Carg08642 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08642
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2
Location	Cucurbita_argyrosperma_scaffold_057 : 289970 .. 291883 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATCCAAGTTTTCATCTTCCTCCTTCGATCATTTCTGCAATCAGATTTTGCTGGTCAATTGAAAGTGCAGAGGCCAATATGGGAGGTGGTGGGCACGGAGCTGGTACAACTTTCAAGGGCATGACCATACACCAGCCAAAACGCTGGCACACCGTCACCGGCAAGGGATTGTGCGCCGTCATGTGGTACAAACCCTAGCTTTGTTAATTCCCGATCGAACATTTCTATTGAAGGAACCTAAATTTGTCTCATGTTTCAGCCAATCTGCGCCATTTTTACTTTATTTACCTTCTTTCTCTGTCTTACCAAGTTCTGCATCGTTTCCGATCTGGCCTCATCGGATATTTCTAAATGAATGCATCGCAATCGAGTGGATTCACAAATTTCATTATTATTTTGATGCTATCTCTTAATACCTTGTCTCGTACACAATTTTACGTCTCTGTGAAAATTAGAAATCGATCAGAATCAGTAGGATTGATAAATTGGCATTTCCAAGCGGTTCAAAATCTGGTTTTTTACCAAATTATTAACTATTATCTTTCAGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGTAAATGTCATCGTTTTCCAAATCACGAATTACATTTCTACTTACTCTTATGTATCTGAATCTCTAATAGTTTTTTCCCATTTTTTCTTTCTTGTCGATGATATATGCCTCAGTATTTATTTTCTAGATGTCTTATTCTTGTAATATTTGTAATGATTAGGGCTGGAGACATCCATGGGAAGGCCATGGTGACCATGGACATGATCACTAGGTACCCTTTTCATTATTTACCTCTCTTTTCAGTTTTCTCGAATTAATTGTCTATGTTTATAGATAAAAAAAGTCAAAACAAAATGTGTCCTGCTGTATTTGCAACACTGAACTATTAACCACTTGATATTAGGGAGTTCTGTTGATAAGTTTTCCAGGTCCTTTGTAGGGTTGCTGTCAATGGTGGGCAGAAGGGGATATGGCAAAGCTTCAGTTGCAGGTTCCCTATTTGAATGTTACGAGTACCATATTTGCTGAGTTCTGTTCAAATAAGGATATTGTGATGGCCAAGTGGACATTGACATCACTTCATCATTTTTACTTTGTAATCATGAATTCTTCTGATGTGTTTTGAATATTTGATTTGTGTTCAATCACTGCTGTTGTGGAGTTCAAGCAAAGATCAATGCCTACTTCTGAATTTAGTTTGTTCTTTTGTTTTATTGCTTCTCTTGCCCCAAGTTTACCCTCTTCTTAAATTAAGGTTATTCCATCAGGCTAATTTGATTGGTCCAACCTGAATTTCATGTAATCAATGGTGAAAAAAGCATTCAGGAATTTATCTGCCGTGAGACAGTTATAGGCACTGTACTTTTTTAAAAATAGAAACTTAACTGAAGAGGTATCAAGAATGCATAGAAATAGAGAATTGGTTAATCTTGAAAGAGCATTCCAGTTTCTCAGCTTTCTGAATGCTAAATTCCAAAGCCTCACAGTTGCCTCTAGGGCTCTCTGCAGTACAGCAATATTGTTATTTCATGGGTAGCTCGTGTATATAGATACCAATTTCAATGCAAACTCAGTATCTGTTTGCTTGCTGGGAGGTAATCCTTAGGGAGACGATTCCTCCAAAGTTCCACTGAGACTAAGTTATGGATAAATTGCCCCCGTTAACTCCGAGCCAACAAAAGTTCTCTCTTCTCAGTAACACTTACGGGAGTATACCATTTCTTAAGTTGTTGTAGAAAATGCGTTTAAAATGCCATTTCAGATCCTTCTATTGAAAACTTGGATCGATTCAGTTCAACAAACGGAGCAGGAGTGATTGAAAGGGTTGGATTTGGACACAACTTCATTGCAGTTGAGAGCTCTCATTTTGAAGGCATCTGA

mRNA sequence

TAATCCAAGTTTTCATCTTCCTCCTTCGATCATTTCTGCAATCAGATTTTGCTGGTCAATTGAAAGTGCAGAGGCCAATATGGGAGGTGGTGGGCACGGAGCTGGTACAACTTTCAAGGGCATGACCATACACCAGCCAAAACGCTGGCACACCGTCACCGGCAAGGGATTGTGCGCCGTCATGTGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGTATTTATTTTCTAGATGTCTTATTCTTGTAATATTTGTAATGATTAGGGCTGGAGACATCCATGGGAAGGCCATGGTGACCATGGACATGATCACTAGGTCCTTTGTAGGGTTGCTGTCAATGGTGGGCAGAAGGGGATATGGCAAAGCTTCAGTTGCAGATCCTTCTATTGAAAACTTGGATCGATTCAGTTCAACAAACGGAGCAGGAGTGATTGAAAGGGTTGGATTTGGACACAACTTCATTGCAGTTGAGAGCTCTCATTTTGAAGGCATCTGA

Coding sequence (CDS)

