CmaCh01G000040 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G000040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transmembrane protein, putative
Location	Cma_Chr01 : 12096 .. 12596 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAATTAGCAGTTCGTAGAGAGACTATTGAAGATGAAGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACCAAACAATATCGAAGAAACAGTAGGTAGGGTAATATCGGCATCGGCAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCCCCAAAAATAGAGTCAGTATATTCATATGCATATTTGGTTTCCTTTGCTTTACCTGCTTGTTTCTTACACATAATACGCGGCATGGTTGGGTCTCAGCTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGTGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAAACAGATTCAGAACTCTAG

mRNA sequence

TAAATTAGCAGTTCGTAGAGAGACTATTGAAGATGAAGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACCAAACAATATCGAAGAAACAGTAGGTAGGGTAATATCGGCATCGGCAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCCCCAAAAATAGACTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGTGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAAACAGATTCAGAACTCTAG

Coding sequence (CDS)

ATGAAGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACCAAACAATATCGAAGAAACAGTAGGTAGGGTAATATCGGCATCGGCAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCCCCAAAAATAGACTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGTGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAAACAGATTCAGAACTCTAG

Protein sequence

MKKKGGFVLVLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDSAKAAAQTLRPQTDSEL

Homology

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BLAST of CmaCh01G000040 vs. TrEMBL
Match: A0A0A0L904_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642710 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.1e-30
Identity = 82/132 (62.12%), Postives = 96/132 (72.73%), Query Frame = 1


Query: 2   KKKGGFVL-VLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRK 61
           KKK   VL +L+L ++V+VG+ KA+EEA NNI          S  S+P PPNSYWEEVRK
Sbjct: 5   KKKVKLVLRMLLLLLLVLVGIVKANEEAANNIY---------SETSTPNPPNSYWEEVRK 64

Query: 62  VVNRAVTCLFPPKIDFRPGKPVEDGQ----VNGNVNMKESITKSFHTTKQMVEDSAKAAA 121
           VVN+A T LFPPKIDFRPGK VED       NGNVN+KE++TKSF  TK+MVEDSAKAAA
Sbjct: 65  VVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAA 124

Query: 122 QTL-RPQTDSEL 128
           QTL +P   SEL
Sbjct: 125 QTLQKPPPHSEL 127

[Close]

BLAST of CmaCh01G000040 vs. TrEMBL
Match: V4L5U6_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10008985mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.7e-06
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 52  NSYWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDS 111
           NSYW ++++ + R  + LFPP IDFR GK  +D  +     MKE++T+SF  +K  VE +
Sbjct: 60  NSYWAKLKETLGRGHSRLFPPNIDFR-GK--DDASMGAGEKMKEAVTRSFENSKDTVEGA 119

Query: 112 AKAAAQ 118
           A++AA+
Sbjct: 120 ARSAAE 122

[Close]

BLAST of CmaCh01G000040 vs. TrEMBL
Match: A0A072UFS3_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g005500 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.7e-06
Identity = 43/133 (32.33%), Postives = 70/133 (52.63%), Query Frame = 1


Query: 2   KKKG--GFVLVLVLWMVVVVGVGKADEEAPNNIEETVG-------RVISASAASSPPPPN 61
           KK+G  G VLVL++ + +   +   + ++ N+ +++         R+ SA +  S   P 
Sbjct: 7   KKRGASGVVLVLLVLVFLSFSIANVNGDSVNDEDQSKKSAFWVWQRLRSAYSMYSSVFPT 66

Query: 62  S---YWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNV--NMKESITKSFHTTKQM 121
           S   YW  V+ +VN   T  FPP IDFR G+  E    N      +KE++ KS  T+K  
Sbjct: 67  SIGQYWHMVKAIVNHTYTYFFPPNIDFRRGEEGEAVVDNNGAGDKVKEALAKSLGTSKAT 126

[Close]

BLAST of CmaCh01G000040 vs. TAIR10
Match: AT1G16850.1 (AT1G16850.1 unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 3.5e-06
Identity = 25/67 (37.31%), Postives = 41/67 (61.19%), Query Frame = 1


Query: 53  SYWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDSA 112
           +YW +VR+ ++R  +  FPP   F  GK   D  +    NMKE+ T+SF  +K  VE++A
Sbjct: 60  NYWAKVRETLDRGQSHFFPPNTYFT-GK--NDAPMGAGENMKEAATRSFEHSKATVEEAA 119

Query: 113 KAAAQTL 120
           ++AA+ +
Sbjct: 120 RSAAEVV 123

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BLAST of CmaCh01G000040 vs. NCBI nr
Match: gi|449453350|ref|XP_004144421.1| (PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 7.3e-30
Identity = 82/132 (62.12%), Postives = 96/132 (72.73%), Query Frame = 1


Query: 2   KKKGGFVL-VLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRK 61
           KKK   VL +L+L ++V+VG+ KA+EEA NNI          S  S+P PPNSYWEEVRK
Sbjct: 5   KKKVKLVLRMLLLLLLVLVGIVKANEEAANNIY---------SETSTPNPPNSYWEEVRK 64

Query: 62  VVNRAVTCLFPPKIDFRPGKPVEDGQ----VNGNVNMKESITKSFHTTKQMVEDSAKAAA 121
           VVN+A T LFPPKIDFRPGK VED       NGNVN+KE++TKSF  TK+MVEDSAKAAA
Sbjct: 65  VVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAA 124

Query: 122 QTL-RPQTDSEL 128
           QTL +P   SEL
Sbjct: 125 QTLQKPPPHSEL 127

[Close]

