CsaV3_2G005340 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G005340
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	F-box protein
Location	chr2 : 2924143 .. 2926910 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTTGATTTTGATAAATTTAGTTTTTTTTTTTCTCAAACTAACACCAACTAATTGGTATGTCTTTGGTTGGGTCTCTAACTCATTCATTTTTATGCACCATGCTCACTCCTAAATCCAATACTTCTAAAGGAAAGAGTTAAATTAAACGGGTAAAAGATGAATTGTTGAGTGGACGATTATAGGCCTAACTTAATAAATATTTCCAATCCCACCCTTTATCAATCTACAAAAACACAACCATTCATTTCATTCTCTCTCTCTCTAAAATGGGATGCTGTTGCGATCAAGACGACGACGTTGAGATCCTCAGACACCTCAATCCCTCCCCGGCCCTTCACTCTCCACCGCCGCAACCTCCACCCGCGGATCATTCCGCTGCCATATTGTCTCCCATGAACTCTCACTTTTTCGCCCTCTCCTGCCGCGATATCCTCCGCCTCATCTTCGAGAACCTTTCCATCCCCGACTTGGCTCGTTCCAGCTGCGTTTGCCGTCTATGGCACTCCGTTGCTTCCGATCAGGAAATTGTCTCCGGAGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTGGTCGGGAAGCCGAGCTCCTGGAGCTTCTGGAGAGATAATTGCCTTGGGAAGTTTGCAATTTCTCATCGAATTCTCCGCGGCGATAGCTTGGCTAGTCTAGCCGTTAAGTATTCTGTTCAGGTATGGGCTTCGAATATTATTATTGTCTTATTTGAGAAAGTGACTGGAAATTAGGGTAAGAAACAGTAGTAGAATTTCTGAGAATCAATTCAATTTTAAGAAGTTGGAATCATCTATTTTCCTTGTTTTCTCTGAAAAACACGACGGTGCGACAGATTTATGGCTGTTCAAATTTTATAACTTCTCTTGCTGAATTTTTGTTTTATGTTGGATGTGGAAACATATGAATTGAAAGTAAGGGAGCTAGAGTACAGAGAACACTTTGAACTTTCAGTACTCCTGTTGTAGCTATATGGTTTATTGCAGCAATGTAGCTTATAGATACTTGATTTCTTTAACATTGATCTTGAAGGCCCTGCTGCTTTGAAGTCCTAACATTAATTGAAATTTGTTAACCTTTGAAAAAATCTGTACTTCATACTCTGTTGTTTGTGTTCCCAACTCTTGAGTTCTTGTAAAGTTCAATTAAGGACATTCATGTTCCACTGTTGAGATGAACCCTTTCTTGTGGCTATAAACTTTGATACATTATTGAAATCACCAGCAGTTTGAACCATAGTGGAAACTAATATATATATATATATATAATGAAATAAACTACTTTCGTTGAGGGGGGAAAATGAAAGAACTAAAAGAATCGAAGCCCAGGAACCTCTCCAAATAAAACGAACCAATCAAGAAAAATAATGCCTCTAGAATAGTTAAGAAAGAGCTTCGATGACGAACCCCAAAGAATGAATCTTAGAGCTCAAAAGTCACATCACTAGGTTTCCTTGCCATCTCTCTGAACACTTTGTTCATTTTCTCCCTAAAATATCAATTAGGAAGGATCAAGTATAAATGTTGAAATCAGCTCTTTCTGGTGGCCATGGACTTGGGTGTGTTGTTGAAATCATCATAGTTTTAACAATAGTTGAAACTTGTATATCTTTCACAACATTAACTTGCCGCAAAAATGAAGAGTTAAATAGTTTTTTTCCCACTCCCAAGCACTTGTAATAAATCAATTAGGAAGGGTCAAGTTCAATTTGAGGTCATTCCCTTTTTTTTATGACTATGGACTTTGGTGTATTAATCTTGTTTACATATCTTGTTCGTGTAGGTTATATACATACAATGTCTAAATAACATGACGTAGTACCGTTGCATTCTTGAGATGAATGCTTTTTGATGGTTATGGACGTTGGTGTATTAATTTTGTGTGTTTATATATACATCTTTCTTGTAGGTTACAGACATAAAACGTCTGAACAACATGATGAGTGACCATGGCATATACTCAAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATGCTCATTAACAGTATATGTTACATTGAGATGGATGCTATTGCAAAACGAGAAGTTGCAGTGTTATATTTGGACGGAATCCCCATGACCCAACATTTGTATGGTAAGGTGACATCCGAACAAGGTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCATTGAGTCGAAGCATGATGGTTGACGACGAAACCGCTCAATATTACTTATCCATTTCCAATGGCAATCCTCGAGCTGCTCTTACAGAATTTGCCGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAATTCTCACAAAGGCAGATTGTTGCTTCGGGTAAAGATAGTGTGTAAATTATTCAGATGCTTTCTACTGGAATCTGTTGTTATTCCTCTCCATATCCACAAAGAATGATTAGATCAAGAATCCGTATCCAACACCAATTCACTCCTTGGCTCATTGGCTGATCGGTATGTACATCTACATCTACATTCTTACTGTCATTTGAATGAGGCATTTTGCCTCGTTTCATTATTGTGTATATATATATATGATATGATGTATTCTCATATTTACTTGAAGATGATGATGCTCTATTGTGTTTAGCTGTAAATCTAATGTTCTTGGAAGTTAAAAACATGTCTATTTAAGCAAAAAACATTGTAAACAAACTTCTTTTCCCCTAGAATTTAATGTCCATAAAGATTGAATTAGAGGTGTAGTGAGTCTGTTTGTGTTACTTTTTGTTTGCTATCAAGATTTAGTCTTTG

