CsGy2G004110 (gene) Cucumber (Gy14) v2

NameCsGy2G004110
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionF-box protein At1g55000-like
LocationChr2 : 2765660 .. 2768233 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTAATAAATATTTCCAATCCCACCCTTTATCAATCTACAAAAACACAACCATTCATTTCTTTCTCTCTCTCTCTAAAATGGGATGCTGTTGCGATCAAGACGACGACGTTGAGATCCTCAGACACCTCAATCCCTCCCCGGCCCTTCACTCTCCACCGCCGCAACCTCCACCCGCGGATCATTCCGCTGCCATATTGTCTCCCATGAACTCTCACTTTTTCGCCCTCTCCTGCCGCGATATCCTCCGCCTCATCTTCGAGAACCTTTCCATCCCCGACTTGGCTCGTTCCAGCTGCGTTTGCCGTCTATGGCACTCCGTTGCTTCCGATCAGGAAATTGTCTCCGGAGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTGGTCGGGAAGCCGAGCTCCTGGAGCTTCTGGAGAGATAATTGCCTTGGGAAGTTTGCAATTTCTCATCGAATTCTCCGCGGCGATAGCTTGGCTAGTCTAGCCGTTAAGTATTCTGTTCAGGTATGGGCTTCGAATATTATTATTGTCTTATTTGAGAAAGTGACTGGAAATTAGGGTAAGAAACAGTAGTAGAATTTCTGAGAATCAATTCAATTTTAAGAAGTCGGAATCATCTATTTTCCTTGTTTTCTCTGAAAAACACGACGGTGCGACAGATTTATGGCTGTTCAAATTTTATAACTTCTCTTGCTGAATTTTTGTTTTATGTTGGATATGGAAACATATGAATTGAAAGTAAGGGAGCTAGAGTACAGAGAACACTTTGAACTTTCAGTACTCCTGTTGTAGCTATATGGTTTATTGCAGCAATGTAGCTTATAGATACTTGATTTCTTTAACATTGATCTTGAAGGCACTGCTGCTTTGAAGTCCTAACATTAATTGAAATTTGTTAACCTTTGAAAAAATCTGTACTTCATACTCTGTTGTTTGTGTTCCCAACTCTTGAGTTCTTGTAAAGTTCAATTAAGGACATTCATGTTCCACTGTTGAGATGAACCCTTTCTTGTGGCTATAAACTTTGATACATTATTGAAATCACCAGCAGTTTGAATCACAGTGGAAACTAATGTATATATATAATGAAATAAACTACTTTCGTTGAGGGGAAAAAATGAAAGAACTAAAAGAATCGAAGCCCAGGAACCTCTCCAAATAAAACGAACCAATCAAGAAAAATAATGCCTCTAGAATAGTTAAGAAAGAGCTTCGATGACGAACCCCAAAGAATGAATCTTAGAGCTCAAAAGTCACATCACTAGGTTTCCTTGCCATCTCTCTGAACACTTTGTTCATTTTCTCCCTAAAATATCAATTAGGAAGGATCAAGTATAAATGTTGAAATCAGCTCTTTCTGGTGGCCATGGACTTGGGTGTGTTGTTGAAATCATCATAGTTTTAACAATAGTTGAAACTTGTATATCTTTCACAACATTAACTTGCCGCAAAAATGAAGAGTTAAATAGTTTTTTTCCCACTCCCAAGCACTTGTAATAAATCAATTAGGAAGGGTCAAGTTCAATTTGAGGTCATTCCCTTTTTTTTTTATGACTATGGACTTTGGTGTATTAATCTTGTTTACATATCTTGTTCGTGTAGGTTATATACATACAATGTCTAAATAACATGACGTAGTACTGTTGCATTCTTGAGATGAATGCTTTTTGATGGTTATGGACGTTGGTGTATTAATTTTGTGTGTTTATATATACATCTTTCTTGTAGGTTACAGACATAAAACGTCTGAACAACATGATGAGTGACCATGGCATATACTCAAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATGCTCATTAACAGTATATGTTACATCGAGATGGATGCTATTGCAAAACGAGAAGTTGCAGTGTTATATTTGGACGGAATCCCCATGACCCAACATTTGTATGGTAAGGTGACATCCGAACAAGGTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCATTGAGTCGAAGCATGATGGTTGACGACAAGACCGCTCAATATTACTTATCCATTTCCAATGGCAATCCTCGAGCTGCTCTTACAGAATTTGCCGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAATTCTCACAAAGGCAGATTGTTGCTTCGGGTAAAGATAGTGTGTAAATTATTCAGATGCTTTCTACTGGAATCTGTTGTTATTCCTCTCCATATCCACAAAGAATGATTAGATCAAGAATCCGTATCCAACACCAATTCACTCCTTGGCTCATTGGCTGATTGGTATGTACATCTACATCTACATTCTTACTGTCATTTGAATGAGGCATTTTGCCTCGTTTCATTATTGTGTATATATATATATGATATGATGTATTCTCATATTTACTTGAAGATGATGATGCTCTATTGTGTTTAGCTGTAAATCTAATGTTCTTGGAAGTTAAAAACATGTCTATTTAAGCAAAAAACATTGTAAACAAACTTCTTTTCCCCTAGAATTTAATGTCCATAAAGATTGAATTAGAGGTGTAGTGAGTCTGTTTGTGTTACTTTTTGTTTGCTATCAAGATTTAGTCTTTG

