CsaV3_3G030620 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G030620
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTransmembrane protein, putative
Locationchr3 : 26424266 .. 26424719 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGGAGAAGAAGAAGGTGAAATTAGTATTAAGGATGCTGCTGTTACTGCTGCTTGTTCTTGTTGGTATTGTGAAGGCTAATGAAGAAGCAGCAAATAACATATATTCAGAAACATCAACACCAAATCCTCCAAACTCCTATTGGGAAGAAGTTCGAAAGGTGGTGAATAAAGCCTACACCTATCTGTTTCCTCCAAAAATAGAGTAAGTAATCTCCATTAATTTGGTTCCTGAACTCATTAATTAGTTACTAATAAAGGGGTTTGGGTTTTAGTTTCCGACCAGGAAAGGCTGTAGAAGATGATTCTGGAGTGAGTGTGAAGAATGGGAATGTTAATGTGAAGGAAGCTGTTACAAAGAGCTTCGAAAAGACGAAAGAAATGGTGGAGGATTCCGCTAAAGCTGCCGCCCAAACGCTTCAAAAACCACCACCCCATTCCGAACTCTAG

mRNA sequence

ATGGAAATGGAGAAGAAGAAGGTGAAATTAGTATTAAGGATGCTGCTGTTACTGCTGCTTGTTCTTGTTGGTATTGTGAAGGCTAATGAAGAAGCAGCAAATAACATATATTCAGAAACATCAACACCAAATCCTCCAAACTCCTATTGGGAAGAAGTTCGAAAGGTGGTGAATAAAGCCTACACCTATCTGTTTCCTCCAAAAATAGATTTCCGACCAGGAAAGGCTGTAGAAGATGATTCTGGAGTGAGTGTGAAGAATGGGAATGTTAATGTGAAGGAAGCTGTTACAAAGAGCTTCGAAAAGACGAAAGAAATGGTGGAGGATTCCGCTAAAGCTGCCGCCCAAACGCTTCAAAAACCACCACCCCATTCCGAACTCTAG

Coding sequence (CDS)

ATGGAAATGGAGAAGAAGAAGGTGAAATTAGTATTAAGGATGCTGCTGTTACTGCTGCTTGTTCTTGTTGGTATTGTGAAGGCTAATGAAGAAGCAGCAAATAACATATATTCAGAAACATCAACACCAAATCCTCCAAACTCCTATTGGGAAGAAGTTCGAAAGGTGGTGAATAAAGCCTACACCTATCTGTTTCCTCCAAAAATAGATTTCCGACCAGGAAAGGCTGTAGAAGATGATTCTGGAGTGAGTGTGAAGAATGGGAATGTTAATGTGAAGGAAGCTGTTACAAAGAGCTTCGAAAAGACGAAAGAAATGGTGGAGGATTCCGCTAAAGCTGCCGCCCAAACGCTTCAAAAACCACCACCCCATTCCGAACTCTAG

Protein sequence

MEMEKKKVKLVLRMLLLLLLVLVGIVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL
Homology
[Close]
BLAST of CsaV3_3G030620 vs. NCBI nr
Match: XP_004144421.1 (PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus] >KGN58430.1 hypothetical protein Csa_3G642710 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 4.3e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 25  IVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVS 84
           IVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVS
Sbjct: 25  IVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVS 84

Query: 85  VKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL 128
           VKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL
Sbjct: 85  VKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL 127

[Close]
BLAST of CsaV3_3G030620 vs. NCBI nr
Match: XP_008460283.1 (PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43
Identity = 92/100 (92.00%), Postives = 98/100 (98.00%), Query Frame = 0 

Query: 28  ANEEAANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKN 87
           AN+EAANN+YSETSTPNPPNSYWEEVRKVVNKAY+YLFPPKIDFRPGKAVEDDSG+SV++
Sbjct: 29  ANDEAANNVYSETSTPNPPNSYWEEVRKVVNKAYSYLFPPKIDFRPGKAVEDDSGLSVED 88

Query: 88  GNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL 128
           G  NVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL
Sbjct: 89  G--NVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL 126

[Close]
BLAST of CsaV3_3G030620 vs. NCBI nr
Match: XP_022948557.1 (uncharacterized protein LOC111452199 [Cucurbita moschata])

HSP 1 Score: 96.7 bits (239), Expect = 6.2e-17
Identity = 61/109 (55.96%), Postives = 68/109 (62.39%), Query Frame = 0 

Query: 27  KANEEAANNIYSETS--------TPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVE 86
           KA+EEA NNI                        VRKVVN+A T LFPPKIDFRPGK VE
Sbjct: 9   KADEEAPNNIEETVGRVISAXXXXXXXXXXXXXXVRKVVNRAVTCLFPPKIDFRPGKPVE 68