mRNA sequence

ATGGGATGCTGTTGCGATCAAGACGACGACGTTGAGATCCTCAGACACCTCAATCCCTCCCCGGCCCTTCACTCTCCACCGCCGCAACCTCCACCCGCGGATCATTCCGCTGCCATATTGTCTCCCATGAACTCTCACTTTTTCGCCCTCTCCTGCCGCGATATCCTCCGCCTCATCTTCGAGAACCTTTCCATCCCCGACTTGGCTCGTTCCAGCTGCGTTTGCCGTCTATGGCACTCCGTTGCTTCCGATCAGGAAATTGTCTCCGGAGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTGGTCGGGAAGCCGAGCTCCTGGAGCTTCTGGAGAGATAATTGCCTTGGGAAGTTTGCAATTTCTCATCGAATTCTCCGCGGCGATAGCTTGGCTAGTCTAGCCGTTAAGTATTCTGTTCAGGTTACAGACATAAAACGTCTGAACAACATGATGAGTGACCATGGCATATACTCAAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATGCTCATTAACAGTATATGTTACATTGAGATGGATGCTATTGCAAAACGAGAAGTTGCAGTGTTATATTTGGACGGAATCCCCATGACCCAACATTTGTATGGTAAGGTGACATCCGAACAAGGTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCATTGAGTCGAAGCATGATGGTTGACGACGAAACCGCTCAATATTACTTATCCATTTCCAATGGCAATCCTCGAGCTGCTCTTACAGAATTTGCCGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAA

Coding sequence (CDS)

