Cla97C07G141500 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C07G141500
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Transmembrane protein, putative
Location	Cla97Chr07 : 29091963 .. 29092426 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAAGGAGATGAAGATGAGTGCTTTTGTTTTGGTATTATGGATGATGATGCTGATTATTCTTGTTGGTGTTGGGAAGGCTAATGAGGAAGCACCAAATAACATATTTTCAGAGACAGTGAAATCAGCAGAAGCAGCTAGCCCTAATCCCAGCTCTTACTGGGAGGAACTTCGAAAGTTTGTCAATAAAGTTTACACCTATCTCTTCCCTCCCAAAATAGAGTCAGTGATCTCCATTAATTTAGTTTCTAATTTGTTTAATTTGTTAGTTTAGTTTACTAACTAAGGGGTTTGGGTTTTAGTTTCCGACCAGGAAAGCCAGTGGAAGATGGCGGAGTGAATGTGAAGGAAGCCATTACCAAGAGCTTCCAAAAGACGAAGGAAACGGTGGAGGATTCCTCCAAAGCTGCCGCTGAAACGCTTCAACAACAACAACAACAACCACATTCAGAACTGTAG

mRNA sequence

ATGGAGAAGAAGGAGATGAAGATGAGTGCTTTTGTTTTGGTATTATGGATGATGATGCTGATTATTCTTGTTGGTGTTGGGAAGGCTAATGAGGAAGCACCAAATAACATATTTTCAGAGACAGTGAAATCAGCAGAAGCAGCTAGCCCTAATCCCAGCTCTTACTGGGAGGAACTTCGAAAGTTTGTCAATAAAGTTTACACCTATCTCTTCCCTCCCAAAATAGATTTCCGACCAGGAAAGCCAGTGGAAGATGGCGGAGTGAATGTGAAGGAAGCCATTACCAAGAGCTTCCAAAAGACGAAGGAAACGGTGGAGGATTCCTCCAAAGCTGCCGCTGAAACGCTTCAACAACAACAACAACAACCACATTCAGAACTGTAG

Coding sequence (CDS)

ATGGAGAAGAAGGAGATGAAGATGAGTGCTTTTGTTTTGGTATTATGGATGATGATGCTGATTATTCTTGTTGGTGTTGGGAAGGCTAATGAGGAAGCACCAAATAACATATTTTCAGAGACAGTGAAATCAGCAGAAGCAGCTAGCCCTAATCCCAGCTCTTACTGGGAGGAACTTCGAAAGTTTGTCAATAAAGTTTACACCTATCTCTTCCCTCCCAAAATAGATTTCCGACCAGGAAAGCCAGTGGAAGATGGCGGAGTGAATGTGAAGGAAGCCATTACCAAGAGCTTCCAAAAGACGAAGGAAACGGTGGAGGATTCCTCCAAAGCTGCCGCTGAAACGCTTCAACAACAACAACAACAACCACATTCAGAACTGTAG

Protein sequence

MEKKEMKMSAFVLVLWMMMLIILVGVGKANEEAPNNIFSETVKSAEAASPNPSSYWEELRKFVNKVYTYLFPPKIDFRPGKPVEDGGVNVKEAITKSFQKTKETVEDSSKAAAETLQQQQQQPHSEL

Homology

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BLAST of Cla97C07G141500 vs. NCBI nr
Match: XP_004144421.1 (PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus] >KGN58430.1 hypothetical protein Csa_3G642710 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 2.6e-23
Identity = 67/109 (61.47%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 28  KANEEAPNNIFSETVKSAEAASPN-PSSYWEELRKFVNKVYTYLFPPKIDFRPGKPVED- 87
           KANEEA NNI+SET      ++PN P+SYWEE+RK VNK YTYLFPPKIDFRPGK VED 
Sbjct: 27  KANEEAANNIYSET------STPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDD 86

Query: 88  -------GGVNVKEAITKSFQKTKETVEDSXXXXXXXXXXXXXXPHSEL 128
                  G VNVKEA+TKSF+KTKE VEDS              PHSEL
Sbjct: 87  SGVSVKNGNVNVKEAVTKSFEKTKEMVEDS--AKAAAQTLQKPPPHSEL 127

[Close]

BLAST of Cla97C07G141500 vs. NCBI nr
Match: XP_008460283.1 (PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 2.0e-20
Identity = 61/106 (57.55%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 29  ANEEAPNNIFSETVKSAEAASPN-PSSYWEELRKFVNKVYTYLFPPKIDFRPGKPVEDGG 88
           AN+EA NN++SET      ++PN P+SYWEE+RK VNK Y+YLFPPKIDFRPGK VED  
Sbjct: 29  ANDEAANNVYSET------STPNPPNSYWEEVRKVVNKAYSYLFPPKIDFRPGKAVEDDS 88

Query: 89  ------VNVKEAITKSFQKTKETVEDSXXXXXXXXXXXXXXPHSEL 128
                  NVKEA+TKSF+KTKE VEDS              PHSEL
Sbjct: 89  GLSVEDGNVKEAVTKSFEKTKEMVEDS--AKAAAQTLQKPPPHSEL 126

