CmoCh09G000680 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G000680
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2
Location	Cmo_Chr09 : 304759 .. 306286 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGATTACCACTGGAAATGCGTTGTAGGCTACGAGACCTTGGGCCGAAGGGAAAAGGCCCATTCACTTGATTGGCCCAGCTTGAAAGCCCATTCTATGAGCTTCCCCATAGTCATTTTCAAAATCAAGAGTCAGGTCTCGAGAGTGATTTTAATCCAAGTTTTCATCTTCCTCCTCCTCCTCCGATCATTTCTGCAATCAGATTTTGCTGGTCAATTGAAAGTGCAGAGGCCAATATGGGAGGTGGTGGGCACGGAGCTGGTACGACTTTCAAGGGCATGACCATACACCAGCCAAAACGCTGGCACACCGTCACCGGCAAGGGATTGTGCGCCGTCATGTGGTACAAACCCTAGCTTTGTTAATTCCCGATCGAACATTTCTATTGAAGGAACCTAAATTTGTCTCATGTTTTAGCCAATCTGCGCCATATTTACTTTATTTACCTTCTTTCTCTATCTTTCCAAGTCCTGCATCGTTTCCGATCTGGCCTCATCGGATATTTCTAAATGAATGCATCGCAATCGAGTGGAGTCACAAATTTCATTATTATTTTGATGCTATCTCTTAATACCTTGTCTCGTACACAATTTGACGTCTCTGTGAAAATTAGAAATCGATCGGAATCAGTAGGATTGATAAATTGGCATTGCCAAGCGGTTCAAAATCTGTTTTTTTACCAAATTATTAACTATTATCTTTCAGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGTAAATGTCTTCGTTTTCCAAATCACGAATTACATTTCTACTTACTATTATGTATCTGAATCTCTATTAGTTTTTTCCCATTTTTTCTTTCTTGTCGATGATATATGCCTCAGTATTTATTTTCCATTCCTGGATGTCTTATTCTTGTAATATTTGTAATGATTAGGGCTGGAGACATCCATGGGAAGGCCATGGTGACCATGGACATGATCACTAGGTACCCTTTTCATTATTTACCTCTCTTTTCAGTTTTCTCCAATTAATTGTCTATGTTTATAGATAAAAAAAAGTCAAAACAAAATGTGCCCTGCTGTATTTGCAACACTGAACTATTAACCACTTGATATTAGGGAGTTCTGTTGATAAGTTTTCCAGGTCCTTTGTAGGGTTGCTGTCAATGGTGGGCAGAAGGGGAAATGGCAAAGCTTCAGTTGCAGGTTCCCCTATTTGAATGTTACGAGTACCATATTTGCTGAGTTCTGTTCAAATAAGGATATTGTGATAGCCAAGTGGACATTGACATCACTTCATCATTTTTACTTTGTAATCATGAATTCTTCTGATGTGTTTTGAATATTTGATTTGTGTTCAATCACTGCTGTTGTTGAGTTCAAGCAAAGATCAATGCCTACTTCTGAATTTAGTTTGTTCTTTTGTTTTATTGCTTCTCTTGCTCCAAGTTTACCCTCTTCTTAAATTAAGGTTATTCCATCAGGCTAATTTGATTGGTCCAACCTGAATTTCATGTAATCAATGGTGAAAAAAGCATTCAGGAA

mRNA sequence

TTTGGATTACCACTGGAAATGCGTTGTAGGCTACGAGACCTTGGGCCGAAGGGAAAAGGCCCATTCACTTGATTGGCCCAGCTTGAAAGCCCATTCTATGAGCTTCCCCATAGTCATTTTCAAAATCAAGAGTCAGGTCTCGAGAGTGATTTTAATCCAAGTTTTCATCTTCCTCCTCCTCCTCCGATCATTTCTGCAATCAGATTTTGCTGGTCAATTGAAAGTGCAGAGGCCAATATGGGAGGTGGTGGGCACGGAGCTGGTACGACTTTCAAGGGCATGACCATACACCAGCCAAAACGCTGGCACACCGTCACCGGCAAGGGATTGTGCGCCGTCATGTGGGCTGGAGACATCCATGGGAAGGCCATGGTGACCATGGACATGATCACTAGGGTTGCTGTCAATGGTGGGCAGAAGGGGAAATGGCAAAGCTTCAGTTGCAGGTTCCCCTATTTGAATGTTACGAGTACCATATTTGCTGAGTTCTGTTCAAATAAGGATATTGTGATAGCCAAGTGGACATTGACATCACTTCATCATTTTTACTTTGTAATCATGAATTCTTCTGATGTGTTTTGAATATTTGATTTGTGTTCAATCACTGCTGTTGTTGAGTTCAAGCAAAGATCAATGCCTACTTCTGAATTTAGTTTGTTCTTTTGTTTTATTGCTTCTCTTGCTCCAAGTTTACCCTCTTCTTAAATTAAGGTTATTCCATCAGGCTAATTTGATTGGTCCAACCTGAATTTCATGTAATCAATGGTGAAAAAAGCATTCAGGAA