ATGGGATGCTGTTGCGATCAAGACGACGACGTTGAGATCCTCAGACACCTCAATCCCTCCCCGGCCCTTCACTCTCCACCGCCGCAACCTCCACCCGCGGATCATTCCGCTGCCATATTGTCTCCCATGAACTCTCACTTTTTCGCCCTCTCCTGCCGCGATATCCTCCGCCTCATCTTCGAGAACCTTTCCATCCCCGACTTGGCTCGTTCCAGCTGCGTTTGCCGTCTATGGCACTCCGTTGCTTCCGATCAGGAAATTGTCTCCGGAGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTGGTCGGGAAGCCGAGCTCCTGGAGCTTCTGGAGAGATAATTGCCTTGGGAAGTTTGCAATTTCTCATCGAATTCTCCGCGGCGATAGCTTGGCTAGTCTAGCCGTTAAGTATTCTGTTCAGGTTACAGACATAAAACGTCTGAACAACATGATGAGTGACCATGGCATATACTCAAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATGCTCATTAACAGTATATGTTACATTGAGATGGATGCTATTGCAAAACGAGAAGTTGCAGTGTTATATTTGGACGGAATCCCCATGACCCAACATTTGTATGGTAAGGTGACATCCGAACAAGGTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCATTGAGTCGAAGCATGATGGTTGACGACGAAACCGCTCAATATTACTTATCCATTTCCAATGGCAATCCTCGAGCTGCTCTTACAGAATTTGCCGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAA

Protein sequence

MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPADHSAAILSPMNSHFFALSCRDILRLIFENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYIEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGNPRAALTEFAEDIRWERHMSIA

Homology

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BLAST of CsaV3_2G005340 vs. NCBI nr
Match: XP_004139174.1 (PREDICTED: F-box protein At1g55000 [Cucumis sativus] >KGN60915.1 hypothetical protein Csa_2G022840 [Cucumis sativus])

HSP 1 Score: 543.9 bits (1400), Expect = 3.1e-151
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF 60
           MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA
Sbjct: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI
Sbjct: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQY 240
           EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQY
Sbjct: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQY 240

Query: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 270
           YLSISNGNPRAALTEFAEDIRWERHMSIA
Sbjct: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 269

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BLAST of CsaV3_2G005340 vs. NCBI nr
Match: XP_022150720.1 (F-box protein At1g55000 [Momordica charantia])

HSP 1 Score: 491.5 bits (1264), Expect = 1.8e-135
Identity = 241/269 (89.59%), Postives = 252/269 (93.68%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF 60
           MGCCCDQDDDVEILRHLNP+ A+HSP      AD S A+LSPMNSHFFALSCRDILRLIF
Sbjct: 1   MGCCCDQDDDVEILRHLNPAIAVHSPATLPPEADSSTAVLSPMNSHFFALSCRDILRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           E LSIPDLARSSCVCRLW SVASD EIV+GAFKAPWK+KDV+GKPSS SFWRDNCLGKFA
Sbjct: 61  EKLSIPDLARSSCVCRLWQSVASDHEIVAGAFKAPWKLKDVIGKPSSGSFWRDNCLGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICYI
Sbjct: 121 ISHRILRGDSLASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQY 240
           EMDAIAKREVAVLYLDGIP T HLYGKVT EQGMSSVQVNK+VLHSLSRSMMVDDETA+Y
Sbjct: 181 EMDAIAKREVAVLYLDGIPTTHHLYGKVTCEQGMSSVQVNKQVLHSLSRSMMVDDETARY 240

Query: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 270
           YLSIS+G+PRAALTEFAEDIRWERHMSIA
Sbjct: 241 YLSISHGDPRAALTEFAEDIRWERHMSIA 269

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BLAST of CsaV3_2G005340 vs. NCBI nr
Match: XP_022937590.1 (F-box protein At1g55000 [Cucurbita moschata])

HSP 1 Score: 482.6 bits (1241), Expect = 8.5e-133
Identity = 238/270 (88.15%), Postives = 250/270 (92.59%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPP-PQXXXADHSAAILSPMNSHFFALSCRDILRLI 60
           MGCCCD+DDDVEILRHL+PSP + SPP  Q    D S A+LSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60

