CSPI03G28220 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G28220
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transmembrane protein, putative
Location	Chr3 : 25846628 .. 25850055 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAAATCATACAAAAATATGTAATTGAACAAAAGAGTTTTTTTAATTATAAAAGTTTTCCTTGGTCAAATGTTGAAATGAAATTATAATCTTAAAAAAATGTCTTTTTGAACAAGCCGAATGTAAAACAATTTGTGTTTGTGTGTTGTTTCTTAGAGGGCAAGAAGAGTGGTGTTGTTGAAGATGATCAAGAAGACAATGAAAAAACAAATAGAAAGGGGACAGGTGCTCCAAAACCCAAAGCATATGGTGAGGTGTAAGAAAAGTAGAATATTTAAGTGTCCACCTTGCAATCTTCGAGGAACTTCCCCTCCCACCAGAAGCTAAAACCCCCCCATCTTGGCCTTCCTTTTTTACCCATAAACATAATTAGAAAAATCAACGGACAACAATGGAAATGGAGAAGAAGAAGGTGAAATTAGTATTAAGGATGCTGCTGTTACTGCTGCTTGTTCTTGTTGGTATTGTGAAGGCTAATGAAGAAGCAGCAAATAACATATATTCAGAAACATCAACACCAAATCCTCCAAACTCCTATTGGGAAGAAGTTCGAAAGGTGGTGAATAAAGCCTACACCTATCTGTTTCCTCCAAAAATAGAGTAAGTAATCTCCATTAATTTGGTTCCTGAACTCATTAATTAGTTACTAATAAAGGGGTTTGGGTTTTAGTTTCCGACCAGGAAAGGCTGTAGAAGATGATTCTGGAGTGAGTGTGAAGAATGGGAATGTTAATGTGAAGGACGCTGTTACAAAGAGCTTCGAAAAGACGAAAGAAATGGTGGAGGATTCCGCTAAAGCTGCCGCCCAAACGCTTCAAAAACCACCACCCCATTCCGAACTCTAGGAATACCAATTCCATCCCTTCCTCTTTCTTCTATAATTCTTGTAATGTCTTCTTGTTATTTGTTTGTTTTTGGTGAATGATGAATTATATGCTCTACAAGATTTAGATGTTTAAGGATGGGAATATGGAACTCTGCCACCACTCCAATGGATTGGGCTCCCATTTTAACCCATACATCATTCTCTCTCCATATATTTTAGTGTTTTTTTTCCTTTGGTC

mRNA sequence

ATGGAAATGGAGAAGAAGAAGGTGAAATTAGTATTAAGGATGCTGCTGTTACTGCTGCTTGTTCTTGTTGGTATTGTGAAGGCTAATGAAGAAGCAGCAAATAACATATATTCAGAAACATCAACACCAAATCCTCCAAACTCCTATTGGGAAGAAGTTCGAAAGGTGGTGAATAAAGCCTACACCTATCTGTTTCCTCCAAAAATAGATTTCCGACCAGGAAAGGCTGTAGAAGATGATTCTGGAGTGAGTGTGAAGAATGGGAATGTTAATGTGAAGGACGCTGTTACAAAGAGCTTCGAAAAGACGAAAGAAATGGTGGAGGATTCCGCTAAAGCTGCCGCCCAAACGCTTCAAAAACCACCACCCCATTCCGAACTCTAG

Coding sequence (CDS)

ATGGAAATGGAGAAGAAGAAGGTGAAATTAGTATTAAGGATGCTGCTGTTACTGCTGCTTGTTCTTGTTGGTATTGTGAAGGCTAATGAAGAAGCAGCAAATAACATATATTCAGAAACATCAACACCAAATCCTCCAAACTCCTATTGGGAAGAAGTTCGAAAGGTGGTGAATAAAGCCTACACCTATCTGTTTCCTCCAAAAATAGATTTCCGACCAGGAAAGGCTGTAGAAGATGATTCTGGAGTGAGTGTGAAGAATGGGAATGTTAATGTGAAGGACGCTGTTACAAAGAGCTTCGAAAAGACGAAAGAAATGGTGGAGGATTCCGCTAAAGCTGCCGCCCAAACGCTTCAAAAACCACCACCCCATTCCGAACTCTAG

Homology

[Close]

BLAST of CSPI03G28220 vs. TrEMBL
Match: A0A0A0L904_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642710 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 7.3e-61
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MEMEKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKA 60
           MEMEKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKA
Sbjct: 1   MEMEKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKA 60

