Lsi07G006740 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G006740
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr07 : 7212915 .. 7215231 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTATGGTTAGTCACAGAACTCAAAAGTGCGGTTACCTGCTGTGTGCACAGTGAATTGATCTGTTAGAGTTATAGAGTTTTTAATTTGATCCAAAGCATATATGGAATTCAAAGTCTTCCTGTTTTTCTCCCGGGAACGGGTTGACTGGTTTCTTCCAGAAAGACATGTATAGACATGGGATATGGCGTGATTGAATATAGTAAGTGATATTGTTTAATTTTATGATTTCTTTGAATGGACTAGTCTTTGTATGGCTGTGCAGATAGAATTATGGCATCAGTTTTAGATGGTGAGAGGGTCAAAGACTCAAAACTAAAAGTACAGTCGCAAATCTTCTTTGTATGGATGCCAGTACAACTATTATTCCATCTTTGAACGCATCTGGCATTTGATTATTATTATTATTGTGTTACAGGTGGATTCTGGCTGTACACATATTGGCATGGAGAAATATAGGGATTTCTTAATAAGCTGTTGATGAGTTGGTTGAAAATGTTGTGTGAATTTTATATATTTATATGTATGCTCTTCAGCTTCTTGAAACGAAGTTGCATTTGAGATTTTGATAAACTGTCTTCTATTAGAATTATCTTTACTTACTGGACAAGTGGAAGAGATGTGAAATAGACAGAATCCTAAATGAAACCTACTGTCTCTAGTTTGCTTACACGTGAATCTTTACCTTCAGGTGTGGATGGATGGGGGAAATTACCCAAAATAATAATGTAGTTGGAGAACGGGCTATCTTGAAGTTGAGCTTGATTGATATGGAAATTGAAAGTCCCCTTTTTTTTTCCCATTTCTTCACGGCTTGGATTAGACGCATATTTTCATTGTGCAAGGGAACTGCTTGAAAGTTGAATGAGCGAATTTGGGATTTTGCTTGTACTGGTCTGTTTGGTGTATCAGACGCAAGTAAGATGTGACACACCACCACACACTTTCTAATTCGGATTCCTGATTCCTAACATTGGCTTGAATTCGACTTACTTCCCACTTTGTCTATCAATTAGAATGGAATTTTATCAAGGGAGTTAGTGATTGGGATACGAAGTTGAGTTGTGAATCTATGATATAAAGAGTAATTAGGTATAAAATTTGATTTTTTTTTTTTATTTGTGGGCCTATAAGCTCATTTGATCAAATAAGGAGTGGAGTCACAACTTCGACTCTTTGGACCGAACACCTCCTAAATAGTTATCTAGAGTTTGATTTGGTGCAATAATTTTCAACCGTAGTTGAGTATTGGGATTAGTGATTGTCATCGATGACCACCTACTATTGGTAACAATTGCCAATTACTAGTTGTCTGATCCTCACGCTTGATCCATTGAGTTGGTTGTCATTGGTCAGTGATTACCACACCACTCTCTAATACTCGATTCCAATTGCCAATCACTAGTTTTGGTTGTAGCGTTGACAACCAACTTTTTCAACCACTAAAAAGTTGAAGTGTTAACTCATAATGTTTAACACTTGTTACTTATAGTAATTTAACACTTGTAGAAGCATTTTTAGCATACGTACAAATTTGTATATAAAAATATTTTTGAAAAAAAAGAGAAACGAATAAAACAAACGATGATGGTGAAGAAGACAAAAGCATTGGAATGTAAGAAAAGGGAAAGAAAGGGGAGATGAGTTGTTGACTTGGGTTGGCTCCAAAACCCAAAGCATATGGAAACGTGTAGGGAAAATGGTAGATATCGTGTCCACCTTGCAATCCTCAAGGGAACTTCCCAGAGGCTAAAAACCCCCCATCTTCCACTTCTTATTTACCCAAATAACATAATTAGCTACAACTAGCAGTCAACAATGGAGAAGAAGGAGAAGATTGGTGTTTTTGTTTTGGTTTTGTGGATGCTGATTATTATTGTTGGTGTTGGAAAGGCTCATGAGGAAGCACCAAATAACATATTTTCAGAAACAGTGAAATCAGCAGAAGCAGTTAGCCCTAATCCTAATTCTTACTGGGAAGAAGTTCGAAAGCTGGTCAATAAAGCTTACACGTATCTATTCCCTCCCAAAATAGAGTCAGTTATCTCCATTAATTTGGTTTCTAATTTGTTTAATTTGTTAGTTTAGTTTACTAATTAAGGGGTTTGGGTTTGGGTTTTAGTTTCCGACCAGGAAAGCCGGTGGAAGATGGCGGAGTGAGTGTGAATGGGAATGGGAATGGGAATGGGAATGTGAAGGAAGCTGTTACCAAGAGCTTCCAAAAGACGAAGGAAATGGTGGAGGATTCTGCCAAAGCTGCCGGTGAAACGCTTCAACAACAACAACAACAACCACCGCCACATTCAGAACTCTAG

mRNA sequence

ATGGGGGGTTTGGGTTTGGGTTTTAGTTTCCGACCAGGAAAGCCGGTGGAAGATGGCGGAGTGAGTGTGAATGGGAATGGGAATGGGAATGGGAATGTGAAGGAAGCTGTTACCAAGAGCTTCCAAAAGACGAAGGAAATGGTGGAGGATTCTGCCAAAGCTGCCGGTGAAACGCTTCAACAACAACAACAACAACCACCGCCACATTCAGAACTCTAG