Query: 61  FENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKF 120
           FE LSIPDLARSSCV RLW+SVASDQEIVSGAFKAPWKVKDV+GKPSS SFWRDNCLGKF
Sbjct: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICY 180
           AISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQ 240
           IEMDAIAKREVA LYLDGIP T HLYGK T++QGMSSVQV KRVLHSLSRSMMVDDETAQ
Sbjct: 181 IEMDAIAKREVATLYLDGIPTTHHLYGKETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISNGNPRAALTEFAEDIRWERHMSIA 270
           YYLSIS+G+PRAALTEFAEDIRWERHM +A
Sbjct: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 270

[Close]

BLAST of CsaV3_2G005340 vs. NCBI nr
Match: XP_022965884.1 (F-box protein At1g55000 [Cucurbita maxima])

HSP 1 Score: 478.8 bits (1231), Expect = 1.2e-131
Identity = 236/270 (87.41%), Postives = 248/270 (91.85%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPP-PQXXXADHSAAILSPMNSHFFALSCRDILRLI 60
           MGCCCD+DDDVEILRHL+PSP + SPP  Q      S A+LSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPGSSTAVLSPMNSHFFALSCRDILRLI 60

Query: 61  FENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKF 120
           FE LSIPDLARSSCV RLW+SVASDQEIVSGAFKAPWKVKDV+GKPSS SFWRDNCLGKF
Sbjct: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICY 180
           AISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRER+LIPIGNPN+LINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQ 240
           IEMDAIAKREVA LYLDGIP T HLYGK T +QGMSSVQV KRVLHSLSRSMMVDDETAQ
Sbjct: 181 IEMDAIAKREVATLYLDGIPTTHHLYGKETDDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISNGNPRAALTEFAEDIRWERHMSIA 270
           YYLSIS+G+PRAALTEFAEDIRWERHM +A
Sbjct: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 270

[Close]

BLAST of CsaV3_2G005340 vs. NCBI nr
Match: XP_023537183.1 (F-box protein At1g55000 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 478.8 bits (1231), Expect = 1.2e-131
Identity = 237/274 (86.50%), Postives = 248/274 (90.51%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPP-----PQXXXADHSAAILSPMNSHFFALSCRDI 60
           MGCCCD+DDDVEILRHL+PSP + SPP      Q    D S A+LSPMNSHFFALSCRDI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQLQQQPTLPDSSTAVLSPMNSHFFALSCRDI 60

Query: 61  LRLIFENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNC 120
           LRLIFE LSIPDLARSSCV RLW+SVASDQEIVSGAFKAPWKVKDV+GKPSS SFWRDNC
Sbjct: 61  LRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNC 120

Query: 121 LGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLIN 180
           LGKFAISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIPIGNPN+LIN
Sbjct: 121 LGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILIN 180

Query: 181 SICYIEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDD 240
           SICYIEMDAIAKREVA LYLDGIP T HLYGK T + GMSSVQV KRVLHSLSRSMMVDD
Sbjct: 181 SICYIEMDAIAKREVATLYLDGIPTTHHLYGKETDDHGMSSVQVKKRVLHSLSRSMMVDD 240

Query: 241 ETAQYYLSISNGNPRAALTEFAEDIRWERHMSIA 270
           ETAQYYLSIS+G+PRAALTEFAEDIRWERHM +A
Sbjct: 241 ETAQYYLSISDGDPRAALTEFAEDIRWERHMGMA 274

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BLAST of CsaV3_2G005340 vs. TAIR10
Match: AT1G55000.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 279.3 bits (713), Expect = 2.6e-75
Identity = 132/220 (60.00%), Postives = 173/220 (78.64%), Query Frame = 0


Query: 49  ALSCRDILRLIFENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSW 108
           AL CRD L +IF+ L++ DLAR+SCVC++W+SVA++ ++V  AF APW++K++VG+P+S 
Sbjct: 2   ALYCRDTLIIIFQKLTVADLARASCVCKVWNSVATEDDLVVSAFTAPWRIKELVGRPASV 61

Query: 109 SFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIG 168
           SFWRDN + KFAISHRI RGDS+ SLAVKY+VQV DIKRLNNMMSDHGIYSR+RLLIPI 
Sbjct: 62  SFWRDNGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPIS 121

