CmaCh01G000040 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G000040
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTransmembrane protein, putative
LocationCma_Chr01 : 12096 .. 12596 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAATTAGCAGTTCGTAGAGAGACTATTGAAGATGAAGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACCAAACAATATCGAAGAAACAGTAGGTAGGGTAATATCGGCATCGGCAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCCCCAAAAATAGAGTCAGTATATTCATATGCATATTTGGTTTCCTTTGCTTTACCTGCTTGTTTCTTACACATAATACGCGGCATGGTTGGGTCTCAGCTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGTGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAAACAGATTCAGAACTCTAG

mRNA sequence

TAAATTAGCAGTTCGTAGAGAGACTATTGAAGATGAAGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACCAAACAATATCGAAGAAACAGTAGGTAGGGTAATATCGGCATCGGCAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCCCCAAAAATAGACTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGTGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAAACAGATTCAGAACTCTAG

Coding sequence (CDS)

ATGAAGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACCAAACAATATCGAAGAAACAGTAGGTAGGGTAATATCGGCATCGGCAGCATCCTCTCCTCCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCCCCAAAAATAGACTTCCGACCAGGAAAACCGGTGGAAGATGGACAAGTGAACGGGAATGTGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCGACCACAAACAGATTCAGAACTCTAG

Protein sequence

MKKKGGFVLVLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDSAKAAAQTLRPQTDSEL
Homology
[Close]
BLAST of CmaCh01G000040 vs. TrEMBL
Match: A0A0A0L904_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642710 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.1e-30
Identity = 82/132 (62.12%), Postives = 96/132 (72.73%), Query Frame = 1 

Query: 2   KKKGGFVL-VLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRK 61
           KKK   VL +L+L ++V+VG+ KA+EEA NNI          S  S+P PPNSYWEEVRK
Sbjct: 5   KKKVKLVLRMLLLLLLVLVGIVKANEEAANNIY---------SETSTPNPPNSYWEEVRK 64

Query: 62  VVNRAVTCLFPPKIDFRPGKPVEDGQ----VNGNVNMKESITKSFHTTKQMVEDSAKAAA 121
           VVN+A T LFPPKIDFRPGK VED       NGNVN+KE++TKSF  TK+MVEDSAKAAA
Sbjct: 65  VVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAA 124

Query: 122 QTL-RPQTDSEL 128
           QTL +P   SEL
Sbjct: 125 QTLQKPPPHSEL 127

[Close]
BLAST of CmaCh01G000040 vs. TrEMBL
Match: V4L5U6_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10008985mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.7e-06
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 52  NSYWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDS 111
           NSYW ++++ + R  + LFPP IDFR GK  +D  +     MKE++T+SF  +K  VE +
Sbjct: 60  NSYWAKLKETLGRGHSRLFPPNIDFR-GK--DDASMGAGEKMKEAVTRSFENSKDTVEGA 119

Query: 112 AKAAAQ 118
           A++AA+
Sbjct: 120 ARSAAE 122

[Close]
BLAST of CmaCh01G000040 vs. TrEMBL
Match: A0A072UFS3_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g005500 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.7e-06
Identity = 43/133 (32.33%), Postives = 70/133 (52.63%), Query Frame = 1 

Query: 2   KKKG--GFVLVLVLWMVVVVGVGKADEEAPNNIEETVG-------RVISASAASSPPPPN 61
           KK+G  G VLVL++ + +   +   + ++ N+ +++         R+ SA +  S   P 
Sbjct: 7   KKRGASGVVLVLLVLVFLSFSIANVNGDSVNDEDQSKKSAFWVWQRLRSAYSMYSSVFPT 66

Query: 62  S---YWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNV--NMKESITKSFHTTKQM 121
           S   YW  V+ +VN   T  FPP IDFR G+  E    N      +KE++ KS  T+K  
Sbjct: 67  SIGQYWHMVKAIVNHTYTYFFPPNIDFRRGEEGEAVVDNNGAGDKVKEALAKSLGTSKAT 126

[Close]
BLAST of CmaCh01G000040 vs. TAIR10
Match: AT1G16850.1 (AT1G16850.1 unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 3.5e-06
Identity = 25/67 (37.31%), Postives = 41/67 (61.19%), Query Frame = 1 

Query: 53  SYWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDSA 112
           +YW +VR+ ++R  +  FPP   F  GK   D  +    NMKE+ T+SF  +K  VE++A
Sbjct: 60  NYWAKVRETLDRGQSHFFPPNTYFT-GK--NDAPMGAGENMKEAATRSFEHSKATVEEAA 119

Query: 113 KAAAQTL 120
           ++AA+ +
Sbjct: 120 RSAAEVV 123

[Close]
BLAST of CmaCh01G000040 vs. NCBI nr
Match: gi|449453350|ref|XP_004144421.1| (PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 7.3e-30
Identity = 82/132 (62.12%), Postives = 96/132 (72.73%), Query Frame = 1 