Query: 87  DDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL 128
           D       NGN N+KE++TKSF  TK+MVEDSAKAAAQTL +P P SEL
Sbjct: 69  DGQ----VNGNENMKESITKSFHTTKQMVEDSAKAAAQTL-RPQPDSEL 112

[Close]
BLAST of CsaV3_3G030620 vs. NCBI nr
Match: XP_022148210.1 (uncharacterized protein LOC111016933 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 3.0e-11
Identity = 44/86 (51.16%), Postives = 61/86 (70.93%), Query Frame = 0 

Query: 33  ANNIYSETSTPNP--PNSYWEEVRK-VVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGN 92
           A ++++ TS   P     YW+ +R  V++    YLFPPKIDFRPGKA +D+ G    +GN
Sbjct: 65  AISVFTVTSAAPPCATPHYWDRLRTWVLDPLLAYLFPPKIDFRPGKADDDEDGGG--HGN 124

Query: 93  VNVKEAVTKSFEKTKEMVEDSAKAAA 116
            NVKEA+TKSF++ K++V+DSAKAAA
Sbjct: 125 ENVKEALTKSFDQGKQIVQDSAKAAA 148

[Close]
BLAST of CsaV3_3G030620 vs. NCBI nr
Match: XP_004507555.1 (PREDICTED: uncharacterized protein LOC101512441 isoform X2 [Cicer arietinum])

HSP 1 Score: 64.7 bits (156), Expect = 2.6e-07
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 0 

Query: 32  AANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPG---KAVEDDSGVSVKNG 91
           +A +IYS    P   + YW  V+ +VN  Y Y FPP IDFR G   + V D++G   K  
Sbjct: 50  SAYSIYSSIFLPTSVSQYWNMVKGLVNHTYAYFFPPNIDFRRGDGAEVVADENGACEK-- 109

Query: 92  NVNVKEAVTKSFEKTKEMVEDSAKAAA 116
              VKEA+ KS   +K  +ED+AK+AA
Sbjct: 110 ---VKEAIVKSIGTSKATLEDAAKSAA 131

[Close]
BLAST of CsaV3_3G030620 vs. TAIR10
Match: AT1G16850.1 (unknown protein)

HSP 1 Score: 44.3 bits (103), Expect = 6.6e-05
Identity = 25/71 (35.21%), Postives = 45/71 (63.38%), Query Frame = 0 

Query: 48  SYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMV 107
           +YW +VR+ +++  ++ FPP   F  GK   +D+ +       N+KEA T+SFE +K  V
Sbjct: 60  NYWAKVRETLDRGQSHFFPPNTYF-TGK---NDAPM---GAGENMKEAATRSFEHSKATV 119

Query: 108 EDSAKAAAQTL 119
           E++A++AA+ +
Sbjct: 120 EEAARSAAEVV 123

[Close]
BLAST of CsaV3_3G030620 vs. TrEMBL
Match: tr|A0A0A0L904|A0A0A0L904_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.8e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 25  IVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVS 84
           IVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVS
Sbjct: 25  IVKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVS 84

Query: 85  VKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL 128
           VKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL
Sbjct: 85  VKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL 127

[Close]
BLAST of CsaV3_3G030620 vs. TrEMBL
Match: tr|A0A1S3CDE0|A0A1S3CDE0_CUCME (uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 8.8e-44
Identity = 92/100 (92.00%), Postives = 98/100 (98.00%), Query Frame = 0 

Query: 28  ANEEAANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKN 87
           AN+EAANN+YSETSTPNPPNSYWEEVRKVVNKAY+YLFPPKIDFRPGKAVEDDSG+SV++
Sbjct: 29  ANDEAANNVYSETSTPNPPNSYWEEVRKVVNKAYSYLFPPKIDFRPGKAVEDDSGLSVED 88

Query: 88  GNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL 128
           G  NVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL
Sbjct: 89  G--NVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL 126

[Close]
BLAST of CsaV3_3G030620 vs. TrEMBL
Match: tr|A0A1S2YNM5|A0A1S2YNM5_CICAR (uncharacterized protein LOC101512441 isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101512441 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-07
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 0 

Query: 32  AANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPG---KAVEDDSGVSVKNG 91
           +A +IYS    P   + YW  V+ +VN  Y Y FPP IDFR G   + V D++G   K  
Sbjct: 50  SAYSIYSSIFLPTSVSQYWNMVKGLVNHTYAYFFPPNIDFRRGDGAEVVADENGACEK-- 109

Query: 92  NVNVKEAVTKSFEKTKEMVEDSAKAAA 116
              VKEA+ KS   +K  +ED+AK+AA
Sbjct: 110 ---VKEAIVKSIGTSKATLEDAAKSAA 131