Query: 169 NPNMLINSICYIEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLS 228
           NP +L N+ CY+E+D  AKREVAVLYL+G P  +      T++Q   S    +R++ SL 
Sbjct: 122 NPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPV-PGTNQQSNLSADGKRRLIESLR 181

Query: 229 RSMMVDDETAQYYLSISNGNPRAALTEFAEDIRWERHMSI 269
           RSM VDD TA YYL+I+ G+PR+AL+EF+ D+RWER   +
Sbjct: 182 RSMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAGL 220

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BLAST of CsaV3_2G005340 vs. TAIR10
Match: AT5G08200.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 49.7 bits (117), Expect = 3.3e-06
Identity = 20/47 (42.55%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPI 168
           I HRI + D+LA +A+KY V+V D+K++NN+++D  +++ + L IP+
Sbjct: 78  IEHRISKFDTLAGVAIKYGVEVADVKKMNNLVTDLQMFALKSLQIPL 124

[Close]

BLAST of CsaV3_2G005340 vs. TAIR10
Match: AT5G23130.1 (Peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-05
Identity = 20/47 (42.55%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPI 168
           I HR+ + D+LA +A+KY V+V DI +LN +++D  +++ E L IP+
Sbjct: 70  IEHRVSKFDTLAGIAIKYGVEVADITKLNGLVTDLQMFALESLRIPL 116

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BLAST of CsaV3_2G005340 vs. Swiss-Prot
Match: sp|Q9FZ32|FB60_ARATH (F-box protein At1g55000 OS=Arabidopsis thaliana OX=3702 GN=At1g55000 PE=1 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 4.7e-74
Identity = 132/220 (60.00%), Postives = 173/220 (78.64%), Query Frame = 0


Query: 49  ALSCRDILRLIFENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSW 108
           AL CRD L +IF+ L++ DLAR+SCVC++W+SVA++ ++V  AF APW++K++VG+P+S 
Sbjct: 2   ALYCRDTLIIIFQKLTVADLARASCVCKVWNSVATEDDLVVSAFTAPWRIKELVGRPASV 61

Query: 109 SFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIG 168
           SFWRDN + KFAISHRI RGDS+ SLAVKY+VQV DIKRLNNMMSDHGIYSR+RLLIPI 
Sbjct: 62  SFWRDNGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPIS 121

Query: 169 NPNMLINSICYIEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLS 228
           NP +L N+ CY+E+D  AKREVAVLYL+G P  +      T++Q   S    +R++ SL 
Sbjct: 122 NPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPV-PGTNQQSNLSADGKRRLIESLR 181

Query: 229 RSMMVDDETAQYYLSISNGNPRAALTEFAEDIRWERHMSI 269
           RSM VDD TA YYL+I+ G+PR+AL+EF+ D+RWER   +
Sbjct: 182 RSMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAGL 220

[Close]

BLAST of CsaV3_2G005340 vs. Swiss-Prot
Match: sp|Q6DEF4|LYSM2_DANRE (LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Danio rerio OX=7955 GN=lysmd2 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 6.6e-04
Identity = 21/52 (40.38%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 116 LGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPI 168
           LG+  I HR+  G++L  +A+KY V +  IKR+N + S+  I+ R  L IP+
Sbjct: 60  LGEKYIEHRVTDGETLQGIALKYGVTMEQIKRVNKLFSNDCIFLRNTLSIPV 111

[Close]

BLAST of CsaV3_2G005340 vs. Swiss-Prot
Match: sp|Q7Z3D4|LYSM3_HUMAN (LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Homo sapiens OX=9606 GN=LYSMD3 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 6.6e-04
Identity = 21/67 (31.34%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 112 RDNCLGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPN 171
           RD       ++  I  GD+L ++A++Y   V DIKR+NN++SD   ++   + IP+   +
Sbjct: 56  RDRLDDIIVLTKDIQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFS 115

