Csa3G642710 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G642710
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 25173420 .. 25174253 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAGACAATGAAAAAACAAATAGAAAGGGGACAGGTGCTCCAAAACCCAAAGCATATGGTGAGGTGTAAGAAAAGTAGAATATTTAAGTGTCCACCTTGCAATCTTCGAGGAACTTCCCCTCCCACCAGAAGCTAAAACCCCCCCCCATCTTGGCCTTCCTTTTTTACCCATAAACATAATTAGAAAAATCAACGGACAACAATGGAAATGGAGAAGAAGAAGGTGAAATTAGTATTAAGGATGCTGCTGTTACTGCTGCTTGTTCTTGTTGGTATTGTGAAGGCTAATGAAGAAGCAGCAAATAACATATATTCAGAAACATCAACACCAAATCCTCCAAACTCCTATTGGGAAGAAGTTCGAAAGGTGGTGAATAAAGCCTACACCTATCTGTTTCCTCCAAAAATAGAGTAAGTAATCTCCATTAATTTGGTTCCTGAACTCATTAATTAGTTACTAATAAAGGGGTTTGGGTTTTAGTTTCCGACCAGGAAAGGCTGTAGAAGATGATTCTGGAGTGAGTGTGAAGAATGGGAATGTTAATGTGAAGGAAGCTGTTACAAAGAGCTTCGAAAAGACGAAAGAAATGGTGGAGGATTCCGCTAAAGCTGCCGCCCAAACGCTTCAAAAACCACCACCCCATTCCGAACTCTAGGAATACCAATTCCATCCCTTCCTCTTTCTTCTATAATTCTTGTAATGTCTTCTTGTTATTTGTTTGTTTTTGGTGAATGATGAATTATATGCTCTACAAGATTTAGATGTTTAAGGATGGGAATATGGAACTCTGCCACCTTGGGCTCCCATTTTAACCCATACATCATTCTCTCT

mRNA sequence

ATGGAAATGGAGAAGAAGAAGGTGAAATTAGTATTAAGGATGCTGCTGTTACTGCTGCTTGTTCTTGTTGGTATTGTGAAGGCTAATGAAGAAGCAGCAAATAACATATATTCAGAAACATCAACACCAAATCCTCCAAACTCCTATTGGGAAGAAGTTCGAAAGGTGGTGAATAAAGCCTACACCTATCTGTTTCCTCCAAAAATAGATTTCCGACCAGGAAAGGCTGTAGAAGATGATTCTGGAGTGAGTGTGAAGAATGGGAATGTTAATGTGAAGGAAGCTGTTACAAAGAGCTTCGAAAAGACGAAAGAAATGGTGGAGGATTCCGCTAAAGCTGCCGCCCAAACGCTTCAAAAACCACCACCCCATTCCGAACTCTAG

Coding sequence (CDS)

ATGGAAATGGAGAAGAAGAAGGTGAAATTAGTATTAAGGATGCTGCTGTTACTGCTGCTTGTTCTTGTTGGTATTGTGAAGGCTAATGAAGAAGCAGCAAATAACATATATTCAGAAACATCAACACCAAATCCTCCAAACTCCTATTGGGAAGAAGTTCGAAAGGTGGTGAATAAAGCCTACACCTATCTGTTTCCTCCAAAAATAGATTTCCGACCAGGAAAGGCTGTAGAAGATGATTCTGGAGTGAGTGTGAAGAATGGGAATGTTAATGTGAAGGAAGCTGTTACAAAGAGCTTCGAAAAGACGAAAGAAATGGTGGAGGATTCCGCTAAAGCTGCCGCCCAAACGCTTCAAAAACCACCACCCCATTCCGAACTCTAG

Protein sequence

MEMEKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL*

Homology

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BLAST of Csa3G642710 vs. TrEMBL
Match: A0A0A0L904_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642710 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.1e-64
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MEMEKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKA 60
           MEMEKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKA
Sbjct: 1   MEMEKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKA 60

Query: 61  YTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQK 120
           YTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQK
Sbjct: 61  YTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQK 120