Query: 2   KKKGGFVL-VLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRK 61
           KKK   VL +L+L ++V+VG+ KA+EEA NNI          S  S+P PPNSYWEEVRK
Sbjct: 5   KKKVKLVLRMLLLLLLVLVGIVKANEEAANNIY---------SETSTPNPPNSYWEEVRK 64

Query: 62  VVNRAVTCLFPPKIDFRPGKPVEDGQ----VNGNVNMKESITKSFHTTKQMVEDSAKAAA 121
           VVN+A T LFPPKIDFRPGK VED       NGNVN+KE++TKSF  TK+MVEDSAKAAA
Sbjct: 65  VVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAA 124

Query: 122 QTL-RPQTDSEL 128
           QTL +P   SEL
Sbjct: 125 QTLQKPPPHSEL 127

[Close]
BLAST of CmaCh01G000040 vs. NCBI nr
Match: gi|659120627|ref|XP_008460283.1| (PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 8.3e-26
Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 1 

Query: 2   KKKGGFVL-VLVLWMVVVVGVGKADEEAPNNIEETVGRVISASAASSPPPPNSYWEEVRK 61
           KKK   VL +L+L ++++VG+  A++EA NN+          S  S+P PPNSYWEEVRK
Sbjct: 6   KKKMKVVLRMLLLLLLILVGIAMANDEAANNVY---------SETSTPNPPNSYWEEVRK 65

Query: 62  VVNRAVTCLFPPKIDFRPGKPVED--GQVNGNVNMKESITKSFHTTKQMVEDSAKAAAQT 121
           VVN+A + LFPPKIDFRPGK VED  G    + N+KE++TKSF  TK+MVEDSAKAAAQT
Sbjct: 66  VVNKAYSYLFPPKIDFRPGKAVEDDSGLSVEDGNVKEAVTKSFEKTKEMVEDSAKAAAQT 125

Query: 122 L-RPQTDSEL 128
           L +P   SEL
Sbjct: 126 LQKPPPHSEL 126

[Close]
BLAST of CmaCh01G000040 vs. NCBI nr
Match: gi|567150889|ref|XP_006416770.1| (hypothetical protein EUTSA_v10008985mg [Eutrema salsugineum])

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-06
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 52  NSYWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNVNMKESITKSFHTTKQMVEDS 111
           NSYW ++++ + R  + LFPP IDFR GK  +D  +     MKE++T+SF  +K  VE +
Sbjct: 60  NSYWAKLKETLGRGHSRLFPPNIDFR-GK--DDASMGAGEKMKEAVTRSFENSKDTVEGA 119

Query: 112 AKAAAQ 118
           A++AA+
Sbjct: 120 ARSAAE 122

[Close]
BLAST of CmaCh01G000040 vs. NCBI nr
Match: gi|922364442|ref|XP_013454501.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-06
Identity = 43/133 (32.33%), Postives = 70/133 (52.63%), Query Frame = 1 

Query: 2   KKKG--GFVLVLVLWMVVVVGVGKADEEAPNNIEETVG-------RVISASAASSPPPPN 61
           KK+G  G VLVL++ + +   +   + ++ N+ +++         R+ SA +  S   P 
Sbjct: 7   KKRGASGVVLVLLVLVFLSFSIANVNGDSVNDEDQSKKSAFWVWQRLRSAYSMYSSVFPT 66

Query: 62  S---YWEEVRKVVNRAVTCLFPPKIDFRPGKPVEDGQVNGNV--NMKESITKSFHTTKQM 121
           S   YW  V+ +VN   T  FPP IDFR G+  E    N      +KE++ KS  T+K  
Sbjct: 67  SIGQYWHMVKAIVNHTYTYFFPPNIDFRRGEEGEAVVDNNGAGDKVKEALAKSLGTSKAT 126

The following BLAST results are available for this feature:
BLAST of CmaCh01G000040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh01G000040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L904_CUCSA5.1e-3062.12Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642710 PE=4 SV=1[more]
V4L5U6_EUTSA6.7e-0642.42Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10008985mg PE=4 SV=1[more]
A0A072UFS3_MEDTR6.7e-0632.33Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g005500 PE=4 SV=1[more]
BLAST of CmaCh01G000040 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G16850.13.5e-0637.31 unknown protein[more]
BLAST of CmaCh01G000040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453350|ref|XP_004144421.1|7.3e-3062.12PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus][more]
gi|659120627|ref|XP_008460283.1|8.3e-2656.92PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo][more]
gi|567150889|ref|XP_006416770.1|9.6e-0642.42hypothetical protein EUTSA_v10008985mg [Eutrema salsugineum][more]
gi|922364442|ref|XP_013454501.1|9.6e-0632.33transmembrane protein, putative [Medicago truncatula][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G000040.1CmaCh01G000040.1mRNA