CsGy2G004110 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTAATAAATATTTCCAATCCCACCCTTTATCAATCTACAAAAACACAACCATTCATTTCTTTCTCTCTCTCTCTAAAATGGGATGCTGTTGCGATCAAGACGACGACGTTGAGATCCTCAGACACCTCAATCCCTCCCCGGCCCTTCACTCTCCACCGCCGCAACCTCCACCCGCGGATCATTCCGCTGCCATATTGTCTCCCATGAACTCTCACTTTTTCGCCCTCTCCTGCCGCGATATCCTCCGCCTCATCTTCGAGAACCTTTCCATCCCCGACTTGGCTCGTTCCAGCTGCGTTTGCCGTCTATGGCACTCCGTTGCTTCCGATCAGGAAATTGTCTCCGGAGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTGGTCGGGAAGCCGAGCTCCTGGAGCTTCTGGAGAGATAATTGCCTTGGGAAGTTTGCAATTTCTCATCGAATTCTCCGCGGCGATAGCTTGGCTAGTCTAGCCGTTAAGTATTCTGTTCAGGTATGGGCTTCGAATATTATTATTGTCTTATTTGAGAAAGTGACTGGAAATTAGGGTAAGAAACAGTAGTAGAATTTCTGAGAATCAATTCAATTTTAAGAAGTCGGAATCATCTATTTTCCTTGTTTTCTCTGAAAAACACGACGGTGCGACAGATTTATGGCTGTTCAAATTTTATAACTTCTCTTGCTGAATTTTTGTTTTATGTTGGATATGGAAACATATGAATTGAAAGTAAGGGAGCTAGAGTACAGAGAACACTTTGAACTTTCAGTACTCCTGTTGTAGCTATATGGTTTATTGCAGCAATGTAGCTTATAGATACTTGATTTCTTTAACATTGATCTTGAAGGCACTGCTGCTTTGAAGTCCTAACATTAATTGAAATTTGTTAACCTTTGAAAAAATCTGTACTTCATACTCTGTTGTTTGTGTTCCCAACTCTTGAGTTCTTGTAAAGTTCAATTAAGGACATTCATGTTCCACTGTTGAGATGAACCCTTTCTTGTGGCTATAAACTTTGATACATTATTGAAATCACCAGCAGTTTGAATCACAGTGGAAACTAATGTATATATATAATGAAATAAACTACTTTCGTTGAGGGGAAAAAATGAAAGAACTAAAAGAATCGAAGCCCAGGAACCTCTCCAAATAAAACGAACCAATCAAGAAAAATAATGCCTCTAGAATAGTTAAGAAAGAGCTTCGATGACGAACCCCAAAGAATGAATCTTAGAGCTCAAAAGTCACATCACTAGGTTTCCTTGCCATCTCTCTGAACACTTTGTTCATTTTCTCCCTAAAATATCAATTAGGAAGGATCAAGTATAAATGTTGAAATCAGCTCTTTCTGGTGGCCATGGACTTGGGTGTGTTGTTGAAATCATCATAGTTTTAACAATAGTTGAAACTTGTATATCTTTCACAACATTAACTTGCCGCAAAAATGAAGAGTTAAATAGTTTTTTTCCCACTCCCAAGCACTTGTAATAAATCAATTAGGAAGGGTCAAGTTCAATTTGAGGTCATTCCCTTTTTTTTTTATGACTATGGACTTTGGTGTATTAATCTTGTTTACATATCTTGTTCGTGTAGGTTATATACATACAATGTCTAAATAACATGACGTAGTACTGTTGCATTCTTGAGATGAATGCTTTTTGATGGTTATGGACGTTGGTGTATTAATTTTGTGTGTTTATATATACATCTTTCTTGTAGGTTACAGACATAAAACGTCTGAACAACATGATGAGTGACCATGGCATATACTCAAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATGCTCATTAACAGTATATGTTACATCGAGATGGATGCTATTGCAAAACGAGAAGTTGCAGTGTTATATTTGGACGGAATCCCCATGACCCAACATTTGTATGGTAAGGTGACATCCGAACAAGGTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCATTGAGTCGAAGCATGATGGTTGACGACAAGACCGCTCAATATTACTTATCCATTTCCAATGGCAATCCTCGAGCTGCTCTTACAGAATTTGCCGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAATTCTCACAAAGGCAGATTGTTGCTTCGGGTAAAGATAGTGTGTAAATTATTCAGATGCTTTCTACTGGAATCTGTTGTTATTCCTCTCCATATCCACAAAGAATGATTAGATCAAGAATCCGTATCCAACACCAATTCACTCCTTGGCTCATTGGCTGATTGGTATGTACATCTACATCTACATTCTTACTGTCATTTGAATGAGGCATTTTGCCTCGTTTCATTATTGTGTATATATATATATGATATGATGTATTCTCATATTTACTTGAAGATGATGATGCTCTATTGTGTTTAGCTGTAAATCTAATGTTCTTGGAAGTTAAAAACATGTCTATTTAAGCAAAAAACATTGTAAACAAACTTCTTTTCCCCTAGAATTTAATGTCCATAAAGATTGAATTAGAGGTGTAGTGAGTCTGTTTGTGTTACTTTTTGTTTGCTATCAAGATTTAGTCTTTG