Coding sequence (CDS)

ATGGGAGGTGGTGGGCACGGAGCTGGTACGACTTTCAAGGGCATGACCATACACCAGCCAAAACGCTGGCACACCGTCACCGGCAAGGGATTGTGCGCCGTCATGTGGGCTGGAGACATCCATGGGAAGGCCATGGTGACCATGGACATGATCACTAGGGTTGCTGTCAATGGTGGGCAGAAGGGGAAATGGCAAAGCTTCAGTTGCAGGTTCCCCTATTTGAATGTTACGAGTACCATATTTGCTGAGTTCTGTTCAAATAAGGATATTGTGATAGCCAAGTGGACATTGACATCACTTCATCATTTTTACTTTGTAATCATGAATTCTTCTGATGTGTTTTGA

Homology

[Close]

BLAST of CmoCh09G000680 vs. Swiss-Prot
Match: NDUB2_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thaliana GN=At1g76200 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-12
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMW 37
          MGGGGHG G T+KG+T+H PK WHTVTGKGLCAVMW
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMW 36

[Close]

BLAST of CmoCh09G000680 vs. TrEMBL
Match: A0A165Y0F8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013903 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.6e-14
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWAGDIHGKAM 46
          MGGGGHG G T+KG+TIHQPKRWHTVTGKG+CA+MWAGDI GKAM
Sbjct: 1  MGGGGHG-GVTYKGVTIHQPKRWHTVTGKGMCAMMWAGDILGKAM 44

[Close]

BLAST of CmoCh09G000680 vs. TrEMBL
Match: G7JPJ0_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g075160 PE=4 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-13
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 1  MGGG-GHG-AGTTFKGMTIHQPKRWHTVTGKGLCAVMWAGDIHGKAMVTMD 50
          MGGG GHG  GTT+KG+TIHQPKRWHTVTGKGLCAVMWAG I G+ MV M+
Sbjct: 1  MGGGHGHGHGGTTYKGVTIHQPKRWHTVTGKGLCAVMWAGGILGRVMVIME 51

[Close]

BLAST of CmoCh09G000680 vs. TrEMBL
Match: A0A0A0L0L4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G653460 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMW 37
          MGGGGHGAGTTFKG+TIH PKRWHTVTGKGLCAVMW
Sbjct: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMW 36

[Close]

BLAST of CmoCh09G000680 vs. TrEMBL
Match: A0A0L9V7N9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g190300 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-10
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1


Query: 4  GGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMW 37
          GGHG GTT+KG+TIHQPKRWHT+TGKGLCAVMW
Sbjct: 2  GGHGEGTTYKGVTIHQPKRWHTITGKGLCAVMW 34

[Close]

BLAST of CmoCh09G000680 vs. TrEMBL
Match: I1LIR4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G099500 PE=4 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-10
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1


Query: 3  GGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMW 37
          GGGHG GTT+KG+T+H PKRWHT+TGKGLCAVMW
Sbjct: 2  GGGHGHGTTYKGVTVHHPKRWHTITGKGLCAVMW 35

[Close]

BLAST of CmoCh09G000680 vs. TAIR10
Match: AT1G76200.1 (AT1G76200.1 unknown protein)

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-13
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMW 37
          MGGGGHG G T+KG+T+H PK WHTVTGKGLCAVMW
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMW 36

[Close]

BLAST of CmoCh09G000680 vs. NCBI nr
Match: gi|1021040954|gb|KZM98735.1| (hypothetical protein DCAR_013903 [Daucus carota subsp. sativus])

HSP 1 Score: 85.5 bits (210), Expect = 6.6e-14
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWAGDIHGKAM 46
          MGGGGHG G T+KG+TIHQPKRWHTVTGKG+CA+MWAGDI GKAM
Sbjct: 1  MGGGGHG-GVTYKGVTIHQPKRWHTVTGKGMCAMMWAGDILGKAM 44

[Close]

BLAST of CmoCh09G000680 vs. NCBI nr
Match: gi|922363042|ref|XP_003607260.2| (hypothetical protein MTR_4g075160 [Medicago truncatula])