Query: 121 PPPHSEL 128
           PPPHSEL
Sbjct: 121 PPPHSEL 127

[Close]

BLAST of Csa3G642710 vs. TrEMBL
Match: A0A072UFS3_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g005500 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-08
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 1


Query: 32  AANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFR---PGKAVEDDSGVSVKNG 91
           +A ++YS    P     YW  V+ +VN  YTY FPP IDFR    G+AV D++G   K  
Sbjct: 55  SAYSMYSSVF-PTSIGQYWHMVKAIVNHTYTYFFPPNIDFRRGEEGEAVVDNNGAGDK-- 114

Query: 92  NVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQK 121
              VKEA+ KS   +K  +ED+AK+AA  +++
Sbjct: 115 ---VKEALAKSLGTSKATLEDAAKSAADKVKR 140

[Close]

BLAST of Csa3G642710 vs. TrEMBL
Match: A0A067DQX8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030839mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.9e-07
Identity = 33/89 (37.08%), Postives = 51/89 (57.30%), Query Frame = 1


Query: 36  IYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEA 95
           +Y+  S  +  +SYW +++  +N+A  Y FPP +DFR      +   +   +G   VK A
Sbjct: 70  LYTSASPLSTSSSYWGKLKAFLNQAQAYFFPPNLDFRGSN--NEAGAIKNPSGGEKVKAA 129

Query: 96  VTKSFEKTKEMVEDSAKAAAQ----TLQK 121
           V KS E++KE VE SA+ AA+    T+QK
Sbjct: 130 VAKSTERSKETVEQSAQTAAEIAGKTMQK 156

[Close]

BLAST of Csa3G642710 vs. TrEMBL
Match: A0A072UQK5_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g094508 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-06
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 1


Query: 35  NIYSETSTPNPPN--SYWEEVRKVVNKAYTYLFPPKID-FRPGKAVEDDSGVSVKNGNVN 94
           N YS  S+  P N   YW  V+ +VN  Y Y FPP ++    G+AV D++G   K     
Sbjct: 52  NAYSMYSSVFPTNIGQYWHMVKAIVNHTYAYFFPPNLERGEEGEAVVDNNGAGDK----- 111

Query: 95  VKEAVTKSFEKTKEMVEDSAKAAAQTLQK 121
           VKEA+ KS   +K  +ED+AK+AA  +++
Sbjct: 112 VKEALAKSLGTSKATLEDAAKSAADKVKR 135

[Close]

BLAST of Csa3G642710 vs. TrEMBL
Match: M4EB63_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.8e-06
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 1


Query: 47  NSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEM 106
           N YW ++++ + + ++  FPP IDFR GK    D G   K     +KEAVT+SFE +K+ 
Sbjct: 53  NDYWSKLKETLGRGHSRFFPPNIDFR-GKDDAADMGTGEK-----MKEAVTRSFEHSKDT 112

Query: 107 VEDSAKAAAQ 117
           VE++A++AA+
Sbjct: 113 VEEAARSAAE 116

[Close]

BLAST of Csa3G642710 vs. TAIR10
Match: AT5G64820.1 (AT5G64820.1 unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 5.4e-07
Identity = 31/114 (27.19%), Postives = 55/114 (48.25%), Query Frame = 1


Query: 18  LLLVLVGIVKANEEAANNIYSETSTPN-------------PPNSYWEEVRKVVNKAYTYL 77
           ++++L+  V A+   +++   +   P+             PP+S WE ++  + K    L
Sbjct: 16  IIIILISGVSADGAESDSAAKKEENPSIVKIISGIFGNKFPPSS-WELIQGAMQKIQMKL 75

Query: 78  FPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTL 119
           +PP +DFR      D S +  ++    V+EA T+S E +KE +E+SAK A   +
Sbjct: 76  YPPNLDFRSNS---DKSNIEEEDKAEKVREAATRSLEVSKEAIEESAKLAGDVV 125

[Close]

BLAST of Csa3G642710 vs. TAIR10
Match: AT1G16850.1 (AT1G16850.1 unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 6.0e-06
Identity = 32/117 (27.35%), Postives = 54/117 (46.15%), Query Frame = 1


