Cucsa.271980 (gene) Cucumber (Gy14) v1

NameCucsa.271980
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnplaced genomic scaffold supercont1.1, whole genome shotgun sequence
Locationscaffold02500 : 724339 .. 726098 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATTTCAATCTCGAGCTTCCATCTTCTTCATTCGATCCTTTCTGCAGTCGGAATTCGGTGATCAGTTGAAAGTGCAGAAGCCAATTATGGGAGGCGGTGGACATGGAGCTGGAACTACTTTCAAGGGCGTGACCATACACCCaCCAAAGCGATGGCACACCGTCACCGGCAAGGGACTGTGCGCCGTTATGTGGTATAAACCCTAGCTTCATTAGTTTCCGATCGACAAATTCTATTGAAGGAAACTAAATTTGATTTTCTCTTTTCAGCCAAATTGCCCCATAGTTAATTTCTTTACTTTCTTTCTCTGTTTTACAAGTCCTGCGTCTAGTCCGATCTGTCCTCATCGCATTATTCCAAATAAACGCATCGCGATCGAGTGGAGTTACAAGTTTTAATATTATCTTGATGCCAGATGCTATATTTGAGTTCATCGTCTCGTATGCAATTTGATGTTGAGTGGAAATTAAAAGAGCTTCAGAATCTGTAGGATTGACTATTGAGAAATTGGCATCTGGGTATTGACCAGATTTTTTATGACTGTCTTTCAGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGTAAAAATCACTGTTCCcTTAGTCGTAAATTACATTTCTACTTATTTTTGGTTAAAATCTCTAGATTTTCTGGCTGAAGTTCTTGAGGATATACATGTTAGAGGGCATcTTTTtGGAGCGATTTTAAAATGGTTAAAATCATTTAGTTGTTTTCAAATTCAGTATGAAAAATTCAATTAGAAGTGTAAAATTgAACATTAAATTGATTTTAGGTGATTAAAGCTTAACTTTgTGTTTCAAAGTTATTTTAAATATGACAAAAAGTGACGTTAACCATTTTCTAAaCACTTGGTTGCCATTTTTAGCTTACATTGTATGTATTTTCTATTACAGAAAATCTTACTTTTGTAATATTTGTTACGATCAGGGCTGGAGACATCCATGGGAAGGTCATGGTCATGGTGATCATGGAAATGAGCACTAGGTACTGTTTTTATGATTTACCTCTCTTTCCAAATTTCCCCAATTAATTATCTGTTTTTATAGAGAGAAAAAGTCAAAACAAAGTGTGTCCTAGCTTTCTGATATAATTACAACACTGAACTATTAGCCACTTGACATCAGGTAATATGAGCGCTATCAGCTATGGGAACTTTTTTTCTTTGGTTGGAGTACATTTCTATTGATAAGCTTTCCAGTTTACTTGTAGGCTTCCTGCTAATGGTGGGCGAAGGGGAAATGGCAAGGCCTCAGTTGCAGGTTCTCTATTTGAATGTTCAGAGTACCATATTTGCTAAGTTCTGTTCAAATAAGGATATTGTGATAGCCAAATGGATATAAACACCACTTCATCATTTTTATTTTGTAATCATGAATTCTTCTGATGTGTTTTGAATATTTAATTTGTGTTCAATCACCGCTGTTGTTGAGTTGAAGCAAAGATCAATTCCCTATTTCTGAATATAGGCTGTACTTTTATTTCACTATGTCTTTTGCATGGCGCATACCTTTCTTTTAAACTAaGGTTGTTCCATTTGGATAATTTGATCTGCTCAAACTGAAATTCATGTACCAATGGTGATGAAGTATTAGTGAATTGCTACCCTTGAATCTAGTGTCACAACAATGGGATTTTATTTGCCATGAGACAGTTACAGGCATTGTATTTGCATAATTCCTCTAGAAACTTAACTGAAGTGATACGAAGAATGCATAGAAAGAG