mRNA sequence

CTTAATAAATATTTCCAATCCCACCCTTTATCAATCTACAAAAACACAACCATTCATTTCTTTCTCTCTCTCTCTAAAATGGGATGCTGTTGCGATCAAGACGACGACGTTGAGATCCTCAGACACCTCAATCCCTCCCCGGCCCTTCACTCTCCACCGCCGCAACCTCCACCCGCGGATCATTCCGCTGCCATATTGTCTCCCATGAACTCTCACTTTTTCGCCCTCTCCTGCCGCGATATCCTCCGCCTCATCTTCGAGAACCTTTCCATCCCCGACTTGGCTCGTTCCAGCTGCGTTTGCCGTCTATGGCACTCCGTTGCTTCCGATCAGGAAATTGTCTCCGGAGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTGGTCGGGAAGCCGAGCTCCTGGAGCTTCTGGAGAGATAATTGCCTTGGGAAGTTTGCAATTTCTCATCGAATTCTCCGCGGCGATAGCTTGGCTAGTCTAGCCGTTAAGTATTCTGTTCAGGTTACAGACATAAAACGTCTGAACAACATGATGAGTGACCATGGCATATACTCAAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATGCTCATTAACAGTATATGTTACATCGAGATGGATGCTATTGCAAAACGAGAAGTTGCAGTGTTATATTTGGACGGAATCCCCATGACCCAACATTTGTATGGTAAGGTGACATCCGAACAAGGTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCATTGAGTCGAAGCATGATGGTTGACGACAAGACCGCTCAATATTACTTATCCATTTCCAATGGCAATCCTCGAGCTGCTCTTACAGAATTTGCCGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAATTCTCACAAAGGCAGATTGTTGCTTCGGGTAAAGATAGTGTGTAAATTATTCAGATGCTTTCTACTGGAATCTGTTGTTATTCCTCTCCATATCCACAAAGAATGATTAGATCAAGAATCCGTATCCAACACCAATTCACTCCTTGGCTCATTGGCTGATTGGTATGTACATCTACATCTACATTCTTACTGTCATTTGAATGAGGCATTTTGCCTCGTTTCATTATTGTGTATATATATATATGATATGATGTATTCTCATATTTACTTGAAGATGATGATGCTCTATTGTGTTTAGCTGTAAATCTAATGTTCTTGGAAGTTAAAAACATGTCTATTTAAGCAAAAAACATTGTAAACAAACTTCTTTTCCCCTAGAATTTAATGTCCATAAAGATTGAATTAGAGGTGTAGTGAGTCTGTTTGTGTTACTTTTTGTTTGCTATCAAGATTTAGTCTTTG

