CsaV3_4G037120 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G037120
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2
Location	chr4 : 26059234 .. 26061588 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCAATCTCGAGCTTCCATCTTCTTCATTCGATCCTTTCTGCAGTCGGAATTCGGTGATCAGTTGAAAGTGCAGAAGCCAATTATGGGAGGCGGTGGACATGGAGCTGGAACTACTTTCAAGGGCGTGACCATACACCCGCCAAAGCGATGGCACACCGTCACCGGCAAGGGACTGTGCGCCGTTATGTGGTATAAACCCTAGCTTCATTAGTTTCCGATCGACAAATTCTATTGAAGGAAACTAAATTTGATTTTCTCTTTTCAGCCAAATTGCCCCATAGTTAATTTCTTTACTTTCTTTCTCTGTTTTACAAGTCCTGCGTCTAGTCCGATCTGTCCTCATCGCATTATTCCAAATAAACGCATCGCGATCGAGTGGAGTTACAAGTTTTAATATTATCTTGATGCCAGATGCTATATTTGAGTTCATCGTCTCGTATGCAATTTGATGTTGAGTGGAAATTAAAAGAGCTTCAGAATCTGTAGGATTGACTATTGAGAAATTGGCATCTGGGTATTGACCAGATTTTTTATGACTGTCTTTCAGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGTAAAAATCACTGTTCCCTTAGTCGTAAATTACATTTCTACTTATTTTTGGTTAAAATCTCTAGATTTTCTGGCTGAAGTTCTTGAGGATATACATGTTAGAGGGCATCTTTTGGAGCGATTTTAAAATGGTTAAAATCATTTAGTTGTTTTCAAATTCAGTATGAAAAATTCAATTAGAAGTGTAAAATTGAACATTAAATTGATTTTAGGTGATTAAAGCTTAACTTTATGTTTCAAAGTTATTTTAAATATGACAAAAAGTGACGTTAACCATTTTCTGAACACTTGGTTGCCATTTTTAGCTTACATTGTATGTATTTTCTATTACAGAAAATCTTACTTTTGTAATATTTGTTACGATCAGGGCTGGAGACATCCATGGGAAGGTCATGGTCATGGTGATCATGGAAATGAGCACTAGGTACTGTTTTTATGATTTACCTCTCTTTCCAAATTTCCCCAATTAATTATCTGTTTTTATAGAGAGAAAAAGTCAAAACAAAGTGTGTCCTAGCTTTCTGATATAATTACAACACTGAACTATTAGCCACTTGACATCAGGTAATATGAGCGCTATCAGCTATGGGAACTTTTTTTCTTTGATTGGAGTACATTTCTATTGATAAGCTTTCCAGTTTACTTGTAGGCTTCCTGCTAATGGTGGGCGAAGGGGAAATGGCAAGGCCTCAGTTGCAGGTTCTCTATTTGAATGTTCAGAGTACCATATTTGCTAAGTTCTGTTCAAATAAGGATATTGTGATAGCCAAATGGATATAAACACCACTTCATCATTTTTATTTTGTAATCATGAATTCTTCTGATGTGTTTTGAATATTTAATTTGTGTTCAATCACCGCTGTTGTTGAGTTGAAGCAAAGATCAATTCCCTATTTCTGAATATAGGCTGTACTTTTATTTCACTATGTCTTTTGCATGGCGCATACCTTTCTTTTAAACTAAGGTTGTTCCATTTGGATAATTTGATCTGCTCAAACTGAAATTCATGTACCAATGGTGATGAAGTATTAGTGAATTGCTACCCTTGAATCTAGTGTCACAACAATGGGATTTTATTTGCCATGAGACAGTTACAGGCATTGTATTTGCATAATTCCTCTAGAAACTTAACTGAAGTGATACGAAGAATGCATA

mRNA sequence

ATGGGAGGCGGTGGACATGGAGCTGGAACTACTTTCAAGGGCGTGACCATACACCCGCCAAAGCGATGGCACACCGTCACCGGCAAGGGACTGTGCGCCGTTATGTGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGGCTGGAGACATCCATGGGAAGGTCATGGTCATGGTGATCATGGAAATGAGCACTAG

Coding sequence (CDS)