Coding sequence (CDS)

ATGGGGGGTTTGGGTTTGGGTTTTAGTTTCCGACCAGGAAAGCCGGTGGAAGATGGCGGAGTGAGTGTGAATGGGAATGGGAATGGGAATGGGAATGTGAAGGAAGCTGTTACCAAGAGCTTCCAAAAGACGAAGGAAATGGTGGAGGATTCTGCCAAAGCTGCCGGTGAAACGCTTCAACAACAACAACAACAACCACCGCCACATTCAGAACTCTAG

Protein sequence

MGGLGLGFSFRPGKPVEDGGVSVNGNGNGNGNVKEAVTKSFQKTKEMVEDSAKAAGETLQQQQQQPPPHSEL
Homology
[Close]
BLAST of Lsi07G006740 vs. TrEMBL
Match: A0A0A0L904_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642710 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.0e-12
Identity = 48/64 (75.00%), Postives = 51/64 (79.69%), Query Frame = 1 

Query: 10  FRPGKPVED-GGVSVNGNGNGNGNVKEAVTKSFQKTKEMVEDSAKAAGETLQQQQQQPPP 69
           FRPGK VED  GVSV    NGN NVKEAVTKSF+KTKEMVEDSAKAA +TL    Q+PPP
Sbjct: 71  FRPGKAVEDDSGVSVK---NGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTL----QKPPP 127

Query: 70  HSEL 73
           HSEL
Sbjct: 131 HSEL 127

[Close]
BLAST of Lsi07G006740 vs. NCBI nr
Match: gi|449453350|ref|XP_004144421.1| (PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-12
Identity = 48/64 (75.00%), Postives = 51/64 (79.69%), Query Frame = 1 

Query: 10  FRPGKPVED-GGVSVNGNGNGNGNVKEAVTKSFQKTKEMVEDSAKAAGETLQQQQQQPPP 69
           FRPGK VED  GVSV    NGN NVKEAVTKSF+KTKEMVEDSAKAA +TL    Q+PPP
Sbjct: 71  FRPGKAVEDDSGVSVK---NGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTL----QKPPP 127

Query: 70  HSEL 73
           HSEL
Sbjct: 131 HSEL 127

[Close]
BLAST of Lsi07G006740 vs. NCBI nr
Match: gi|659120627|ref|XP_008460283.1| (PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-10
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1 

Query: 10  FRPGKPVED-GGVSVNGNGNGNGNVKEAVTKSFQKTKEMVEDSAKAAGETLQQQQQQPPP 69
           FRPGK VED  G+SV      +GNVKEAVTKSF+KTKEMVEDSAKAA +TL    Q+PPP
Sbjct: 72  FRPGKAVEDDSGLSVE-----DGNVKEAVTKSFEKTKEMVEDSAKAAAQTL----QKPPP 126

Query: 70  HSEL 73
           HSEL
Sbjct: 132 HSEL 126

The following BLAST results are available for this feature:
BLAST of Lsi07G006740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi07G006740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L904_CUCSA6.0e-1275.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642710 PE=4 SV=1[more]
BLAST of Lsi07G006740 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi07G006740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453350|ref|XP_004144421.1|8.6e-1275.00PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus][more]
gi|659120627|ref|XP_008460283.1|1.6e-1070.31PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G006740.1Lsi07G006740.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi07G006740Cla012522Watermelon (97103) v1lsiwmB438
Lsi07G006740MELO3C022653Melon (DHL92) v3.5.1lsimeB438
Lsi07G006740Bhi01G002251Wax gourdlsiwgoB560
Lsi07G006740CsaV3_3G030620Cucumber (Chinese Long) v3cuclsiB253
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G006740Wild cucumber (PI 183967)cpilsiB232
Lsi07G006740Cucumber (Chinese Long) v2culsiB233
Lsi07G006740Watermelon (Charleston Gray)lsiwcgB406
Lsi07G006740Cucumber (Gy14) v2cgyblsiB220
Lsi07G006740Silver-seed gourdcarlsiB182
Lsi07G006740Watermelon (97103) v2lsiwmbB405
Lsi07G006740Wax gourdlsiwgoB544
Lsi07G006740Cucumber (Gy14) v1cgylsiB242
Lsi07G006740Cucurbita maxima (Rimu)cmalsiB256
Lsi07G006740Cucurbita maxima (Rimu)cmalsiB450
Lsi07G006740Cucurbita moschata (Rifu)cmolsiB244
Lsi07G006740Cucurbita moschata (Rifu)cmolsiB437
Lsi07G006740Cucurbita pepo (Zucchini)cpelsiB472
Lsi07G006740Cucurbita pepo (Zucchini)cpelsiB516