Coding sequence (CDS)

ATGGGATGCTGTTGCGATCAAGACGACGACGTTGAGATCCTCAGACACCTCAATCCCTCCCCGGCCCTTCACTCTCCACCGCCGCAACCTCCACCCGCGGATCATTCCGCTGCCATATTGTCTCCCATGAACTCTCACTTTTTCGCCCTCTCCTGCCGCGATATCCTCCGCCTCATCTTCGAGAACCTTTCCATCCCCGACTTGGCTCGTTCCAGCTGCGTTTGCCGTCTATGGCACTCCGTTGCTTCCGATCAGGAAATTGTCTCCGGAGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTGGTCGGGAAGCCGAGCTCCTGGAGCTTCTGGAGAGATAATTGCCTTGGGAAGTTTGCAATTTCTCATCGAATTCTCCGCGGCGATAGCTTGGCTAGTCTAGCCGTTAAGTATTCTGTTCAGGTTACAGACATAAAACGTCTGAACAACATGATGAGTGACCATGGCATATACTCAAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATGCTCATTAACAGTATATGTTACATCGAGATGGATGCTATTGCAAAACGAGAAGTTGCAGTGTTATATTTGGACGGAATCCCCATGACCCAACATTTGTATGGTAAGGTGACATCCGAACAAGGTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCATTGAGTCGAAGCATGATGGTTGACGACAAGACCGCTCAATATTACTTATCCATTTCCAATGGCAATCCTCGAGCTGCTCTTACAGAATTTGCCGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAA

Protein sequence

MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPADHSAAILSPMNSHFFALSCRDILRLIFENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYIEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQYYLSISNGNPRAALTEFAEDIRWERHMSIA
BLAST of CsGy2G004110 vs. NCBI nr
Match: XP_004139174.1 (PREDICTED: F-box protein At1g55000 [Cucumis sativus] >KGN60915.1 hypothetical protein Csa_2G022840 [Cucumis sativus])

HSP 1 Score: 541.6 bits (1394), Expect = 1.5e-150
Identity = 268/269 (99.63%), Postives = 269/269 (100.00%), Query Frame = 0

Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF 60
           MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA
Sbjct: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI
Sbjct: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQY 240
           EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDD+TAQY
Sbjct: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQY 240

Query: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 270
           YLSISNGNPRAALTEFAEDIRWERHMSIA
Sbjct: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 269

BLAST of CsGy2G004110 vs. NCBI nr
Match: XP_022150720.1 (F-box protein At1g55000 [Momordica charantia])

HSP 1 Score: 489.2 bits (1258), Expect = 9.0e-135
Identity = 240/269 (89.22%), Postives = 252/269 (93.68%), Query Frame = 0

Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF 60
           MGCCCDQDDDVEILRHLNP+ A+HSP      AD S A+LSPMNSHFFALSCRDILRLIF
Sbjct: 1   MGCCCDQDDDVEILRHLNPAIAVHSPATLPPEADSSTAVLSPMNSHFFALSCRDILRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           E LSIPDLARSSCVCRLW SVASD EIV+GAFKAPWK+KDV+GKPSS SFWRDNCLGKFA
Sbjct: 61  EKLSIPDLARSSCVCRLWQSVASDHEIVAGAFKAPWKLKDVIGKPSSGSFWRDNCLGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICYI
Sbjct: 121 ISHRILRGDSLASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQY 240
           EMDAIAKREVAVLYLDGIP T HLYGKVT EQGMSSVQVNK+VLHSLSRSMMVDD+TA+Y
Sbjct: 181 EMDAIAKREVAVLYLDGIPTTHHLYGKVTCEQGMSSVQVNKQVLHSLSRSMMVDDETARY 240