Query: 10  LVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPN--------PPNSYWEEVRKVVNKAY 69
           L +  +   L VL   V A+ ++   + SE  T             +YW +VR+ +++  
Sbjct: 14  LCIFSIFFFLFVLSVNVSADVDSERAVPSEDKTTTVWLTKIKRSGKNYWAKVRETLDRGQ 73

Query: 70  TYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTL 119
           ++ FPP   F         +G        N+KEA T+SFE +K  VE++A++AA+ +
Sbjct: 74  SHFFPPNTYFTGKNDAPMGAGE-------NMKEAATRSFEHSKATVEEAARSAAEVV 123

[Close]

BLAST of Csa3G642710 vs. NCBI nr
Match: gi|449453350|ref|XP_004144421.1| (PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus])

HSP 1 Score: 251.9 bits (642), Expect = 5.9e-64
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MEMEKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKA 60
           MEMEKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKA
Sbjct: 1   MEMEKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKA 60

Query: 61  YTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQK 120
           YTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQK
Sbjct: 61  YTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQK 120

Query: 121 PPPHSEL 128
           PPPHSEL
Sbjct: 121 PPPHSEL 127

[Close]

BLAST of Csa3G642710 vs. NCBI nr
Match: gi|659120627|ref|XP_008460283.1| (PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo])

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-55
Identity = 114/128 (89.06%), Postives = 123/128 (96.09%), Query Frame = 1


Query: 1   MEM-EKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNK 60
           MEM EKKK+K+VLRMLLLLLL+LVGI  AN+EAANN+YSETSTPNPPNSYWEEVRKVVNK
Sbjct: 1   MEMEEKKKMKVVLRMLLLLLLILVGIAMANDEAANNVYSETSTPNPPNSYWEEVRKVVNK 60

Query: 61  AYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQ 120
           AY+YLFPPKIDFRPGKAVEDDSG+SV++G  NVKEAVTKSFEKTKEMVEDSAKAAAQTLQ
Sbjct: 61  AYSYLFPPKIDFRPGKAVEDDSGLSVEDG--NVKEAVTKSFEKTKEMVEDSAKAAAQTLQ 120

Query: 121 KPPPHSEL 128
           KPPPHSEL
Sbjct: 121 KPPPHSEL 126

[Close]

BLAST of Csa3G642710 vs. NCBI nr
Match: gi|1012104599|ref|XP_015958310.1| (PREDICTED: uncharacterized protein LOC107482379 [Arachis duranensis])

HSP 1 Score: 68.9 bits (167), Expect = 7.1e-09
Identity = 40/87 (45.98%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 33  ANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNV 92
           A NIYSE  T      YW   + + N AYT LFPP IDFR G  V D  G   +     V
Sbjct: 52  AYNIYSELFTTRV-TQYWGFFKALANDAYTRLFPPNIDFRSGGGVGDKEG---EGAGEKV 111

Query: 93  KEAVTKSFEKTKEMVEDSAKAAAQTLQ 120
           KEAV KS   +K+ VED+AK+AA+ ++
Sbjct: 112 KEAVAKSLGSSKDTVEDAAKSAAEKVK 134

[Close]

BLAST of Csa3G642710 vs. NCBI nr
Match: gi|1021507550|ref|XP_016197100.1| (PREDICTED: uncharacterized protein LOC107638379 [Arachis ipaensis])

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-08
Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 1


Query: 8   VKLVLRMLLLLLLVLVGIVKANEEA----------------ANNIYSETSTPNPPNSYWE 67
           +K+ +R++ +L+ +    +  NEE                 A NIYS   T +    YW 
Sbjct: 3   IKIKVRLVCILVFLCSTCLANNEEHNKKQKQCLWKWQRPRDAYNIYSAFFTTSV-TQYWG 62

Query: 68  EVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSA 120
             + + N AYT LFPP IDFR G  V D  G   +     VKEAV KS   +K+ VED+A
Sbjct: 63  FFKALANDAYTRLFPPNIDFRSGGGVGDKEG---EGAGEKVKEAVAKSLGSSKDAVEDAA 122