[Close]
BLAST of CsaV3_3G030620 vs. TrEMBL
Match: tr|A0A072UFS3|A0A072UFS3_MEDTR (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=25491178 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.0e-07
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 0 

Query: 32  AANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFR---PGKAVEDDSGVSVKNG 91
           +A ++YS    P     YW  V+ +VN  YTY FPP IDFR    G+AV D++G   K  
Sbjct: 55  SAYSMYSSV-FPTSIGQYWHMVKAIVNHTYTYFFPPNIDFRRGEEGEAVVDNNGAGDK-- 114

Query: 92  NVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQK 121
              VKEA+ KS   +K  +ED+AK+AA  +++
Sbjct: 115 ---VKEALAKSLGTSKATLEDAAKSAADKVKR 140

[Close]
BLAST of CsaV3_3G030620 vs. TrEMBL
Match: tr|A0A2K3M8Y0|A0A2K3M8Y0_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g043339 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-06
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 0 

Query: 32  AANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNG-NV 91
           +A ++Y  +  P     YW  V+ +VN  Y Y FPP IDFR G   E +  V+  NG   
Sbjct: 55  SAYSMYYSSIFPTTIGQYWHMVKTIVNHTYAYFFPPNIDFRRGD--EAELAVASNNGAGE 114

Query: 92  NVKEAVTKSFEKTKEMVEDSAKAAAQTLQK 121
            VKEA +KS   +K  +ED+AK+AA+ +++
Sbjct: 115 KVKEAFSKSLGTSKATLEDAAKSAAEKVKR 142

The following BLAST results are available for this feature:
BLAST of CsaV3_3G030620 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144421.14.3e-50100.00PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus] >KGN58430.1 hy... [more]
XP_008460283.11.3e-4392.00PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo][more]
XP_022948557.16.2e-1755.96uncharacterized protein LOC111452199 [Cucurbita moschata][more]
XP_022148210.13.0e-1151.16uncharacterized protein LOC111016933 [Momordica charantia][more]
XP_004507555.12.6e-0742.53PREDICTED: uncharacterized protein LOC101512441 isoform X2 [Cicer arietinum][more]
BLAST of CsaV3_3G030620 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G16850.16.6e-0535.21unknown protein[more]
BLAST of CsaV3_3G030620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G030620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L904|A0A0A0L904_CUCSA2.8e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1[more]
tr|A0A1S3CDE0|A0A1S3CDE0_CUCME8.8e-4492.00uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=... [more]
tr|A0A1S2YNM5|A0A1S2YNM5_CICAR1.7e-0742.53uncharacterized protein LOC101512441 isoform X2 OS=Cicer arietinum OX=3827 GN=LO... [more]
tr|A0A072UFS3|A0A072UFS3_MEDTR5.0e-0741.30Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=25491178 PE=4 ... [more]
tr|A0A2K3M8Y0|A0A2K3M8Y0_TRIPR1.5e-0638.89Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g04333... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G030620.1CsaV3_3G030620.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..127
NoneNo IPR availablePANTHERPTHR35463:SF1SUBFAMILY NOT NAMEDcoord: 46..119
NoneNo IPR availablePANTHERPTHR35463FAMILY NOT NAMEDcoord: 46..119

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G030620CSPI03G28220Wild cucumber (PI 183967)cpicucB144
CsaV3_3G030620CmaCh01G000040Cucurbita maxima (Rimu)cmacucB0539
CsaV3_3G030620Cp4.1LG02g17480Cucurbita pepo (Zucchini)cpecucB0697
CsaV3_3G030620CsGy3G026210Cucumber (Gy14) v2cgybcucB117
CsaV3_3G030620Cla012522Watermelon (97103) v1cucwmB225
CsaV3_3G030620MELO3C022653Melon (DHL92) v3.5.1cucmeB208
CsaV3_3G030620Lsi07G006740Bottle gourd (USVL1VR-Ls)cuclsiB253
CsaV3_3G030620MELO3C022653.2Melon (DHL92) v3.6.1cucmedB201
CsaV3_3G030620Cla97C07G141500Watermelon (97103) v2cucwmbB241
CsaV3_3G030620Bhi01G002251Wax gourdcucwgoB280
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G030620Silver-seed gourdcarcucB0228
CsaV3_3G030620Cucumber (Gy14) v1cgycucB227
CsaV3_3G030620Cucurbita maxima (Rimu)cmacucB0282
CsaV3_3G030620Cucurbita moschata (Rifu)cmocucB0273
CsaV3_3G030620Cucurbita moschata (Rifu)cmocucB0525
CsaV3_3G030620Cucurbita pepo (Zucchini)cpecucB0750
CsaV3_3G030620Watermelon (Charleston Gray)cucwcgB261