Query: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 270
           YLSIS+G+PRAALTEFAEDIRWERHMSIA
Sbjct: 241 YLSISHGDPRAALTEFAEDIRWERHMSIA 269

BLAST of CsGy2G004110 vs. NCBI nr
Match: XP_022937590.1 (F-box protein At1g55000 [Cucurbita moschata])

HSP 1 Score: 480.3 bits (1235), Expect = 4.2e-132
Identity = 237/270 (87.78%), Postives = 250/270 (92.59%), Query Frame = 0

Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPP-PQXXXADHSAAILSPMNSHFFALSCRDILRLI 60
           MGCCCD+DDDVEILRHL+PSP + SPP  Q    D S A+LSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60

Query: 61  FENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKF 120
           FE LSIPDLARSSCV RLW+SVASDQEIVSGAFKAPWKVKDV+GKPSS SFWRDNCLGKF
Sbjct: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICY 180
           AISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQ 240
           IEMDAIAKREVA LYLDGIP T HLYGK T++QGMSSVQV KRVLHSLSRSMMVDD+TAQ
Sbjct: 181 IEMDAIAKREVATLYLDGIPTTHHLYGKETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISNGNPRAALTEFAEDIRWERHMSIA 270
           YYLSIS+G+PRAALTEFAEDIRWERHM +A
Sbjct: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 270

BLAST of CsGy2G004110 vs. NCBI nr
Match: XP_022965884.1 (F-box protein At1g55000 [Cucurbita maxima])

HSP 1 Score: 476.5 bits (1225), Expect = 6.1e-131
Identity = 235/270 (87.04%), Postives = 248/270 (91.85%), Query Frame = 0

Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPP-PQXXXADHSAAILSPMNSHFFALSCRDILRLI 60
           MGCCCD+DDDVEILRHL+PSP + SPP  Q      S A+LSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPGSSTAVLSPMNSHFFALSCRDILRLI 60

Query: 61  FENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKF 120
           FE LSIPDLARSSCV RLW+SVASDQEIVSGAFKAPWKVKDV+GKPSS SFWRDNCLGKF
Sbjct: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICY 180
           AISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRER+LIPIGNPN+LINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQ 240
           IEMDAIAKREVA LYLDGIP T HLYGK T +QGMSSVQV KRVLHSLSRSMMVDD+TAQ
Sbjct: 181 IEMDAIAKREVATLYLDGIPTTHHLYGKETDDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISNGNPRAALTEFAEDIRWERHMSIA 270
           YYLSIS+G+PRAALTEFAEDIRWERHM +A
Sbjct: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 270

BLAST of CsGy2G004110 vs. NCBI nr
Match: XP_023537183.1 (F-box protein At1g55000 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 476.5 bits (1225), Expect = 6.1e-131
Identity = 236/274 (86.13%), Postives = 248/274 (90.51%), Query Frame = 0

Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPP-----PQXXXADHSAAILSPMNSHFFALSCRDI 60
           MGCCCD+DDDVEILRHL+PSP + SPP      Q    D S A+LSPMNSHFFALSCRDI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQLQQQPTLPDSSTAVLSPMNSHFFALSCRDI 60

Query: 61  LRLIFENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNC 120
           LRLIFE LSIPDLARSSCV RLW+SVASDQEIVSGAFKAPWKVKDV+GKPSS SFWRDNC
Sbjct: 61  LRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNC 120

Query: 121 LGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLIN 180
           LGKFAISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIPIGNPN+LIN
Sbjct: 121 LGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILIN 180

Query: 181 SICYIEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDD 240
           SICYIEMDAIAKREVA LYLDGIP T HLYGK T + GMSSVQV KRVLHSLSRSMMVDD
Sbjct: 181 SICYIEMDAIAKREVATLYLDGIPTTHHLYGKETDDHGMSSVQVKKRVLHSLSRSMMVDD 240