[Close]

BLAST of Cla97C07G141500 vs. NCBI nr
Match: XP_022948557.1 (uncharacterized protein LOC111452199 [Cucurbita moschata])

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-14
Identity = 53/92 (57.61%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 25  GVGKANEEAPNNIFSETVKSAEAA----SPNPSSYWEELRKFVNKVYTYLFPPKIDFRPG 84
           GVGKA+EEAPNNI  ETV    +A              +RK VN+  T LFPPKIDFRPG
Sbjct: 6   GVGKADEEAPNNI-EETVGRVISAXXXXXXXXXXXXXXVRKVVNRAVTCLFPPKIDFRPG 65

Query: 85  KPVEDGGV----NVKEAITKSFQKTKETVEDS 109
           KPVEDG V    N+KE+ITKSF  TK+ VEDS
Sbjct: 66  KPVEDGQVNGNENMKESITKSFHTTKQMVEDS 96

[Close]

BLAST of Cla97C07G141500 vs. NCBI nr
Match: XP_022148210.1 (uncharacterized protein LOC111016933 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 3.1e-08
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 36  NIFSETVKSAEAASPNPSSYWEELRKFV-NKVYTYLFPPKIDFRPGKPVED------GGV 95
           ++F+ T  +   A+P+   YW+ LR +V + +  YLFPPKIDFRPGK  +D      G  
Sbjct: 67  SVFTVTSAAPPCATPH---YWDRLRTWVLDPLLAYLFPPKIDFRPGKADDDEDGGGHGNE 126

Query: 96  NVKEAITKSFQKTKETVEDS 109
           NVKEA+TKSF + K+ V+DS
Sbjct: 127 NVKEALTKSFDQGKQIVQDS 143

[Close]

BLAST of Cla97C07G141500 vs. NCBI nr
Match: OIW16969.1 (hypothetical protein TanjilG_32836 [Lupinus angustifolius])

HSP 1 Score: 56.6 bits (135), Expect = 7.1e-05
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 51  NPSSYWEELRKFVNKVYTYLFPPKIDFRPGKPV----EDGGVNVKEAITKSFQKTKETVE 108
           N  +YW  ++ F++  Y   FPP IDFR G  V    EDGG  VKEAI+KS  K+K T+E
Sbjct: 61  NIGNYWHMVKAFLSHAYALFFPPNIDFRRGDEVETVAEDGG--VKEAISKSIGKSKATLE 119

[Close]

BLAST of Cla97C07G141500 vs. TrEMBL
Match: tr|A0A0A0L904|A0A0A0L904_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 67/109 (61.47%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 28  KANEEAPNNIFSETVKSAEAASPN-PSSYWEELRKFVNKVYTYLFPPKIDFRPGKPVED- 87
           KANEEA NNI+SET      ++PN P+SYWEE+RK VNK YTYLFPPKIDFRPGK VED 
Sbjct: 27  KANEEAANNIYSET------STPNPPNSYWEEVRKVVNKAYTYLFPPKIDFRPGKAVEDD 86

Query: 88  -------GGVNVKEAITKSFQKTKETVEDSXXXXXXXXXXXXXXPHSEL 128
                  G VNVKEA+TKSF+KTKE VEDS              PHSEL
Sbjct: 87  SGVSVKNGNVNVKEAVTKSFEKTKEMVEDS--AKAAAQTLQKPPPHSEL 127

[Close]

BLAST of Cla97C07G141500 vs. TrEMBL
Match: tr|A0A1S3CDE0|A0A1S3CDE0_CUCME (uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-20
Identity = 61/106 (57.55%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 29  ANEEAPNNIFSETVKSAEAASPN-PSSYWEELRKFVNKVYTYLFPPKIDFRPGKPVEDGG 88
           AN+EA NN++SET      ++PN P+SYWEE+RK VNK Y+YLFPPKIDFRPGK VED  
Sbjct: 29  ANDEAANNVYSET------STPNPPNSYWEEVRKVVNKAYSYLFPPKIDFRPGKAVEDDS 88

Query: 89  ------VNVKEAITKSFQKTKETVEDSXXXXXXXXXXXXXXPHSEL 128
                  NVKEA+TKSF+KTKE VEDS              PHSEL
Sbjct: 89  GLSVEDGNVKEAVTKSFEKTKEMVEDS--AKAAAQTLQKPPPHSEL 126

[Close]

BLAST of Cla97C07G141500 vs. TrEMBL
Match: tr|B9RHV6|B9RHV6_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1573900 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-04
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 56  WEELRKFVNKVYTYLFPPKIDFR---PGKPVEDG--GVNVKEAITKSFQKTKETVEDS 109
           W+  R  VN V  YL+PP +DFR    G+  E+G  G  VKEA+ +S +K+K TVEDS
Sbjct: 58  WDRARSIVNTVQAYLYPPNLDFRRSNEGREKEEGEAGEKVKEAVGESLRKSKATVEDS 115

[Close]

BLAST of Cla97C07G141500 vs. TrEMBL
Match: tr|A0A072UFS3|A0A072UFS3_MEDTR (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=25491178 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-04
Identity = 27/60 (45.00%), Postives = 34/60 (56.67%), Query Frame = 0


