g55000 PE=1 SV=1[more]
BLAST of CmaCh12G010700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFS6_CUCSA2.0e-13287.78Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022840 PE=4 SV=1[more]
W9SEY0_9ROSA7.3e-9564.23F-box protein OS=Morus notabilis GN=L484_000452 PE=4 SV=1[more]
M5WCC8_PRUPE1.2e-9463.37Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010076mg PE=4 SV=1[more]
A0A061F3R2_THECC5.8e-9265.07Peptidoglycan-binding LysM domain-containing protein isoform 1 OS=Theobroma caca... [more]
F6HZ09_VITVI2.9e-9163.50Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0128g00770 PE=4 SV=... [more]
BLAST of CmaCh12G010700 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G55000.11.0e-7660.91 peptidoglycan-binding LysM domain-containing protein[more]
AT5G08200.11.1e-0638.46 peptidoglycan-binding LysM domain-containing protein[more]
AT5G23130.19.7e-0639.68 Peptidoglycan-binding LysM domain-containing protein[more]
BLAST of CmaCh12G010700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659070321|ref|XP_008454537.1|1.7e-13288.15PREDICTED: F-box protein At1g55000 [Cucumis melo][more]
gi|449442811|ref|XP_004139174.1|2.8e-13287.78PREDICTED: F-box protein At1g55000 [Cucumis sativus][more]
gi|1009117267|ref|XP_015875224.1|1.6e-9565.00PREDICTED: F-box protein At1g55000-like [Ziziphus jujuba][more]
gi|1009117244|ref|XP_015875212.1|6.2e-9564.64PREDICTED: F-box protein At1g55000 [Ziziphus jujuba][more]
gi|703146302|ref|XP_010108761.1|1.1e-9464.23F-box protein [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR018392LysM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G010700.1CmaCh12G010700.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF00646F-boxcoord: 55..86
score: 3.
IPR001810F-box domainunknownSSF81383F-box domaincoord: 55..114
score: 1.2
IPR018392LysM domainGENE3DG3DSA:3.10.350.10coord: 122..164
score: 2.
IPR018392LysM domainPFAMPF01476LysMcoord: 124..166
score: 1.
IPR018392LysM domainunknownSSF54106LysM domaincoord: 123..167
score: 7.5
NoneNo IPR availableGENE3DG3DSA:1.20.1280.50coord: 54..87
score: 5.
NoneNo IPR availablePANTHERPTHR20932LOC443603 PROTEIN-RELATEDcoord: 1..265
score: 2.2E
NoneNo IPR availablePANTHERPTHR20932:SF9SUBFAMILY NOT NAMEDcoord: 1..265
score: 2.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G010700Cucsa.091400Cucumber (Gy14) v1cgycmaB0179
CmaCh12G010700Cla019895Watermelon (97103) v1cmawmB170
CmaCh12G010700Csa2G022840Cucumber (Chinese Long) v2cmacuB173
CmaCh12G010700MELO3C004254Melon (DHL92) v3.5.1cmameB172
CmaCh12G010700ClCG02G015760Watermelon (Charleston Gray)cmawcgB156
CmaCh12G010700CSPI02G04010Wild cucumber (PI 183967)cmacpiB174
CmaCh12G010700Lsi11G005520Bottle gourd (USVL1VR-Ls)cmalsiB159
CmaCh12G010700Cp4.1LG07g09110Cucurbita pepo (Zucchini)cmacpeB203
CmaCh12G010700MELO3C004253.2Melon (DHL92) v3.6.1cmamedB187
CmaCh12G010700CsaV3_2G005340Cucumber (Chinese Long) v3cmacucB0202
CmaCh12G010700Cla97C02G041490Watermelon (97103) v2cmawmbB175
CmaCh12G010700CsGy2G004110Cucumber (Gy14) v2cgybcmaB178
CmaCh12G010700Carg17541Silver-seed gourdcarcmaB1000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G010700Cucurbita maxima (Rimu)cmacmaB190
CmaCh12G010700Cucumber (Gy14) v1cgycmaB0520
CmaCh12G010700Cucurbita moschata (Rifu)cmacmoB177
CmaCh12G010700Cucurbita moschata (Rifu)cmacmoB190
CmaCh12G010700Wild cucumber (PI 183967)cmacpiB160
CmaCh12G010700Cucumber (Chinese Long) v2cmacuB159
CmaCh12G010700Melon (DHL92) v3.5.1cmameB151
CmaCh12G010700Watermelon (Charleston Gray)cmawcgB159
CmaCh12G010700Watermelon (97103) v1cmawmB158
CmaCh12G010700Cucurbita pepo (Zucchini)cmacpeB171
CmaCh12G010700Bottle gourd (USVL1VR-Ls)cmalsiB178
CmaCh12G010700Cucumber (Gy14) v2cgybcmaB054
CmaCh12G010700Melon (DHL92) v3.6.1cmamedB166
CmaCh12G010700Cucumber (Chinese Long) v3cmacucB0184
CmaCh12G010700Watermelon (97103) v2cmawmbB180
CmaCh12G010700Wax gourdcmawgoB0236