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-13
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 1  MGGG-GHG-AGTTFKGMTIHQPKRWHTVTGKGLCAVMWAGDIHGKAMVTMD 50
          MGGG GHG  GTT+KG+TIHQPKRWHTVTGKGLCAVMWAG I G+ MV M+
Sbjct: 1  MGGGHGHGHGGTTYKGVTIHQPKRWHTVTGKGLCAVMWAGGILGRVMVIME 51

[Close]

BLAST of CmoCh09G000680 vs. NCBI nr
Match: gi|449455585|ref|XP_004145533.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMW 37
          MGGGGHGAGTTFKG+TIH PKRWHTVTGKGLCAVMW
Sbjct: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMW 36

[Close]

BLAST of CmoCh09G000680 vs. NCBI nr
Match: gi|659104403|ref|XP_008452937.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 78.6 bits (192), Expect = 8.0e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMW 37
          MGGGGHGAGTT+KG+TIH PKRWHTVTGKGLCA+MW
Sbjct: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMW 36

[Close]

BLAST of CmoCh09G000680 vs. NCBI nr
Match: gi|502144454|ref|XP_004505703.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1


Query: 2  GGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMW 37
          GG GHG GTT+KG+TIHQPKRWHTVTGKGLCAVMW
Sbjct: 4  GGHGHGGGTTYKGVTIHQPKRWHTVTGKGLCAVMW 38

The following BLAST results are available for this feature:

BLAST of CmoCh09G000680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUB2_ARATH	3.6e-12	80.56	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thali...	[more]

BLAST of CmoCh09G000680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A165Y0F8_DAUCA	4.6e-14	84.44	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013903 PE=4 SV=1	[more]
G7JPJ0_MEDTR	1.7e-13	78.43	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g075160 PE=4 SV=2	[more]
A0A0A0L0L4_CUCSA	1.9e-12	94.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G653460 PE=4 SV=1	[more]
A0A0L9V7N9_PHAAN	1.8e-10	87.88	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g190300 PE=4 SV=1	[more]
I1LIR4_SOYBN	4.0e-10	82.35	Uncharacterized protein OS=Glycine max GN=GLYMA_11G099500 PE=4 SV=2	[more]

BLAST of CmoCh09G000680 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76200.1	2.0e-13	80.56	unknown protein	[more]

BLAST of CmoCh09G000680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1021040954\|gb\|KZM98735.1\|	6.6e-14	84.44	hypothetical protein DCAR_013903 [Daucus carota subsp. sativus]	[more]
gi\|922363042\|ref\|XP_003607260.2\|	2.5e-13	78.43	hypothetical protein MTR_4g075160 [Medicago truncatula]	[more]
gi\|449455585\|ref\|XP_004145533.1\|	2.8e-12	94.44	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|659104403\|ref\|XP_008452937.1\|	8.0e-12	88.89	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|502144454\|ref\|XP_004505703.1\|	1.5e-10	88.57	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G000680.1	CmoCh09G000680.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G000680	Cucsa.271980	Cucumber (Gy14) v1	cgycmoB0742
CmoCh09G000680	CmaCh09G000670	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G000680	Cla007399	Watermelon (97103) v1	cmowmB021
CmoCh09G000680	Csa4G653460	Cucumber (Chinese Long) v2	cmocuB015
CmoCh09G000680	ClCG05G015200	Watermelon (Charleston Gray)	cmowcgB018
CmoCh09G000680	Cp4.1LG06g00290	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G000680	CsaV3_4G037120	Cucumber (Chinese Long) v3	cmocucB0020
CmoCh09G000680	Cla97C05G096300	Watermelon (97103) v2	cmowmbB017
CmoCh09G000680	Bhi09G002416	Wax gourd	cmowgoB0023
CmoCh09G000680	CsGy4G025100	Cucumber (Gy14) v2	cgybcmoB438

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G000680	Melon (DHL92) v3.6.1	cmomedB026
CmoCh09G000680	Silver-seed gourd	carcmoB0144
CmoCh09G000680	Silver-seed gourd	carcmoB0484
CmoCh09G000680	Cucurbita maxima (Rimu)	cmacmoB435
CmoCh09G000680	Cucurbita moschata (Rifu)	cmocmoB017
CmoCh09G000680	Wild cucumber (PI 183967)	cmocpiB016
CmoCh09G000680	Melon (DHL92) v3.5.1	cmomeB026
CmoCh09G000680	Cucurbita pepo (Zucchini)	cmocpeB020
CmoCh09G000680	Bottle gourd (USVL1VR-Ls)	cmolsiB012