mRNA sequence

TGATTTCAATCTCGAGCTTCCATCTTCTTCATTCGATCCTTTCTGCAGTCGGAATTCGGTGATCAGTTGAAAGTGCAGAAGCCAATTATGGGAGGCGGTGGACATGGAGCTGGAACTACTTTCAAGGGCGTGACCATACACCCACCAAAGCGATGGCACACCGTCACCGGCAAGGGACTGTGCGCCGTTATGTGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGGCTGGAGACATCCATGGGAAGGTCATGGTCATGGTGATCATGGAAATGAGCACTAGGTACTGTTTTTATGATTTACCTCTCTTTCCAAATTTCCCCAATTAATTATCTGTTTTTATAGAGAGAAAAAGTCAAAACAAAGTGTGTCCTAGCTTTCTGATATAATTACAACACTGAACTATTAGCCACTTGACATCAGTTTACTTGTAGGCTTCCTGCTAATGGTGGGCGAAGGGGAAATGGCAAGGCCTCAGTTGCAGGTTCTCTATTTGAATGTTCAGAGTACCATATTTGCTAAGTTCTGTTCAAATAAGGATATTGTGATAGCCAAATGGATATAAACACCACTTCATCATTTTTATTTTGTAATCATGAATTCTTCTGATGTGTTTTGAATATTTAATTTGTGTTCAATCACCGCTGTTGTTGAGTTGAAGCAAAGATCAATTCCCTATTTCTGAATATAGGCTGTACTTTTATTTCACTATGTCTTTTGCATGGCGCATACCTTTCTTTTAAACTAAGGTTGTTCCATTTGGATAATTTGATCTGCTCAAACTGAAATTCATGTACCAATGGTGATGAAGTATTAGTGAATTGCTACCCTTGAATCTAGTGTCACAACAATGGGATTTTATTTGCCATGAGACAGTTACAGGCATTGTATTTGCATAATTCCTCTAGAAACTTAACTGAAGTGATACGAAGAATGCATAGAAAGAG

Coding sequence (CDS)

ATGGGAGGCGGTGGACATGGAGCTGGAACTACTTTCAAGGGCGTGACCATACACCCaCCAAAGCGATGGCACACCGTCACCGGCAAGGGACTGTGCGCCGTTATGTGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGGCTGGAGACATCCATGGGAAGGTCATGGTCATGGTGATCATGGAAATGAGCACTAG

Protein sequence

MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGHGDHGNEH*
BLAST of Cucsa.271980 vs. Swiss-Prot
Match: NDUB2_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thaliana GN=At1g76200 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 8.6e-33
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1

Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHG G T+KGVT+H PK WHTVTGKGLCAVMWFW+LYRAKQDGPVV+GWRHPW+GH
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVMGWRHPWDGH 60

Query: 61 GHGDHGNEH 70
          G   HG+ H
Sbjct: 61 GDHGHGDHH 69

BLAST of Cucsa.271980 vs. TrEMBL
Match: A0A0A0L0L4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G653460 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-38
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1

Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGDHGNEH 70
          GHGDHGNEH
Sbjct: 61 GHGDHGNEH 69

BLAST of Cucsa.271980 vs. TrEMBL
Match: B9R8J8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1600460 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.5e-31
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 1

Query: 3  GGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG- 62
          GGGHG G T+KGVTIH PKRWH++TGKGLCAVMWFW+LYRAKQDGPVVLGWRHPWEGHG 
Sbjct: 2  GGGHGEGYTYKGVTIHQPKRWHSITGKGLCAVMWFWILYRAKQDGPVVLGWRHPWEGHGD 61

Query: 63 HGDHGNEH 70
          HG HG+EH
Sbjct: 62 HGSHGHEH 69

BLAST of Cucsa.271980 vs. TrEMBL
Match: D7KTA9_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_476772 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 9.6e-31
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1

Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHG G T+KGVT+H PK WHTVTGKGLCAVMWFW+LYRAKQDGPVV+GWRHPW+GH
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVMGWRHPWDGH 60

Query: 61 GHGDHGNEH 70
          G   HG+ H
Sbjct: 61 GDHGHGDHH 69

BLAST of Cucsa.271980 vs. TrEMBL
Match: A0A068UI62_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024542001 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 9.6e-31
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 1

Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          M GGGHG GTTFKG+T+H PKRWH+VTGKG+CA+MWFW+LYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MAGGGHGHGTTFKGITVHHPKRWHSVTGKGMCALMWFWILYRAKQDGPVVLGWRHPWEGH 60

Query: 61 G--HGDHGNEH 70
          G    DHG+EH
Sbjct: 61 GDHSHDHGHEH 71

BLAST of Cucsa.271980 vs. TrEMBL
Match: A0A151RAS0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_039011 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-30
Identity = 60/69 (86.96%), Postives = 61/69 (88.41%), Query Frame = 1

Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGG GHG  TT+KGVTIH PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGHGHGESTTYKGVTIHHPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGDHGNEH 70
           H DHG  H
Sbjct: 61 -HDDHGKGH 68

BLAST of Cucsa.271980 vs. TAIR10
Match: AT1G76200.1 (AT1G76200.1 unknown protein)

HSP 1 Score: 140.2 bits (352), Expect = 4.9e-34
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1

Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHG G T+KGVT+H PK WHTVTGKGLCAVMWFW+LYRAKQDGPVV+GWRHPW+GH
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVMGWRHPWDGH 60

Query: 61 GHGDHGNEH 70
          G   HG+ H
Sbjct: 61 GDHGHGDHH 69

BLAST of Cucsa.271980 vs. NCBI nr
Match: gi|449455585|ref|XP_004145533.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-38
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1

Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGDHGNEH 70
          GHGDHGNEH
Sbjct: 61 GHGDHGNEH 69

BLAST of Cucsa.271980 vs. NCBI nr
Match: gi|659104403|ref|XP_008452937.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 157.9 bits (398), Expect = 6.4e-36
Identity = 64/67 (95.52%), Postives = 67/67 (100.00%), Query Frame = 1

Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTT+KGVTIHPPKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGDHGN 68
          GHGDHG+
Sbjct: 61 GHGDHGD 67

BLAST of Cucsa.271980 vs. NCBI nr
Match: gi|255539152|ref|XP_002510641.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 142.1 bits (357), Expect = 3.6e-31
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 1

Query: 3  GGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG- 62
          GGGHG G T+KGVTIH PKRWH++TGKGLCAVMWFW+LYRAKQDGPVVLGWRHPWEGHG 
Sbjct: 2  GGGHGEGYTYKGVTIHQPKRWHSITGKGLCAVMWFWILYRAKQDGPVVLGWRHPWEGHGD 61

Query: 63 HGDHGNEH 70
          HG HG+EH
Sbjct: 62 HGSHGHEH 69

BLAST of Cucsa.271980 vs. NCBI nr
Match: gi|661888870|emb|CDP07313.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-30
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 1

Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          M GGGHG GTTFKG+T+H PKRWH+VTGKG+CA+MWFW+LYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MAGGGHGHGTTFKGITVHHPKRWHSVTGKGMCALMWFWILYRAKQDGPVVLGWRHPWEGH 60

Query: 61 G--HGDHGNEH 70
          G    DHG+EH
Sbjct: 61 GDHSHDHGHEH 71

BLAST of Cucsa.271980 vs. NCBI nr
Match: gi|18411047|ref|NP_565128.1| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-30
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1

Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHG G T+KGVT+H PK WHTVTGKGLCAVMWFW+LYRAKQDGPVV+GWRHPW+GH
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVMGWRHPWDGH 60

Query: 61 GHGDHGNEH 70
          G   HG+ H
Sbjct: 61 GDHGHGDHH 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NDUB2_ARATH8.6e-3379.71NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thali... [more]
Match NameE-valueIdentityDescription
A0A0A0L0L4_CUCSA1.3e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G653460 PE=4 SV=1[more]
B9R8J8_RICCO2.5e-3185.29Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1600460 PE=4 SV=1[more]
D7KTA9_ARALL9.6e-3179.71Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
A0A068UI62_COFCA9.6e-3180.28Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024542001 PE=4 SV=1[more]
A0A151RAS0_CAJCA1.3e-3086.96Uncharacterized protein OS=Cajanus cajan GN=KK1_039011 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G76200.14.9e-3479.71 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449455585|ref|XP_004145533.1|1.8e-38100.00PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|659104403|ref|XP_008452937.1|6.4e-3695.52PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|255539152|ref|XP_002510641.1|3.6e-3185.29PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|661888870|emb|CDP07313.1|1.4e-3080.28unnamed protein product [Coffea canephora][more]
gi|18411047|ref|NP_565128.1|1.4e-3079.71uncharacterized protein [Arabidopsis thaliana][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026627NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2
IPR026627NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2
IPR026627NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2
IPR026627NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2
IPR026627NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
GO:0005747mitochondrial respiratory chain complex I
GO:0005743mitochondrial inner membrane
GO:0005747mitochondrial respiratory chain complex I
GO:0005743mitochondrial inner membrane
GO:0005747mitochondrial respiratory chain complex I
GO:0005743mitochondrial inner membrane
GO:0005747mitochondrial respiratory chain complex I
GO:0005743mitochondrial inner membrane
GO:0005747mitochondrial respiratory chain complex I
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.271980.1Cucsa.271980.1mRNA
Cucsa.271980.2Cucsa.271980.2mRNA
Cucsa.271980.3Cucsa.271980.3mRNA
Cucsa.271980.4Cucsa.271980.4mRNA
Cucsa.271980.5Cucsa.271980.5mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026627NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2PANTHERPTHR15223NADH-UBIQUINONE OXIDOREDUCTASE AGGG SUBUNITcoord: 3..66
score: 1.2