Query: 241 KTAQYYLSISNGNPRAALTEFAEDIRWERHMSIA 270
           +TAQYYLSIS+G+PRAALTEFAEDIRWERHM +A
Sbjct: 241 ETAQYYLSISDGDPRAALTEFAEDIRWERHMGMA 274

BLAST of CsGy2G004110 vs. TAIR10
Match: AT1G55000.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 278.5 bits (711), Expect = 4.4e-75
Identity = 132/220 (60.00%), Postives = 173/220 (78.64%), Query Frame = 0

Query: 49  ALSCRDILRLIFENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSW 108
           AL CRD L +IF+ L++ DLAR+SCVC++W+SVA++ ++V  AF APW++K++VG+P+S 
Sbjct: 2   ALYCRDTLIIIFQKLTVADLARASCVCKVWNSVATEDDLVVSAFTAPWRIKELVGRPASV 61

Query: 109 SFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIG 168
           SFWRDN + KFAISHRI RGDS+ SLAVKY+VQV DIKRLNNMMSDHGIYSR+RLLIPI 
Sbjct: 62  SFWRDNGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPIS 121

Query: 169 NPNMLINSICYIEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLS 228
           NP +L N+ CY+E+D  AKREVAVLYL+G P  +      T++Q   S    +R++ SL 
Sbjct: 122 NPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPV-PGTNQQSNLSADGKRRLIESLR 181

Query: 229 RSMMVDDKTAQYYLSISNGNPRAALTEFAEDIRWERHMSI 269
           RSM VDD TA YYL+I+ G+PR+AL+EF+ D+RWER   +
Sbjct: 182 RSMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAGL 220

BLAST of CsGy2G004110 vs. TAIR10
Match: AT5G08200.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 49.7 bits (117), Expect = 3.3e-06
Identity = 20/47 (42.55%), Postives = 36/47 (76.60%), Query Frame = 0

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPI 168
           I HRI + D+LA +A+KY V+V D+K++NN+++D  +++ + L IP+
Sbjct: 78  IEHRISKFDTLAGVAIKYGVEVADVKKMNNLVTDLQMFALKSLQIPL 124

BLAST of CsGy2G004110 vs. TAIR10
Match: AT5G23130.1 (Peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-05
Identity = 20/47 (42.55%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPI 168
           I HR+ + D+LA +A+KY V+V DI +LN +++D  +++ E L IP+
Sbjct: 70  IEHRVSKFDTLAGIAIKYGVEVADITKLNGLVTDLQMFALESLRIPL 116

BLAST of CsGy2G004110 vs. Swiss-Prot
Match: sp|Q9FZ32|FB60_ARATH (F-box protein At1g55000 OS=Arabidopsis thaliana OX=3702 GN=At1g55000 PE=1 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 7.9e-74
Identity = 132/220 (60.00%), Postives = 173/220 (78.64%), Query Frame = 0

Query: 49  ALSCRDILRLIFENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSW 108
           AL CRD L +IF+ L++ DLAR+SCVC++W+SVA++ ++V  AF APW++K++VG+P+S 
Sbjct: 2   ALYCRDTLIIIFQKLTVADLARASCVCKVWNSVATEDDLVVSAFTAPWRIKELVGRPASV 61

Query: 109 SFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIG 168
           SFWRDN + KFAISHRI RGDS+ SLAVKY+VQV DIKRLNNMMSDHGIYSR+RLLIPI 
Sbjct: 62  SFWRDNGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPIS 121

Query: 169 NPNMLINSICYIEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLS 228
           NP +L N+ CY+E+D  AKREVAVLYL+G P  +      T++Q   S    +R++ SL 
Sbjct: 122 NPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPV-PGTNQQSNLSADGKRRLIESLR 181