Query: 61  YTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKDAVTKSFEKTKEMVEDSAKAAAQTLQK 120
           YTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVK+AVTKSFEKTKEMVEDSAKAAAQTLQK
Sbjct: 61  YTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQK 120

Query: 121 PPPHSEL 128
           PPPHSEL
Sbjct: 121 PPPHSEL 127

[Close]

BLAST of CSPI03G28220 vs. TrEMBL
Match: A0A072UFS3_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g005500 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-07
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 1


Query: 32  AANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFR---PGKAVEDDSGVSVKNG 91
           +A ++YS    P     YW  V+ +VN  YTY FPP IDFR    G+AV D++G   K  
Sbjct: 55  SAYSMYSSVF-PTSIGQYWHMVKAIVNHTYTYFFPPNIDFRRGEEGEAVVDNNGAGDK-- 114

Query: 92  NVNVKDAVTKSFEKTKEMVEDSAKAAAQTLQK 121
              VK+A+ KS   +K  +ED+AK+AA  +++
Sbjct: 115 ---VKEALAKSLGTSKATLEDAAKSAADKVKR 140

[Close]

BLAST of CSPI03G28220 vs. TrEMBL
Match: A0A067DQX8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030839mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.7e-06
Identity = 33/89 (37.08%), Postives = 51/89 (57.30%), Query Frame = 1


Query: 36  IYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKDA 95
           +Y+  S  +  +SYW +++  +N+A  Y FPP +DFR      +   +   +G   VK A
Sbjct: 70  LYTSASPLSTSSSYWGKLKAFLNQAQAYFFPPNLDFRGSN--NEAGAIKNPSGGEKVKAA 129

Query: 96  VTKSFEKTKEMVEDSAKAAAQ----TLQK 121
           V KS E++KE VE SA+ AA+    T+QK
Sbjct: 130 VAKSTERSKETVEQSAQTAAEIAGKTMQK 156

[Close]

BLAST of CSPI03G28220 vs. NCBI nr
Match: gi|449453350|ref|XP_004144421.1| (PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 1.0e-60
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MEMEKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKA 60
           MEMEKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKA
Sbjct: 1   MEMEKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKA 60

Query: 61  YTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKDAVTKSFEKTKEMVEDSAKAAAQTLQK 120
           YTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVK+AVTKSFEKTKEMVEDSAKAAAQTLQK
Sbjct: 61  YTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQK 120

Query: 121 PPPHSEL 128
           PPPHSEL
Sbjct: 121 PPPHSEL 127

[Close]

BLAST of CSPI03G28220 vs. NCBI nr
Match: gi|659120627|ref|XP_008460283.1| (PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 2.3e-52
Identity = 113/128 (88.28%), Postives = 123/128 (96.09%), Query Frame = 1


Query: 1   MEM-EKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNK 60
           MEM EKKK+K+VLRMLLLLLL+LVGI  AN+EAANN+YSETSTPNPPNSYWEEVRKVVNK
Sbjct: 1   MEMEEKKKMKVVLRMLLLLLLILVGIAMANDEAANNVYSETSTPNPPNSYWEEVRKVVNK 60

Query: 61  AYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKDAVTKSFEKTKEMVEDSAKAAAQTLQ 120
           AY+YLFPPKIDFRPGKAVEDDSG+SV++G  NVK+AVTKSFEKTKEMVEDSAKAAAQTLQ
Sbjct: 61  AYSYLFPPKIDFRPGKAVEDDSGLSVEDG--NVKEAVTKSFEKTKEMVEDSAKAAAQTLQ 120

Query: 121 KPPPHSEL 128
           KPPPHSEL
Sbjct: 121 KPPPHSEL 126

[Close]

BLAST of CSPI03G28220 vs. NCBI nr
Match: gi|1012104599|ref|XP_015958310.1| (PREDICTED: uncharacterized protein LOC107482379 [Arachis duranensis])

HSP 1 Score: 65.5 bits (158), Expect = 7.9e-08
Identity = 39/87 (44.83%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 33  ANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNV 92
           A NIYSE  T      YW   + + N AYT LFPP IDFR G  V D  G   +     V
Sbjct: 52  AYNIYSELFTTRV-TQYWGFFKALANDAYTRLFPPNIDFRSGGGVGDKEG---EGAGEKV 111

Query: 93  KDAVTKSFEKTKEMVEDSAKAAAQTLQ 120
           K+AV KS   +K+ VED+AK+AA+ ++
Sbjct: 112 KEAVAKSLGSSKDTVEDAAKSAAEKVK 134

[Close]