Query: 55  YWEELRKFVNKVYTYLFPPKIDFRPGKPVE------DGGVNVKEAITKSFQKTKETVEDS 109
           YW  ++  VN  YTY FPP IDFR G+  E        G  VKEA+ KS   +K T+ED+
Sbjct: 71  YWHMVKAIVNHTYTYFFPPNIDFRRGEEGEAVVDNNGAGDKVKEALAKSLGTSKATLEDA 130

[Close]

BLAST of Cla97C07G141500 vs. TrEMBL
Match: tr|A0A1J3ITJ1|A0A1J3ITJ1_NOCCA (Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=MP_TR5399_c0_g1_i1_g.14972 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.8e-04
Identity = 23/57 (40.35%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 53  SSYWEELRKFVNKVYTYLFPPKIDFR-PGKPVEDGGVNVKEAITKSFQKTKETVEDS 109
           ++YW +LR+ + + +   FPP +DFR  G P    G  +KEA+T+SF+ +K TVE++
Sbjct: 59  NNYWGKLRETLGRGHARFFPPNVDFRGKGDPSMGAGGKMKEAVTRSFEHSKNTVEEA 115

[Close]

BLAST of Cla97C07G141500 vs. TAIR10
Match: AT1G16850.1 (unknown protein)

HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04
Identity = 20/56 (35.71%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 54  SYWEELRKFVNKVYTYLFPPKIDFRPGKPVEDG-GVNVKEAITKSFQKTKETVEDS 109
           +YW ++R+ +++  ++ FPP   F        G G N+KEA T+SF+ +K TVE++
Sbjct: 60  NYWAKVRETLDRGQSHFFPPNTYFTGKNDAPMGAGENMKEAATRSFEHSKATVEEA 115

The following BLAST results are available for this feature:

BLAST of Cla97C07G141500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144421.1	2.6e-23	61.47	PREDICTED: uncharacterized protein LOC101222094 [Cucumis sativus] >KGN58430.1 hy...	[more]
XP_008460283.1	2.0e-20	57.55	PREDICTED: uncharacterized protein LOC103499155 [Cucumis melo]	[more]
XP_022948557.1	2.9e-14	57.61	uncharacterized protein LOC111452199 [Cucurbita moschata]	[more]
XP_022148210.1	3.1e-08	46.25	uncharacterized protein LOC111016933 [Momordica charantia]	[more]
OIW16969.1	7.1e-05	49.18	hypothetical protein TanjilG_32836 [Lupinus angustifolius]	[more]

BLAST of Cla97C07G141500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L904\|A0A0A0L904_CUCSA	1.7e-23	61.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1	[more]
tr\|A0A1S3CDE0\|A0A1S3CDE0_CUCME	1.4e-20	57.55	uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=...	[more]
tr\|B9RHV6\|B9RHV6_RICCO	1.4e-04	48.28	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1573900 PE=4 SV=1	[more]
tr\|A0A072UFS3\|A0A072UFS3_MEDTR	2.3e-04	45.00	Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=25491178 PE=4 ...	[more]
tr\|A0A1J3ITJ1\|A0A1J3ITJ1_NOCCA	6.8e-04	40.35	Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=MP_TR5399_c0_g1_i1_...	[more]

BLAST of Cla97C07G141500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C07G141500 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16850.1	1.9e-04	35.71	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G141500.1	Cla97C07G141500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 102..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..127
None	No IPR available	PANTHER	PTHR35463	FAMILY NOT NAMED	coord: 8..121

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C07G141500	Cla012522	Watermelon (97103) v1	wmwmbB173
Cla97C07G141500	Csa3G642710	Cucumber (Chinese Long) v2	cuwmbB239
Cla97C07G141500	MELO3C022653	Melon (DHL92) v3.5.1	mewmbB350
Cla97C07G141500	ClCG07G014620	Watermelon (Charleston Gray)	wcgwmbB307
Cla97C07G141500	CSPI03G28220	Wild cucumber (PI 183967)	cpiwmbB248
Cla97C07G141500	CmaCh01G000040	Cucurbita maxima (Rimu)	cmawmbB496
Cla97C07G141500	CsGy3G026210	Cucumber (Gy14) v2	cgybwmbB228
Cla97C07G141500	MELO3C022653.2	Melon (DHL92) v3.6.1	medwmbB338
Cla97C07G141500	CsaV3_3G030620	Cucumber (Chinese Long) v3	cucwmbB241
Cla97C07G141500	Bhi01G002251	Wax gourd	wgowmbB208

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C07G141500	Silver-seed gourd	carwmbB0205
Cla97C07G141500	Cucumber (Gy14) v1	cgywmbB253
Cla97C07G141500	Cucurbita maxima (Rimu)	cmawmbB275
Cla97C07G141500	Cucurbita moschata (Rifu)	cmowmbB255
Cla97C07G141500	Cucurbita moschata (Rifu)	cmowmbB478
Cla97C07G141500	Bottle gourd (USVL1VR-Ls)	lsiwmbB405
Cla97C07G141500	Wax gourd	wgowmbB226