Query: 229 RSMMVDDKTAQYYLSISNGNPRAALTEFAEDIRWERHMSI 269
           RSM VDD TA YYL+I+ G+PR+AL+EF+ D+RWER   +
Sbjct: 182 RSMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAGL 220

BLAST of CsGy2G004110 vs. Swiss-Prot
Match: sp|Q6DEF4|LYSM2_DANRE (LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Danio rerio OX=7955 GN=lysmd2 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 6.6e-04
Identity = 21/52 (40.38%), Postives = 33/52 (63.46%), Query Frame = 0

Query: 116 LGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPI 168
           LG+  I HR+  G++L  +A+KY V +  IKR+N + S+  I+ R  L IP+
Sbjct: 60  LGEKYIEHRVTDGETLQGIALKYGVTMEQIKRVNKLFSNDCIFLRNTLSIPV 111

BLAST of CsGy2G004110 vs. Swiss-Prot
Match: sp|Q7Z3D4|LYSM3_HUMAN (LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Homo sapiens OX=9606 GN=LYSMD3 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 6.6e-04
Identity = 21/67 (31.34%), Postives = 38/67 (56.72%), Query Frame = 0

Query: 112 RDNCLGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPN 171
           RD       ++  I  GD+L ++A++Y   V DIKR+NN++SD   ++   + IP+   +
Sbjct: 56  RDRLDDIIVLTKDIQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFS 115

Query: 172 MLINSIC 179
            L  ++C
Sbjct: 116 SLTETLC 122

BLAST of CsGy2G004110 vs. TrEMBL
Match: tr|A0A0A0LFS6|A0A0A0LFS6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G022840 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 1.0e-150
Identity = 268/269 (99.63%), Postives = 269/269 (100.00%), Query Frame = 0

Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF 60
           MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA
Sbjct: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI
Sbjct: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQY 240
           EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDD+TAQY
Sbjct: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQY 240

Query: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 270
           YLSISNGNPRAALTEFAEDIRWERHMSIA
Sbjct: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 269

BLAST of CsGy2G004110 vs. TrEMBL
Match: tr|A0A1S3BZK8|A0A1S3BZK8_CUCME (Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103494917 PE=3 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 6.2e-116
Identity = 209/218 (95.87%), Postives = 213/218 (97.71%), Query Frame = 0

Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF 60
           MGCCCDQDDDVEILRHLNPSP +HSPP  XXX DHS AILSPMNSHFFALSCRDILRLIF
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPPVHSPPXXXXXXDHSTAILSPMNSHFFALSCRDILRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           E+LSIPDLARSSCVCRLWHSVASDQEIV+GAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA
Sbjct: 61  EHLSIPDLARSSCVCRLWHSVASDQEIVAGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICYI
Sbjct: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQ 219
           EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQ
Sbjct: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQ 218

BLAST of CsGy2G004110 vs. TrEMBL
Match: tr|A0A2P5CFM8|A0A2P5CFM8_9ROSA (F-box domain LysM domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_286610 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 3.0e-94
Identity = 178/270 (65.93%), Postives = 213/270 (78.89%), Query Frame = 0

Query: 1   MGCCCDQDDDVEILRHLNPSPALHS--PPPQXXXADHSAAILSPMNSHFFALSCRDILRL 60
           MGCCCD+DDD EIL+HLNP+  + S         +  S  ++SPMNSHF AL+ RD+LR+
Sbjct: 1   MGCCCDEDDD-EILKHLNPTIPIQSQFQTLTLDPSSSSGDVISPMNSHFSALTSRDLLRV 60

Query: 61  IFENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGK 120
           IF+ L IPDLARSSCVCRLW+SVASD+EI++ AFKAPWK+  VVG+P S SFWRDN LGK
Sbjct: 61  IFQKLPIPDLARSSCVCRLWNSVASDKEILTRAFKAPWKLAHVVGEPLSGSFWRDNNLGK 120