ATGGGAGGCGGTGGACATGGAGCTGGAACTACTTTCAAGGGCGTGACCATACACCCGCCAAAGCGATGGCACACCGTCACCGGCAAGGGACTGTGCGCCGTTATGTGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGGCTGGAGACATCCATGGGAAGGTCATGGTCATGGTGATCATGGAAATGAGCACTAG

Protein sequence

MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGHGDHGNEH

Homology

[Close]

BLAST of CsaV3_4G037120 vs. NCBI nr
Match: XP_004145533.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis sativus] >XP_011654263.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis sativus] >KGN55485.1 hypothetical protein Csa_4G653460 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 3.9e-37
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGDHGNEH 70
          GHGDHGNEH
Sbjct: 61 GHGDHGNEH 69

[Close]

BLAST of CsaV3_4G037120 vs. NCBI nr
Match: XP_008452937.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis melo] >XP_008452938.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 3.4e-33
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTT+KGVTIHPPKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGD 65
          GHGD
Sbjct: 61 GHGD 64

[Close]

BLAST of CsaV3_4G037120 vs. NCBI nr
Match: XP_022936519.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita moschata] >XP_022936520.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita moschata] >XP_022975909.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita maxima] >XP_022975910.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita maxima] >XP_023534987.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita pepo subsp. pepo] >XP_023534988.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.0 bits (367), Expect = 4.9e-32
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTTFKG+TIH PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWE  
Sbjct: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWE-- 60

Query: 61 GHGDHGNEH 70
          GHGDHG++H
Sbjct: 61 GHGDHGHDH 67

[Close]

BLAST of CsaV3_4G037120 vs. NCBI nr
Match: XP_022132798.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Momordica charantia] >XP_022132809.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Momordica charantia] >XP_022132821.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Momordica charantia])

HSP 1 Score: 142.5 bits (358), Expect = 5.4e-31
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 3  GGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGH 62
          GGGHGAGTT+KG+TIH PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWE  GH
Sbjct: 2  GGGHGAGTTYKGITIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWE--GH 61

Query: 63 GDHGNEH 70
          GDHG+EH
Sbjct: 62 GDHGHEH 66

[Close]

BLAST of CsaV3_4G037120 vs. NCBI nr
Match: XP_002510641.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Ricinus communis] >EEF52828.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 139.0 bits (349), Expect = 6.0e-30
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 3  GGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG- 62
          GGGHG G T+KGVTIH PKRWH++TGKGLCAVMWFW+LYRAKQDGPVVLGWRHPWEGHG 
Sbjct: 2  GGGHGEGYTYKGVTIHQPKRWHSITGKGLCAVMWFWILYRAKQDGPVVLGWRHPWEGHGD 61

Query: 63 HGDHGNEH 70
          HG HG+EH
Sbjct: 62 HGSHGHEH 69

[Close]

BLAST of CsaV3_4G037120 vs. TAIR10
Match: AT1G76200.1 (unknown protein)

HSP 1 Score: 136.7 bits (343), Expect = 5.4e-33
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHG G T+KGVT+H PK WHTVTGKGLCAVMWFW+LYRAKQDGPVV+GWRHPW+GH
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVMGWRHPWDGH 60

Query: 61 GHGDHGNEH 70
          G   HG+ H
Sbjct: 61 GDHGHGDHH 69

[Close]

BLAST of CsaV3_4G037120 vs. Swiss-Prot
Match: sp|Q8LDK3|NDUB2_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At1g76200 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 9.7e-32
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHG G T+KGVT+H PK WHTVTGKGLCAVMWFW+LYRAKQDGPVV+GWRHPW+GH
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVMGWRHPWDGH 60

Query: 61 GHGDHGNEH 70
          G   HG+ H
Sbjct: 61 GDHGHGDHH 69

[Close]

BLAST of CsaV3_4G037120 vs. TrEMBL
Match: tr|A0A0A0L0L4|A0A0A0L0L4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653460 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-37
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGDHGNEH 70
          GHGDHGNEH
Sbjct: 61 GHGDHGNEH 69

[Close]

BLAST of CsaV3_4G037120 vs. TrEMBL
Match: tr|A0A1S3BV22|A0A1S3BV22_CUCME (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103493798 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-33
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTT+KGVTIHPPKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGD 65
          GHGD
Sbjct: 61 GHGD 64

[Close]