BLAST of CmaCh01G000040 vs. NCBI nr
Match: gi|659120627|ref|XP_008460283.1| (PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 8.3e-26
Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 1


Query: 2   KKKGGFVL-VLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRK 61
           KKK   VL +L+L ++++VG+  A++EA NN+          S  S+P PPNSYWEEVRK
Sbjct: 6   KKKMKVVLRMLLLLLLILVGIAMANDEAANNVY---------SETSTPNPPNSYWEEVRK 65

Query: 62  VVNRAVTCLFPPKIDFRPGKPVED--GQVNGNVNMKESITKSFHTTKQMVEDSAKAAAQT 121
           VVN+A + LFPPKIDFRPGK VED  G    + N+KE++TKSF  TK+MVEDSAKAAAQT
Sbjct: 66  VVNKAYSYLFPPKIDFRPGKAVEDDSGLSVEDGNVKEAVTKSFEKTKEMVEDSAKAAAQT 125

Query: 122 L-RPQTDSEL 128
           L +P   SEL
Sbjct: 126 LQKPPPHSEL 126

[Close]

BLAST of CmaCh01G000040 vs. NCBI nr
Match: gi|567150889|ref|XP_006416770.1| (hypothetical protein EUTSA_v10008985mg [Eutrema salsugineum])

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-06
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 52  NSYWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDS 111
           NSYW ++++ + R  + LFPP IDFR GK  +D  +     MKE++T+SF  +K  VE +
Sbjct: 60  NSYWAKLKETLGRGHSRLFPPNIDFR-GK--DDASMGAGEKMKEAVTRSFENSKDTVEGA 119

Query: 112 AKAAAQ 118
           A++AA+
Sbjct: 120 ARSAAE 122

[Close]

BLAST of CmaCh01G000040 vs. NCBI nr
Match: gi|922364442|ref|XP_013454501.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-06
Identity = 43/133 (32.33%), Postives = 70/133 (52.63%), Query Frame = 1


Query: 2   KKKG--GFVLVLVLWMVVVVGVGKADEEAPNNIEETVG-------RVISASAASSPPPPN 61
           KK+G  G VLVL++ + +   +   + ++ N+ +++         R+ SA +  S   P 
Sbjct: 7   KKRGASGVVLVLLVLVFLSFSIANVNGDSVNDEDQSKKSAFWVWQRLRSAYSMYSSVFPT 66

Query: 62  S---YWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNV--NMKESITKSFHTTKQM 121
           S   YW  V+ +VN   T  FPP IDFR G+  E    N      +KE++ KS  T+K  
Sbjct: 67  SIGQYWHMVKAIVNHTYTYFFPPNIDFRRGEEGEAVVDNNGAGDKVKEALAKSLGTSKAT 126

The following BLAST results are available for this feature:

BLAST of CmaCh01G000040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh01G000040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L904_CUCSA	5.1e-30	62.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642710 PE=4 SV=1	[more]
V4L5U6_EUTSA	6.7e-06	42.42	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10008985mg PE=4 SV=1	[more]
A0A072UFS3_MEDTR	6.7e-06	32.33	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g005500 PE=4 SV=1	[more]

BLAST of CmaCh01G000040 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16850.1	3.5e-06	37.31	unknown protein	[more]

BLAST of CmaCh01G000040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453350\|ref\|XP_004144421.1\|	7.3e-30	62.12	PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus]	[more]
gi\|659120627\|ref\|XP_008460283.1\|	8.3e-26	56.92	PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo]	[more]
gi\|567150889\|ref\|XP_006416770.1\|	9.6e-06	42.42	hypothetical protein EUTSA_v10008985mg [Eutrema salsugineum]	[more]
gi\|922364442\|ref\|XP_013454501.1\|	9.6e-06	32.33	transmembrane protein, putative [Medicago truncatula]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G000040.1	CmaCh01G000040.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G000040	Cla012522	Watermelon (97103) v1	cmawmB430
CmaCh01G000040	Csa3G642710	Cucumber (Chinese Long) v2	cmacuB447
CmaCh01G000040	MELO3C022653	Melon (DHL92) v3.5.1	cmameB420
CmaCh01G000040	CSPI03G28220	Wild cucumber (PI 183967)	cmacpiB450
CmaCh01G000040	Cp4.1LG02g17480	Cucurbita pepo (Zucchini)	cmacpeB491
CmaCh01G000040	MELO3C022653.2	Melon (DHL92) v3.6.1	cmamedB483
CmaCh01G000040	CsaV3_3G030620	Cucumber (Chinese Long) v3	cmacucB0539
CmaCh01G000040	Cla97C07G141500	Watermelon (97103) v2	cmawmbB496
CmaCh01G000040	Bhi01G002251	Wax gourd	cmawgoB0561
CmaCh01G000040	CsGy3G026210	Cucumber (Gy14) v2	cgybcmaB362

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G000040	Cucurbita pepo (Zucchini)	cmacpeB493
CmaCh01G000040	Bottle gourd (USVL1VR-Ls)	cmalsiB450
CmaCh01G000040	Silver-seed gourd	carcmaB0278
CmaCh01G000040	Cucurbita maxima (Rimu)	cmacmaB254
CmaCh01G000040	Cucumber (Gy14) v1	cgycmaB0412
CmaCh01G000040	Cucurbita moschata (Rifu)	cmacmoB461
CmaCh01G000040	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G000040	Watermelon (Charleston Gray)	cmawcgB428