Query: 121 FAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSIC 180
           FAISHRI+RGDS+ASLAVKYSVQV DIKRLNNMMS+HGIYSRERLLIP+ +PN+L+   C
Sbjct: 121 FAISHRIVRGDSVASLAVKYSVQVMDIKRLNNMMSEHGIYSRERLLIPVSDPNILVGGTC 180

Query: 181 YIEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTA 240
           Y+E+DA AKREVAVLYLDG   +Q     +   Q  SS Q  KRV+HSL RSM VDD TA
Sbjct: 181 YVELDAHAKREVAVLYLDGAGPSQKTRSLL---QRRSSEQAKKRVIHSLKRSMQVDDGTA 240

Query: 241 QYYLSISNGNPRAALTEFAEDIRWERHMSI 269
           +YY SISNG+PRAA +EF+ED+RWER   +
Sbjct: 241 EYYFSISNGDPRAAFSEFSEDLRWEREAGL 266

BLAST of CsGy2G004110 vs. TrEMBL
Match: tr|A0A2P5DT00|A0A2P5DT00_PARAD (F-box domain LysM domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_034650 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 3.7e-92
Identity = 176/272 (64.71%), Postives = 213/272 (78.31%), Query Frame = 0

Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAA---ILSPMNSHFFALSCRDILR 60
           MGCCCD+DDD EIL+HLNP+    S   Q    D S++   ++SPMNSHF AL+ RD+LR
Sbjct: 1   MGCCCDEDDD-EILKHLNPTIPTQS-QSQTLTLDPSSSSGDVISPMNSHFSALTSRDLLR 60

Query: 61  LIFENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLG 120
           +IF+ L I DLARSSCVCRLW+SVASD+EI++ AFKAPWK+  VVG+P S SFWRDN LG
Sbjct: 61  VIFQKLPILDLARSSCVCRLWNSVASDKEILTRAFKAPWKLAHVVGEPLSGSFWRDNNLG 120

Query: 121 KFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSI 180
           KFAISHRI+RGDS ASLAVKYSVQV DIKRLNNMMS+HGIYSRERLLIP+ +PN+L+   
Sbjct: 121 KFAISHRIVRGDSAASLAVKYSVQVMDIKRLNNMMSEHGIYSRERLLIPVSDPNILVGGT 180

Query: 181 CYIEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKT 240
           CY+E+DA AKREV VLYLDG   +Q     +   +  SS Q  KRV+H L RSM VDD T
Sbjct: 181 CYVELDAYAKREVVVLYLDGAGPSQRTQSLL---RRRSSEQAKKRVIHYLKRSMQVDDGT 240

Query: 241 AQYYLSISNGNPRAALTEFAEDIRWERHMSIA 270
           A+YY SISNG+PRAA +EF+ED+RWER + ++
Sbjct: 241 AEYYFSISNGDPRAAFSEFSEDLRWEREVGLS 267

BLAST of CsGy2G004110 vs. TrEMBL
Match: tr|A0A1R3JWF3|A0A1R3JWF3_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13456 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 4.8e-92
Identity = 180/271 (66.42%), Postives = 210/271 (77.49%), Query Frame = 0

Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF 60
           M CCCDQ DD   L     +  L S       AD SAA +SPMNSHF AL+CRD LRLIF
Sbjct: 1   MSCCCDQSDDESTL-----TTPLVSSSDNPIFAD-SAATISPMNSHFSALTCRDTLRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           E LS+ DLAR+SCVCR W++VASD E+V  AFKAPWK+ +VVGKPSS SFWRDN +GKFA
Sbjct: 61  EKLSLTDLARASCVCRAWNAVASDDEMVVEAFKAPWKLLEVVGKPSSKSFWRDNGIGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRG+++ASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIP+GNP++LIN  CYI
Sbjct: 121 ISHRILRGETVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPVGNPDLLINGTCYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQ--HLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTA 240
           E+D  AKREVAVLYLDG P  +   L  +VTS++G       +RV+ SL RSM VDD TA
Sbjct: 181 ELDTYAKREVAVLYLDGKPDRKPGQLLNRVTSDRG------KRRVIDSLKRSMQVDDGTA 240