Query: 172 MLINSIC 179
            L  ++C
Sbjct: 116 SLTETLC 122

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BLAST of CsaV3_2G005340 vs. TrEMBL
Match: tr|A0A0A0LFS6|A0A0A0LFS6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G022840 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 2.1e-151
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF 60
           MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA
Sbjct: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI
Sbjct: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQY 240
           EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQY
Sbjct: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQY 240

Query: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 270
           YLSISNGNPRAALTEFAEDIRWERHMSIA
Sbjct: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 269

[Close]

BLAST of CsaV3_2G005340 vs. TrEMBL
Match: tr|A0A1S3BZK8|A0A1S3BZK8_CUCME (Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103494917 PE=3 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 6.2e-116
Identity = 209/218 (95.87%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF 60
           MGCCCDQDDDVEILRHLNPSP +HSPP  XXX DHS AILSPMNSHFFALSCRDILRLIF
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPPVHSPPXXXXXXDHSTAILSPMNSHFFALSCRDILRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           E+LSIPDLARSSCVCRLWHSVASDQEIV+GAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA
Sbjct: 61  EHLSIPDLARSSCVCRLWHSVASDQEIVAGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICYI
Sbjct: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQ 219
           EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQ
Sbjct: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQ 218

[Close]

BLAST of CsaV3_2G005340 vs. TrEMBL
Match: tr|A0A2P5CFM8|A0A2P5CFM8_9ROSA (F-box domain LysM domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_286610 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 1.8e-94
Identity = 178/270 (65.93%), Postives = 213/270 (78.89%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHS--PPPQXXXADHSAAILSPMNSHFFALSCRDILRL 60
           MGCCCD+DDD EIL+HLNP+  + S         +  S  ++SPMNSHF AL+ RD+LR+
Sbjct: 1   MGCCCDEDDD-EILKHLNPTIPIQSQFQTLTLDPSSSSGDVISPMNSHFSALTSRDLLRV 60

Query: 61  IFENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGK 120
           IF+ L IPDLARSSCVCRLW+SVASD+EI++ AFKAPWK+  VVG+P S SFWRDN LGK
Sbjct: 61  IFQKLPIPDLARSSCVCRLWNSVASDKEILTRAFKAPWKLAHVVGEPLSGSFWRDNNLGK 120

Query: 121 FAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSIC 180
           FAISHRI+RGDS+ASLAVKYSVQV DIKRLNNMMS+HGIYSRERLLIP+ +PN+L+   C
Sbjct: 121 FAISHRIVRGDSVASLAVKYSVQVMDIKRLNNMMSEHGIYSRERLLIPVSDPNILVGGTC 180

Query: 181 YIEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETA 240
           Y+E+DA AKREVAVLYLDG   +Q     +   Q  SS Q  KRV+HSL RSM VDD TA
Sbjct: 181 YVELDAHAKREVAVLYLDGAGPSQKTRSLL---QRRSSEQAKKRVIHSLKRSMQVDDGTA 240

Query: 241 QYYLSISNGNPRAALTEFAEDIRWERHMSI 269
           +YY SISNG+PRAA +EF+ED+RWER   +
Sbjct: 241 EYYFSISNGDPRAAFSEFSEDLRWEREAGL 266

[Close]

BLAST of CsaV3_2G005340 vs. TrEMBL
Match: tr|A0A2P5DT00|A0A2P5DT00_PARAD (F-box domain LysM domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_034650 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.2e-92
Identity = 176/272 (64.71%), Postives = 213/272 (78.31%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAA---ILSPMNSHFFALSCRDILR 60
           MGCCCD+DDD EIL+HLNP+    S   Q    D S++   ++SPMNSHF AL+ RD+LR
Sbjct: 1   MGCCCDEDDD-EILKHLNPTIPTQS-QSQTLTLDPSSSSGDVISPMNSHFSALTSRDLLR 60

