Lsi07G006740 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G006740
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr07 : 7212915 .. 7215231 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTATGGTTAGTCACAGAACTCAAAAGTGCGGTTACCTGCTGTGTGCACAGTGAATTGATCTGTTAGAGTTATAGAGTTTTTAATTTGATCCAAAGCATATATGGAATTCAAAGTCTTCCTGTTTTTCTCCCGGGAACGGGTTGACTGGTTTCTTCCAGAAAGACATGTATAGACATGGGATATGGCGTGATTGAATATAGTAAGTGATATTGTTTAATTTTATGATTTCTTTGAATGGACTAGTCTTTGTATGGCTGTGCAGATAGAATTATGGCATCAGTTTTAGATGGTGAGAGGGTCAAAGACTCAAAACTAAAAGTACAGTCGCAAATCTTCTTTGTATGGATGCCAGTACAACTATTATTCCATCTTTGAACGCATCTGGCATTTGATTATTATTATTATTGTGTTACAGGTGGATTCTGGCTGTACACATATTGGCATGGAGAAATATAGGGATTTCTTAATAAGCTGTTGATGAGTTGGTTGAAAATGTTGTGTGAATTTTATATATTTATATGTATGCTCTTCAGCTTCTTGAAACGAAGTTGCATTTGAGATTTTGATAAACTGTCTTCTATTAGAATTATCTTTACTTACTGGACAAGTGGAAGAGATGTGAAATAGACAGAATCCTAAATGAAACCTACTGTCTCTAGTTTGCTTACACGTGAATCTTTACCTTCAGGTGTGGATGGATGGGGGAAATTACCCAAAATAATAATGTAGTTGGAGAACGGGCTATCTTGAAGTTGAGCTTGATTGATATGGAAATTGAAAGTCCCCTTTTTTTTTCCCATTTCTTCACGGCTTGGATTAGACGCATATTTTCATTGTGCAAGGGAACTGCTTGAAAGTTGAATGAGCGAATTTGGGATTTTGCTTGTACTGGTCTGTTTGGTGTATCAGACGCAAGTAAGATGTGACACACCACCACACACTTTCTAATTCGGATTCCTGATTCCTAACATTGGCTTGAATTCGACTTACTTCCCACTTTGTCTATCAATTAGAATGGAATTTTATCAAGGGAGTTAGTGATTGGGATACGAAGTTGAGTTGTGAATCTATGATATAAAGAGTAATTAGGTATAAAATTTGATTTTTTTTTTTTATTTGTGGGCCTATAAGCTCATTTGATCAAATAAGGAGTGGAGTCACAACTTCGACTCTTTGGACCGAACACCTCCTAAATAGTTATCTAGAGTTTGATTTGGTGCAATAATTTTCAACCGTAGTTGAGTATTGGGATTAGTGATTGTCATCGATGACCACCTACTATTGGTAACAATTGCCAATTACTAGTTGTCTGATCCTCACGCTTGATCCATTGAGTTGGTTGTCATTGGTCAGTGATTACCACACCACTCTCTAATACTCGATTCCAATTGCCAATCACTAGTTTTGGTTGTAGCGTTGACAACCAACTTTTTCAACCACTAAAAAGTTGAAGTGTTAACTCATAATGTTTAACACTTGTTACTTATAGTAATTTAACACTTGTAGAAGCATTTTTAGCATACGTACAAATTTGTATATAAAAATATTTTTGAAAAAAAAGAGAAACGAATAAAACAAACGATGATGGTGAAGAAGACAAAAGCATTGGAATGTAAGAAAAGGGAAAGAAAGGGGAGATGAGTTGTTGACTTGGGTTGGCTCCAAAACCCAAAGCATATGGAAACGTGTAGGGAAAATGGTAGATATCGTGTCCACCTTGCAATCCTCAAGGGAACTTCCCAGAGGCTAAAAACCCCCCATCTTCCACTTCTTATTTACCCAAATAACATAATTAGCTACAACTAGCAGTCAACAATGGAGAAGAAGGAGAAGATTGGTGTTTTTGTTTTGGTTTTGTGGATGCTGATTATTATTGTTGGTGTTGGAAAGGCTCATGAGGAAGCACCAAATAACATATTTTCAGAAACAGTGAAATCAGCAGAAGCAGTTAGCCCTAATCCTAATTCTTACTGGGAAGAAGTTCGAAAGCTGGTCAATAAAGCTTACACGTATCTATTCCCTCCCAAAATAGAGTCAGTTATCTCCATTAATTTGGTTTCTAATTTGTTTAATTTGTTAGTTTAGTTTACTAATTAAGGGGTTTGGGTTTGGGTTTTAGTTTCCGACCAGGAAAGCCGGTGGAAGATGGCGGAGTGAGTGTGAATGGGAATGGGAATGGGAATGGGAATGTGAAGGAAGCTGTTACCAAGAGCTTCCAAAAGACGAAGGAAATGGTGGAGGATTCTGCCAAAGCTGCCGGTGAAACGCTTCAACAACAACAACAACAACCACCGCCACATTCAGAACTCTAG

mRNA sequence

ATGGGGGGTTTGGGTTTGGGTTTTAGTTTCCGACCAGGAAAGCCGGTGGAAGATGGCGGAGTGAGTGTGAATGGGAATGGGAATGGGAATGGGAATGTGAAGGAAGCTGTTACCAAGAGCTTCCAAAAGACGAAGGAAATGGTGGAGGATTCTGCCAAAGCTGCCGGTGAAACGCTTCAACAACAACAACAACAACCACCGCCACATTCAGAACTCTAG