Query: 241 QYYLSISNGNPRAALTEFAEDIRWERHMSIA 270
           QYYLSIS+G+PRAAL++F+ DIRWER   +A
Sbjct: 241 QYYLSISDGDPRAALSQFSSDIRWERQAGLA 259

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004139174.11.5e-15099.63PREDICTED: F-box protein At1g55000 [Cucumis sativus] >KGN60915.1 hypothetical pr... [more]
XP_022150720.19.0e-13589.22F-box protein At1g55000 [Momordica charantia][more]
XP_022937590.14.2e-13287.78F-box protein At1g55000 [Cucurbita moschata][more]
XP_022965884.16.1e-13187.04F-box protein At1g55000 [Cucurbita maxima][more]
XP_023537183.16.1e-13186.13F-box protein At1g55000 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT1G55000.14.4e-7560.00peptidoglycan-binding LysM domain-containing protein[more]
AT5G08200.13.3e-0642.55peptidoglycan-binding LysM domain-containing protein[more]
AT5G23130.11.3e-0542.55Peptidoglycan-binding LysM domain-containing protein[more]
Match NameE-valueIdentityDescription
sp|Q9FZ32|FB60_ARATH7.9e-7460.00F-box protein At1g55000 OS=Arabidopsis thaliana OX=3702 GN=At1g55000 PE=1 SV=1[more]
sp|Q6DEF4|LYSM2_DANRE6.6e-0440.38LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Danio rer... [more]
sp|Q7Z3D4|LYSM3_HUMAN6.6e-0431.34LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Homo sapi... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0LFS6|A0A0A0LFS6_CUCSA1.0e-15099.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G022840 PE=4 SV=1[more]
tr|A0A1S3BZK8|A0A1S3BZK8_CUCME6.2e-11695.87Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103494917 PE=3 SV=1[more]
tr|A0A2P5CFM8|A0A2P5CFM8_9ROSA3.0e-9465.93F-box domain LysM domain containing protein OS=Trema orientalis OX=63057 GN=TorR... [more]
tr|A0A2P5DT00|A0A2P5DT00_PARAD3.7e-9264.71F-box domain LysM domain containing protein OS=Parasponia andersonii OX=3476 GN=... [more]
tr|A0A1R3JWF3|A0A1R3JWF3_9ROSI4.8e-9266.42Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13456 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR036779LysM_dom_sf
IPR001810F-box_dom
IPR018392LysM_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G004110.1CsGy2G004110.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018392LysM domainSMARTSM00257LysM_2coord: 122..166
e-value: 3.3E-4
score: 30.0
IPR018392LysM domainPFAMPF01476LysMcoord: 124..166
e-value: 8.8E-7
score: 28.8
IPR018392LysM domainPROSITEPS51782LYSMcoord: 121..165
score: 11.711
IPR018392LysM domainCDDcd00118LysMcoord: 121..165
e-value: 1.75956E-7
score: 45.5541
IPR001810F-box domainPFAMPF12937F-box-likecoord: 54..85
e-value: 3.0E-6
score: 26.9
IPR036779LysM domain superfamilyGENE3DG3DSA:3.10.350.10coord: 117..172
e-value: 4.8E-11
score: 44.0
NoneNo IPR availableGENE3DG3DSA:1.20.1280.50coord: 52..87
e-value: 2.0E-8
score: 36.1
NoneNo IPR availablePANTHERPTHR20932LOC443603 PROTEIN-RELATEDcoord: 36..265
NoneNo IPR availablePANTHERPTHR20932:SF8LD22649Pcoord: 36..265
NoneNo IPR availableSUPERFAMILYSSF54106LysM domaincoord: 122..166
IPR036047F-box-like domain superfamilySUPERFAMILYSSF81383F-box domaincoord: 54..113