CTTAATAAATATTTCCAATCCCACCCTTTATCAATCTACAAAAACACAACCATTCATTTCTTTCTCTCTCTCTCTAAAATGGGATGCTGTTGCGATCAAGACGACGACGTTGAGATCCTCAGACACCTCAATCCCTCCCCGGCCCTTCACTCTCCACCGCCGCAACCTCCACCCGCGGATCATTCCGCTGCCATATTGTCTCCCATGAACTCTCACTTTTTCGCCCTCTCCTGCCGCGATATCCTCCGCCTCATCTTCGAGAACCTTTCCATCCCCGACTTGGCTCGTTCCAGCTGCGTTTGCCGTCTATGGCACTCCGTTGCTTCCGATCAGGAAATTGTCTCCGGAGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTGGTCGGGAAGCCGAGCTCCTGGAGCTTCTGGAGAGATAATTGCCTTGGGAAGTTTGCAATTTCTCATCGAATTCTCCGCGGCGATAGCTTGGCTAGTCTAGCCGTTAAGTATTCTGTTCAGGTTACAGACATAAAACGTCTGAACAACATGATGAGTGACCATGGCATATACTCAAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATGCTCATTAACAGTATATGTTACATCGAGATGGATGCTATTGCAAAACGAGAAGTTGCAGTGTTATATTTGGACGGAATCCCCATGACCCAACATTTGTATGGTAAGGTGACATCCGAACAAGGTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCATTGAGTCGAAGCATGATGGTTGACGACAAGACCGCTCAATATTACTTATCCATTTCCAATGGCAATCCTCGAGCTGCTCTTACAGAATTTGCCGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAATTCTCACAAAGGCAGATTGTTGCTTCGGGTAAAGATAGTGTGTAAATTATTCAGATGCTTTCTACTGGAATCTGTTGTTATTCCTCTCCATATCCACAAAGAATGATTAGATCAAGAATCCGTATCCAACACCAATTCACTCCTTGGCTCATTGGCTGATTGGTATGTACATCTACATCTACATTCTTACTGTCATTTGAATGAGGCATTTTGCCTCGTTTCATTATTGTGTATATATATATATGATATGATGTATTCTCATATTTACTTGAAGATGATGATGCTCTATTGTGTTTAGCTGTAAATCTAATGTTCTTGGAAGTTAAAAACATGTCTATTTAAGCAAAAAACATTGTAAACAAACTTCTTTTCCCCTAGAATTTAATGTCCATAAAGATTGAATTAGAGGTGTAGTGAGTCTGTTTGTGTTACTTTTTGTTTGCTATCAAGATTTAGTCTTTG ATGGGATGCTGTTGCGATCAAGACGACGACGTTGAGATCCTCAGACACCTCAATCCCTCCCCGGCCCTTCACTCTCCACCGCCGCAACCTCCACCCGCGGATCATTCCGCTGCCATATTGTCTCCCATGAACTCTCACTTTTTCGCCCTCTCCTGCCGCGATATCCTCCGCCTCATCTTCGAGAACCTTTCCATCCCCGACTTGGCTCGTTCCAGCTGCGTTTGCCGTCTATGGCACTCCGTTGCTTCCGATCAGGAAATTGTCTCCGGAGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTGGTCGGGAAGCCGAGCTCCTGGAGCTTCTGGAGAGATAATTGCCTTGGGAAGTTTGCAATTTCTCATCGAATTCTCCGCGGCGATAGCTTGGCTAGTCTAGCCGTTAAGTATTCTGTTCAGGTTACAGACATAAAACGTCTGAACAACATGATGAGTGACCATGGCATATACTCAAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATGCTCATTAACAGTATATGTTACATCGAGATGGATGCTATTGCAAAACGAGAAGTTGCAGTGTTATATTTGGACGGAATCCCCATGACCCAACATTTGTATGGTAAGGTGACATCCGAACAAGGTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCATTGAGTCGAAGCATGATGGTTGACGACAAGACCGCTCAATATTACTTATCCATTTCCAATGGCAATCCTCGAGCTGCTCTTACAGAATTTGCCGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAA MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPADHSAAILSPMNSHFFALSCRDILRLIFENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYIEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQYYLSISNGNPRAALTEFAEDIRWERHMSIA
BLAST of CsGy2G004110 vs. NCBI nr
Match: XP_004139174.1 (PREDICTED: F-box protein At1g55000 [Cucumis sativus] >KGN60915.1 hypothetical protein Csa_2G022840 [Cucumis sativus]) HSP 1 Score: 541.6 bits (1394), Expect = 1.5e-150 Identity = 268/269 (99.63%), Postives = 269/269 (100.00%), Query Frame = 0
BLAST of CsGy2G004110 vs. NCBI nr
Match: XP_022150720.1 (F-box protein At1g55000 [Momordica charantia]) HSP 1 Score: 489.2 bits (1258), Expect = 9.0e-135 Identity = 240/269 (89.22%), Postives = 252/269 (93.68%), Query Frame = 0
BLAST of CsGy2G004110 vs. NCBI nr
Match: XP_022937590.1 (F-box protein At1g55000 [Cucurbita moschata]) HSP 1 Score: 480.3 bits (1235), Expect = 4.2e-132 Identity = 237/270 (87.78%), Postives = 250/270 (92.59%), Query Frame = 0
BLAST of CsGy2G004110 vs. NCBI nr
Match: XP_022965884.1 (F-box protein At1g55000 [Cucurbita maxima]) HSP 1 Score: 476.5 bits (1225), Expect = 6.1e-131 Identity = 235/270 (87.04%), Postives = 248/270 (91.85%), Query Frame = 0
BLAST of CsGy2G004110 vs. NCBI nr