Coding sequence (CDS)

ATGGGGGGTTTGGGTTTGGGTTTTAGTTTCCGACCAGGAAAGCCGGTGGAAGATGGCGGAGTGAGTGTGAATGGGAATGGGAATGGGAATGGGAATGTGAAGGAAGCTGTTACCAAGAGCTTCCAAAAGACGAAGGAAATGGTGGAGGATTCTGCCAAAGCTGCCGGTGAAACGCTTCAACAACAACAACAACAACCACCGCCACATTCAGAACTCTAG

Protein sequence

MGGLGLGFSFRPGKPVEDGGVSVNGNGNGNGNVKEAVTKSFQKTKEMVEDSAKAAGETLQQQQQQPPPHSEL
Homology
[Close]
BLAST of Lsi07G006740 vs. TrEMBL
Match: A0A0A0L904_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642710 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.0e-12
Identity = 48/64 (75.00%), Postives = 51/64 (79.69%), Query Frame = 1 

Query: 10  FRPGKPVED-GGVSVNGNGNGNGNVKEAVTKSFQKTKEMVEDSAKAAGETLQQQQQQPPP 69
           FRPGK VED  GVSV    NGN NVKEAVTKSF+KTKEMVEDSAKAA +TL    Q+PPP
Sbjct: 71  FRPGKAVEDDSGVSVK---NGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTL----QKPPP 127

Query: 70  HSEL 73
           HSEL
Sbjct: 131 HSEL 127

[Close]
BLAST of Lsi07G006740 vs. NCBI nr
Match: gi|449453350|ref|XP_004144421.1| (PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-12
Identity = 48/64 (75.00%), Postives = 51/64 (79.69%), Query Frame = 1 

Query: 10  FRPGKPVED-GGVSVNGNGNGNGNVKEAVTKSFQKTKEMVEDSAKAAGETLQQQQQQPPP 69
           FRPGK VED  GVSV    NGN NVKEAVTKSF+KTKEMVEDSAKAA +TL    Q+PPP
Sbjct: 71  FRPGKAVEDDSGVSVK---NGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTL----QKPPP 127

Query: 70  HSEL 73
           HSEL
Sbjct: 131 HSEL 127

[Close]
BLAST of Lsi07G006740 vs. NCBI nr
Match: gi|659120627|ref|XP_008460283.1| (PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-10
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1 

Query: 10  FRPGKPVED-GGVSVNGNGNGNGNVKEAVTKSFQKTKEMVEDSAKAAGETLQQQQQQPPP 69
           FRPGK VED  G+SV      +GNVKEAVTKSF+KTKEMVEDSAKAA +TL    Q+PPP
Sbjct: 72  FRPGKAVEDDSGLSVE-----DGNVKEAVTKSFEKTKEMVEDSAKAAAQTL----QKPPP 126

Query: 70  HSEL 73
           HSEL
Sbjct: 132 HSEL 126

The following BLAST results are available for this feature:
BLAST of Lsi07G006740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi07G006740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L904_CUCSA6.0e-1275.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642710 PE=4 SV=1[more]
BLAST of Lsi07G006740 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi07G006740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453350|ref|XP_004144421.1|8.6e-1275.00PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus][more]
gi|659120627|ref|XP_008460283.1|1.6e-1070.31PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G006740.1Lsi07G006740.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi07G006740Cla012522Watermelon (97103) v1lsiwmB438
Lsi07G006740MELO3C022653Melon (DHL92) v3.5.1lsimeB438
Lsi07G006740Bhi01G002251Wax gourdlsiwgoB560
Lsi07G006740CsaV3_3G030620Cucumber (Chinese Long) v3cuclsiB253
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G006740Watermelon (97103) v2lsiwmbB405
Lsi07G006740Wax gourdlsiwgoB544
Lsi07G006740Cucumber (Gy14) v1cgylsiB242
Lsi07G006740Cucurbita maxima (Rimu)cmalsiB256
Lsi07G006740Cucurbita maxima (Rimu)cmalsiB450
Lsi07G006740Cucurbita moschata (Rifu)cmolsiB244
Lsi07G006740Cucurbita moschata (Rifu)cmolsiB437
Lsi07G006740Cucurbita pepo (Zucchini)cpelsiB472
Lsi07G006740Cucurbita pepo (Zucchini)cpelsiB516
Lsi07G006740Wild cucumber (PI 183967)cpilsiB232
Lsi07G006740Cucumber (Chinese Long) v2culsiB233
Lsi07G006740Watermelon (Charleston Gray)lsiwcgB406
Lsi07G006740Cucumber (Gy14) v2cgyblsiB220
Lsi07G006740Silver-seed gourdcarlsiB182