BLAST of CsaV3_4G037120 vs. TrEMBL
Match: tr|B9R8J8|B9R8J8_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1600460 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.9e-30
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 3  GGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG- 62
          GGGHG G T+KGVTIH PKRWH++TGKGLCAVMWFW+LYRAKQDGPVVLGWRHPWEGHG 
Sbjct: 2  GGGHGEGYTYKGVTIHQPKRWHSITGKGLCAVMWFWILYRAKQDGPVVLGWRHPWEGHGD 61

Query: 63 HGDHGNEH 70
          HG HG+EH
Sbjct: 62 HGSHGHEH 69

[Close]

BLAST of CsaV3_4G037120 vs. TrEMBL
Match: tr|A0A1R3K7H4|A0A1R3K7H4_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02628 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.7e-30
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHG  TT+KGVT+H PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGGSTTYKGVTLHHPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGDHGNEH 70
              HG++H
Sbjct: 61 DDHGHGDKH 69

[Close]

BLAST of CsaV3_4G037120 vs. TrEMBL
Match: tr|A0A1R3ISD8|A0A1R3ISD8_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21601 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.7e-30
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHG  TT+KGVT+H PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGGSTTYKGVTLHHPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGDHGNEH 70
              HG++H
Sbjct: 61 DDHGHGDKH 69

The following BLAST results are available for this feature:

BLAST of CsaV3_4G037120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145533.1	3.9e-37	100.00	PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis ...	[more]
XP_008452937.1	3.4e-33	96.88	PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis ...	[more]
XP_022936519.1	4.9e-32	91.30	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita moschata]...	[more]
XP_022132798.1	5.4e-31	91.04	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Momordica charantia...	[more]
XP_002510641.1	6.0e-30	85.29	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Ricinus communis] >...	[more]

BLAST of CsaV3_4G037120 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76200.1	5.4e-33	79.71	unknown protein	[more]

BLAST of CsaV3_4G037120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LDK3\|NDUB2_ARATH	9.7e-32	79.71	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thali...	[more]

BLAST of CsaV3_4G037120 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0L4\|A0A0A0L0L4_CUCSA	2.6e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653460 PE=4 SV=1	[more]
tr\|A0A1S3BV22\|A0A1S3BV22_CUCME	2.2e-33	96.88	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucumis melo OX=3...	[more]
tr\|B9R8J8\|B9R8J8_RICCO	3.9e-30	85.29	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1600460 PE=4 SV=1	[more]
tr\|A0A1R3K7H4\|A0A1R3K7H4_COCAP	6.7e-30	84.06	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02628 PE=4 ...	[more]
tr\|A0A1R3ISD8\|A0A1R3ISD8_9ROSI	6.7e-30	84.06	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21601 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G037120.1	CsaV3_4G037120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36987	FAMILY NOT NAMED	coord: 4..66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G037120	CSPI04G26760	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G037120	Cucsa.271980	Cucumber (Gy14) v1	cgycucB415
CsaV3_4G037120	CmaCh09G000680	Cucurbita maxima (Rimu)	cmacucB0031
CsaV3_4G037120	CmoCh09G000680	Cucurbita moschata (Rifu)	cmocucB0020
CsaV3_4G037120	Cp4.1LG06g00290	Cucurbita pepo (Zucchini)	cpecucB0974
CsaV3_4G037120	CsGy4G025100	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G037120	Carg08642	Silver-seed gourd	carcucB0122
CsaV3_4G037120	Cla007399	Watermelon (97103) v1	cucwmB337
CsaV3_4G037120	MELO3C017010	Melon (DHL92) v3.5.1	cucmeB316
CsaV3_4G037120	ClCG05G015200	Watermelon (Charleston Gray)	cucwcgB329
CsaV3_4G037120	MELO3C017010.2	Melon (DHL92) v3.6.1	cucmedB308
CsaV3_4G037120	Cla97C05G096300	Watermelon (97103) v2	cucwmbB317
CsaV3_4G037120	Bhi09G002416	Wax gourd	cucwgoB426

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G037120	Silver-seed gourd	carcucB0392
CsaV3_4G037120	Cucurbita maxima (Rimu)	cmacucB0554
CsaV3_4G037120	Cucurbita moschata (Rifu)	cmocucB0540
CsaV3_4G037120	Cucurbita pepo (Zucchini)	cpecucB0310
CsaV3_4G037120	Cucurbita pepo (Zucchini)	cpecucB0709
CsaV3_4G037120	Bottle gourd (USVL1VR-Ls)	cuclsiB305