Match: XP_023537183.1 (F-box protein At1g55000 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 476.5 bits (1225), Expect = 6.1e-131 Identity = 236/274 (86.13%), Postives = 248/274 (90.51%), Query Frame = 0
BLAST of CsGy2G004110 vs. TAIR10
Match: AT1G55000.1 (peptidoglycan-binding LysM domain-containing protein) HSP 1 Score: 278.5 bits (711), Expect = 4.4e-75 Identity = 132/220 (60.00%), Postives = 173/220 (78.64%), Query Frame = 0
BLAST of CsGy2G004110 vs. TAIR10
Match: AT5G08200.1 (peptidoglycan-binding LysM domain-containing protein) HSP 1 Score: 49.7 bits (117), Expect = 3.3e-06 Identity = 20/47 (42.55%), Postives = 36/47 (76.60%), Query Frame = 0
BLAST of CsGy2G004110 vs. TAIR10
Match: AT5G23130.1 (Peptidoglycan-binding LysM domain-containing protein) HSP 1 Score: 47.8 bits (112), Expect = 1.3e-05 Identity = 20/47 (42.55%), Postives = 34/47 (72.34%), Query Frame = 0
BLAST of CsGy2G004110 vs. Swiss-Prot
Match: sp|Q9FZ32|FB60_ARATH (F-box protein At1g55000 OS=Arabidopsis thaliana OX=3702 GN=At1g55000 PE=1 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 7.9e-74 Identity = 132/220 (60.00%), Postives = 173/220 (78.64%), Query Frame = 0
BLAST of CsGy2G004110 vs. Swiss-Prot
Match: sp|Q6DEF4|LYSM2_DANRE (LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Danio rerio OX=7955 GN=lysmd2 PE=2 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 6.6e-04 Identity = 21/52 (40.38%), Postives = 33/52 (63.46%), Query Frame = 0
BLAST of CsGy2G004110 vs. Swiss-Prot
Match: sp|Q7Z3D4|LYSM3_HUMAN (LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Homo sapiens OX=9606 GN=LYSMD3 PE=1 SV=2) HSP 1 Score: 46.2 bits (108), Expect = 6.6e-04 Identity = 21/67 (31.34%), Postives = 38/67 (56.72%), Query Frame = 0
BLAST of CsGy2G004110 vs. TrEMBL
Match: tr|A0A0A0LFS6|A0A0A0LFS6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G022840 PE=4 SV=1) HSP 1 Score: 541.6 bits (1394), Expect = 1.0e-150 Identity = 268/269 (99.63%), Postives = 269/269 (100.00%), Query Frame = 0
BLAST of CsGy2G004110 vs. TrEMBL
Match: tr|A0A1S3BZK8|A0A1S3BZK8_CUCME (Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103494917 PE=3 SV=1) HSP 1 Score: 426.0 bits (1094), Expect = 6.2e-116 Identity = 209/218 (95.87%), Postives = 213/218 (97.71%), Query Frame = 0
BLAST of CsGy2G004110 vs. TrEMBL
Match: tr|A0A2P5CFM8|A0A2P5CFM8_9ROSA (F-box domain LysM domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_286610 PE=4 SV=1) HSP 1 Score: 354.0 bits (907), Expect = 3.0e-94 Identity = 178/270 (65.93%), Postives = 213/270 (78.89%), Query Frame = 0
BLAST of CsGy2G004110 vs. TrEMBL
Match: tr|A0A2P5DT00|A0A2P5DT00_PARAD (F-box domain LysM domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_034650 PE=4 SV=1) HSP 1 Score: 347.1 bits (889), Expect = 3.7e-92 Identity = 176/272 (64.71%), Postives = 213/272 (78.31%), Query Frame = 0
BLAST of CsGy2G004110 vs. TrEMBL
Match: tr|A0A1R3JWF3|A0A1R3JWF3_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13456 PE=4 SV=1) HSP 1 Score: 346.7 bits (888), Expect = 4.8e-92 Identity = 180/271 (66.42%), Postives = 210/271 (77.49%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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