BLAST of CSPI03G28220 vs. NCBI nr
Match: gi|502149507|ref|XP_004507555.1| (PREDICTED: uncharacterized protein LOC101512441 isoform X2 [Cicer arietinum])

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-07
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 32  AANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPG---KAVEDDSGVSVKNG 91
           +A +IYS    P   + YW  V+ +VN  Y Y FPP IDFR G   + V D++G   K  
Sbjct: 50  SAYSIYSSIFLPTSVSQYWNMVKGLVNHTYAYFFPPNIDFRRGDGAEVVADENGACEK-- 109

Query: 92  NVNVKDAVTKSFEKTKEMVEDSAKAAA 116
              VK+A+ KS   +K  +ED+AK+AA
Sbjct: 110 ---VKEAIVKSIGTSKATLEDAAKSAA 131

[Close]

BLAST of CSPI03G28220 vs. NCBI nr
Match: gi|922364442|ref|XP_013454501.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 62.4 bits (150), Expect = 6.7e-07
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 1


Query: 32  AANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFR---PGKAVEDDSGVSVKNG 91
           +A ++YS    P     YW  V+ +VN  YTY FPP IDFR    G+AV D++G   K  
Sbjct: 55  SAYSMYSSVF-PTSIGQYWHMVKAIVNHTYTYFFPPNIDFRRGEEGEAVVDNNGAGDK-- 114

Query: 92  NVNVKDAVTKSFEKTKEMVEDSAKAAAQTLQK 121
              VK+A+ KS   +K  +ED+AK+AA  +++
Sbjct: 115 ---VKEALAKSLGTSKATLEDAAKSAADKVKR 140

The following BLAST results are available for this feature:

BLAST of CSPI03G28220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G28220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L904_CUCSA	7.3e-61	99.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642710 PE=4 SV=1	[more]
A0A072UFS3_MEDTR	4.7e-07	40.22	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g005500 PE=4 SV=1	[more]
A0A067DQX8_CITSI	6.7e-06	37.08	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030839mg PE=4 SV=1	[more]

BLAST of CSPI03G28220 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G28220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453350\|ref\|XP_004144421.1\|	1.0e-60	99.21	PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus]	[more]
gi\|659120627\|ref\|XP_008460283.1\|	2.3e-52	88.28	PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo]	[more]
gi\|1012104599\|ref\|XP_015958310.1\|	7.9e-08	44.83	PREDICTED: uncharacterized protein LOC107482379 [Arachis duranensis]	[more]
gi\|502149507\|ref\|XP_004507555.1\|	2.3e-07	41.38	PREDICTED: uncharacterized protein LOC101512441 isoform X2 [Cicer arietinum]	[more]
gi\|922364442\|ref\|XP_013454501.1\|	6.7e-07	40.22	transmembrane protein, putative [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G28220.2	CSPI03G28220.2	mRNA
CSPI03G28220.1	CSPI03G28220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35463	FAMILY NOT NAMED	coord: 46..117 score: 4.1
None	No IPR available	PANTHER	PTHR35463:SF1	SUBFAMILY NOT NAMED	coord: 46..117 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G28220	Cla012522	Watermelon (97103) v1	cpiwmB216
CSPI03G28220	Csa3G642710	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G28220	MELO3C022653	Melon (DHL92) v3.5.1	cpimeB202
CSPI03G28220	MELO3C022653.2	Melon (DHL92) v3.6.1	cpimedB196
CSPI03G28220	CsaV3_3G030620	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G28220	Cla97C07G141500	Watermelon (97103) v2	cpiwmbB248
CSPI03G28220	Bhi01G002251	Wax gourd	cpiwgoB276
CSPI03G28220	CmaCh01G000040	Cucurbita maxima (Rimu)	cmacpiB450
CSPI03G28220	Cp4.1LG02g17480	Cucurbita pepo (Zucchini)	cpecpiB561
CSPI03G28220	CsGy3G026210	Cucumber (Gy14) v2	cgybcpiB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G28220	Cucumber (Gy14) v1	cgycpiB221
CSPI03G28220	Cucurbita maxima (Rimu)	cmacpiB245
CSPI03G28220	Cucurbita moschata (Rifu)	cmocpiB234
CSPI03G28220	Cucurbita moschata (Rifu)	cmocpiB438
CSPI03G28220	Watermelon (Charleston Gray)	cpiwcgB262
CSPI03G28220	Cucurbita pepo (Zucchini)	cpecpiB603
CSPI03G28220	Bottle gourd (USVL1VR-Ls)	cpilsiB232
CSPI03G28220	Silver-seed gourd	carcpiB0230