Query: 61  LIFENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLG 120
           +IF+ L I DLARSSCVCRLW+SVASD+EI++ AFKAPWK+  VVG+P S SFWRDN LG
Sbjct: 61  VIFQKLPILDLARSSCVCRLWNSVASDKEILTRAFKAPWKLAHVVGEPLSGSFWRDNNLG 120

Query: 121 KFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSI 180
           KFAISHRI+RGDS ASLAVKYSVQV DIKRLNNMMS+HGIYSRERLLIP+ +PN+L+   
Sbjct: 121 KFAISHRIVRGDSAASLAVKYSVQVMDIKRLNNMMSEHGIYSRERLLIPVSDPNILVGGT 180

Query: 181 CYIEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDET 240
           CY+E+DA AKREV VLYLDG   +Q     +   +  SS Q  KRV+H L RSM VDD T
Sbjct: 181 CYVELDAYAKREVVVLYLDGAGPSQRTQSLL---RRRSSEQAKKRVIHYLKRSMQVDDGT 240

Query: 241 AQYYLSISNGNPRAALTEFAEDIRWERHMSIA 270
           A+YY SISNG+PRAA +EF+ED+RWER + ++
Sbjct: 241 AEYYFSISNGDPRAAFSEFSEDLRWEREVGLS 267

[Close]

BLAST of CsaV3_2G005340 vs. TrEMBL
Match: tr|A0A1R3JWF3|A0A1R3JWF3_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13456 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 2.8e-92
Identity = 180/271 (66.42%), Postives = 210/271 (77.49%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQXXXADHSAAILSPMNSHFFALSCRDILRLIF 60
           M CCCDQ DD   L     +  L S       AD SAA +SPMNSHF AL+CRD LRLIF
Sbjct: 1   MSCCCDQSDDESTL-----TTPLVSSSDNPIFAD-SAATISPMNSHFSALTCRDTLRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           E LS+ DLAR+SCVCR W++VASD E+V  AFKAPWK+ +VVGKPSS SFWRDN +GKFA
Sbjct: 61  EKLSLTDLARASCVCRAWNAVASDDEMVVEAFKAPWKLLEVVGKPSSKSFWRDNGIGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRG+++ASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIP+GNP++LIN  CYI
Sbjct: 121 ISHRILRGETVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPVGNPDLLINGTCYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQ--HLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETA 240
           E+D  AKREVAVLYLDG P  +   L  +VTS++G       +RV+ SL RSM VDD TA
Sbjct: 181 ELDTYAKREVAVLYLDGKPDRKPGQLLNRVTSDRG------KRRVIDSLKRSMQVDDGTA 240

Query: 241 QYYLSISNGNPRAALTEFAEDIRWERHMSIA 270
           QYYLSIS+G+PRAAL++F+ DIRWER   +A
Sbjct: 241 QYYLSISDGDPRAALSQFSSDIRWERQAGLA 259

The following BLAST results are available for this feature:

BLAST of CsaV3_2G005340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139174.1	3.1e-151	100.00	PREDICTED: F-box protein At1g55000 [Cucumis sativus] >KGN60915.1 hypothetical pr...	[more]
XP_022150720.1	1.8e-135	89.59	F-box protein At1g55000 [Momordica charantia]	[more]
XP_022937590.1	8.5e-133	88.15	F-box protein At1g55000 [Cucurbita moschata]	[more]
XP_022965884.1	1.2e-131	87.41	F-box protein At1g55000 [Cucurbita maxima]	[more]
XP_023537183.1	1.2e-131	86.50	F-box protein At1g55000 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_2G005340 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55000.1	2.6e-75	60.00	peptidoglycan-binding LysM domain-containing protein	[more]
AT5G08200.1	3.3e-06	42.55	peptidoglycan-binding LysM domain-containing protein	[more]
AT5G23130.1	1.3e-05	42.55	Peptidoglycan-binding LysM domain-containing protein	[more]