[Close]

BLAST of Csa3G642710 vs. NCBI nr
Match: gi|502149507|ref|XP_004507555.1| (PREDICTED: uncharacterized protein LOC101512441 isoform X2 [Cicer arietinum])

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-08
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 32  AANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPG---KAVEDDSGVSVKNG 91
           +A +IYS    P   + YW  V+ +VN  Y Y FPP IDFR G   + V D++G   K  
Sbjct: 50  SAYSIYSSIFLPTSVSQYWNMVKGLVNHTYAYFFPPNIDFRRGDGAEVVADENGACEK-- 109

Query: 92  NVNVKEAVTKSFEKTKEMVEDSAKAAA 116
              VKEA+ KS   +K  +ED+AK+AA
Sbjct: 110 ---VKEAIVKSIGTSKATLEDAAKSAA 131

The following BLAST results are available for this feature:

BLAST of Csa3G642710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L904_CUCSA	4.1e-64	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642710 PE=4 SV=1	[more]
A0A072UFS3_MEDTR	4.2e-08	41.30	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g005500 PE=4 SV=1	[more]
A0A067DQX8_CITSI	7.9e-07	37.08	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030839mg PE=4 SV=1	[more]
A0A072UQK5_MEDTR	3.9e-06	39.33	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g094508 PE=4 SV=1	[more]
M4EB63_BRARP	8.8e-06	41.43	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]

BLAST of Csa3G642710 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64820.1	5.4e-07	27.19	unknown protein	[more]
AT1G16850.1	6.0e-06	27.35	unknown protein	[more]

BLAST of Csa3G642710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453350\|ref\|XP_004144421.1\|	5.9e-64	100.00	PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus]	[more]
gi\|659120627\|ref\|XP_008460283.1\|	1.3e-55	89.06	PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo]	[more]
gi\|1012104599\|ref\|XP_015958310.1\|	7.1e-09	45.98	PREDICTED: uncharacterized protein LOC107482379 [Arachis duranensis]	[more]
gi\|1021507550\|ref\|XP_016197100.1\|	1.6e-08	35.16	PREDICTED: uncharacterized protein LOC107638379 [Arachis ipaensis]	[more]
gi\|502149507\|ref\|XP_004507555.1\|	2.7e-08	42.53	PREDICTED: uncharacterized protein LOC101512441 isoform X2 [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G642710.1	Csa3G642710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35463	FAMILY NOT NAMED	coord: 46..117 score: 2.2
None	No IPR available	PANTHER	PTHR35463:SF1	SUBFAMILY NOT NAMED	coord: 46..117 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G642710	Cla012522	Watermelon (97103) v1	cuwmB218
Csa3G642710	MELO3C022653	Melon (DHL92) v3.5.1	cumeB209
Csa3G642710	MELO3C022653.2	Melon (DHL92) v3.6.1	cumedB195
Csa3G642710	Cla97C07G141500	Watermelon (97103) v2	cuwmbB239
Csa3G642710	Bhi01G002251	Wax gourd	cuwgoB276
Csa3G642710	CSPI03G28220	Wild cucumber (PI 183967)	cpicuB120
Csa3G642710	CmaCh01G000040	Cucurbita maxima (Rimu)	cmacuB447
Csa3G642710	Cp4.1LG02g17480	Cucurbita pepo (Zucchini)	cpecuB559
Csa3G642710	CsGy3G026210	Cucumber (Gy14) v2	cgybcuB111

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G642710	Silver-seed gourd	carcuB0223
Csa3G642710	Cucumber (Gy14) v1	cgycuB216
Csa3G642710	Cucurbita maxima (Rimu)	cmacuB243
Csa3G642710	Cucurbita moschata (Rifu)	cmocuB230
Csa3G642710	Cucurbita moschata (Rifu)	cmocuB434
Csa3G642710	Watermelon (Charleston Gray)	cuwcgB253
Csa3G642710	Cucurbita pepo (Zucchini)	cpecuB601
Csa3G642710	Bottle gourd (USVL1VR-Ls)	culsiB233