BLAST of CsaV3_2G005340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FZ32\|FB60_ARATH	4.7e-74	60.00	F-box protein At1g55000 OS=Arabidopsis thaliana OX=3702 GN=At1g55000 PE=1 SV=1	[more]
sp\|Q6DEF4\|LYSM2_DANRE	6.6e-04	40.38	LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Danio rer...	[more]
sp\|Q7Z3D4\|LYSM3_HUMAN	6.6e-04	31.34	LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Homo sapi...	[more]

BLAST of CsaV3_2G005340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LFS6\|A0A0A0LFS6_CUCSA	2.1e-151	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G022840 PE=4 SV=1	[more]
tr\|A0A1S3BZK8\|A0A1S3BZK8_CUCME	6.2e-116	95.87	Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103494917 PE=3 SV=1	[more]
tr\|A0A2P5CFM8\|A0A2P5CFM8_9ROSA	1.8e-94	65.93	F-box domain LysM domain containing protein OS=Trema orientalis OX=63057 GN=TorR...	[more]
tr\|A0A2P5DT00\|A0A2P5DT00_PARAD	2.2e-92	64.71	F-box domain LysM domain containing protein OS=Parasponia andersonii OX=3476 GN=...	[more]
tr\|A0A1R3JWF3\|A0A1R3JWF3_9ROSI	2.8e-92	66.42	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13456 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf
IPR036779	LysM_dom_sf
IPR001810	F-box_dom
IPR018392	LysM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0007049	cell cycle
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0017053	transcriptional repressor complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G005340.1	CsaV3_2G005340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	SMART	SM00257	LysM_2	coord: 122..166 e-value: 3.3E-4 score: 30.0
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 124..166 e-value: 8.8E-7 score: 28.8
IPR018392	LysM domain	PROSITE	PS51782	LYSM	coord: 121..165 score: 11.711
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 121..165 e-value: 1.75956E-7 score: 45.5541
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 52..87 e-value: 2.0E-8 score: 36.1
None	No IPR available	PANTHER	PTHR20932:SF8	LD22649P	coord: 36..265
None	No IPR available	PANTHER	PTHR20932	LOC443603 PROTEIN-RELATED	coord: 36..265
None	No IPR available	SUPERFAMILY	SSF54106	LysM domain	coord: 122..166
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 54..85 e-value: 3.0E-6 score: 26.9
IPR036779	LysM domain superfamily	GENE3D	G3DSA:3.10.350.10		coord: 117..172 e-value: 4.8E-11 score: 44.0
IPR036047	F-box-like domain superfamily	SUPERFAMILY	SSF81383	F-box domain	coord: 54..113

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G005340	CSPI02G04010	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G005340	Cucsa.091400	Cucumber (Gy14) v1	cgycucB097
CsaV3_2G005340	CmaCh12G010700	Cucurbita maxima (Rimu)	cmacucB0202
CsaV3_2G005340	CmoCh12G010830	Cucurbita moschata (Rifu)	cmocucB0185
CsaV3_2G005340	Cp4.1LG07g09110	Cucurbita pepo (Zucchini)	cpecucB1014
CsaV3_2G005340	CsGy2G004110	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G005340	Carg17541	Silver-seed gourd	carcucB0754
CsaV3_2G005340	Cla019895	Watermelon (97103) v1	cucwmB159
CsaV3_2G005340	MELO3C004254	Melon (DHL92) v3.5.1	cucmeB141
CsaV3_2G005340	ClCG02G015760	Watermelon (Charleston Gray)	cucwcgB137
CsaV3_2G005340	Lsi11G005520	Bottle gourd (USVL1VR-Ls)	cuclsiB108
CsaV3_2G005340	Cla97C02G041490	Watermelon (97103) v2	cucwmbB123
CsaV3_2G005340	BhiUN32G16	Wax gourd	cucwgoB222

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G005340	Cucurbita maxima (Rimu)	cmacucB0934
CsaV3_2G005340	Cucurbita moschata (Rifu)	cmocucB0924
CsaV3_2G005340	Melon (DHL92) v3.6.1	cucmedB134