ATGGGAGGTGGTGGGCACGGAGCTGGTACAACTTTCAAGGGCATGACCATACACCAGCCAAAACGCTGGCACACCGTCACCGGCAAGGGATTGTGCGCCGTCATGTGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGTATTTATTTTCTAGATGTCTTATTCTTGTAATATTTGTAATGATTAGGGCTGGAGACATCCATGGGAAGGCCATGGTGACCATGGACATGATCACTAGGTCCTTTGTAGGGTTGCTGTCAATGGTGGGCAGAAGGGGATATGGCAAAGCTTCAGTTGCAGATCCTTCTATTGAAAACTTGGATCGATTCAGTTCAACAAACGGAGCAGGAGTGATTGAAAGGGTTGGATTTGGACACAACTTCATTGCAGTTGAGAGCTCTCATTTTGAAGGCATCTGA

Protein sequence

MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLYLFSRCLILVIFVMIRAGDIHGKAMVTMDMITRSFVGLLSMVGRRGYGKASVADPSIENLDRFSSTNGAGVIERVGFGHNFIAVESSHFEGI

Homology

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BLAST of Carg08642 vs. NCBI nr
Match: XP_022936519.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita moschata] >XP_022936520.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita moschata] >XP_022975909.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita maxima] >XP_022975910.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita maxima] >XP_023534987.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita pepo subsp. pepo] >XP_023534988.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.3 bits (290), Expect = 8.5e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 52
          MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL
Sbjct: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 51

[Close]

BLAST of Carg08642 vs. NCBI nr
Match: XP_004145533.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis sativus] >XP_011654263.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis sativus] >KGN55485.1 hypothetical protein Csa_4G653460 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 52
          MGGGGHGAGTTFKG+TIH PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL
Sbjct: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 51

[Close]

BLAST of Carg08642 vs. NCBI nr
Match: XP_008452937.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis melo] >XP_008452938.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 3.6e-21
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 52
          MGGGGHGAGTT+KG+TIH PKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVL
Sbjct: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVL 51

[Close]

BLAST of Carg08642 vs. NCBI nr
Match: XP_022132798.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Momordica charantia] >XP_022132809.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Momordica charantia] >XP_022132821.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 7.9e-21
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 3  GGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 52
          GGGHGAGTT+KG+TIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL
Sbjct: 2  GGGHGAGTTYKGITIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 50

[Close]

BLAST of Carg08642 vs. NCBI nr
Match: OMO85481.1 (hypothetical protein COLO4_21601 [Corchorus olitorius] >OMP02996.1 hypothetical protein CCACVL1_02628 [Corchorus capsularis])

HSP 1 Score: 107.1 bits (266), Expect = 5.1e-20
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 52
          MGGGGHG  TT+KG+T+H PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL
Sbjct: 1  MGGGGHGGSTTYKGVTLHHPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 51

[Close]

BLAST of Carg08642 vs. TAIR10
Match: AT1G76200.1 (unknown protein)

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-22
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 52
          MGGGGHG G T+KG+T+H PK WHTVTGKGLCAVMWFW+LYRAKQDGPVV+
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVM 51

[Close]

BLAST of Carg08642 vs. Swiss-Prot
Match: sp|Q8LDK3|NDUB2_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At1g76200 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-21
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 52
          MGGGGHG G T+KG+T+H PK WHTVTGKGLCAVMWFW+LYRAKQDGPVV+
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVM 51

[Close]

BLAST of Carg08642 vs. TrEMBL
Match: tr|A0A0A0L0L4|A0A0A0L0L4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653460 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.1e-22
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 52
          MGGGGHGAGTTFKG+TIH PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL
Sbjct: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 51

[Close]

BLAST of Carg08642 vs. TrEMBL
Match: tr|A0A1S3BV22|A0A1S3BV22_CUCME (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103493798 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.4e-21
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 52
          MGGGGHGAGTT+KG+TIH PKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVL
Sbjct: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVL 51

[Close]

BLAST of Carg08642 vs. TrEMBL
Match: tr|A0A1R3K7H4|A0A1R3K7H4_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02628 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 52
          MGGGGHG  TT+KG+T+H PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL
Sbjct: 1  MGGGGHGGSTTYKGVTLHHPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 51

[Close]

BLAST of Carg08642 vs. TrEMBL
Match: tr|A0A1R3ISD8|A0A1R3ISD8_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21601 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 52
          MGGGGHG  TT+KG+T+H PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL
Sbjct: 1  MGGGGHGGSTTYKGVTLHHPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 51

[Close]

BLAST of Carg08642 vs. TrEMBL
Match: tr|A0A1S3TFG6|A0A1S3TFG6_VIGRR (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106754955 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.6e-20
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 4  GGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVL 52
          GGHG GTT+KG+TIHQPKRWHT+TGKGLCAVMWFWVLYRAKQDGPVVL
Sbjct: 2  GGHGEGTTYKGVTIHQPKRWHTITGKGLCAVMWFWVLYRAKQDGPVVL 49

The following BLAST results are available for this feature:

BLAST of Carg08642 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936519.1	8.5e-23	100.00	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita moschata]...	[more]
XP_004145533.1	1.2e-21	96.08	PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis ...	[more]
XP_008452937.1	3.6e-21	92.16	PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis ...	[more]
XP_022132798.1	7.9e-21	95.92	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Momordica charantia...	[more]
OMO85481.1	5.1e-20	88.24	hypothetical protein COLO4_21601 [Corchorus olitorius] >OMP02996.1 hypothetical ...	[more]

BLAST of Carg08642 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76200.1	1.0e-22	82.35	unknown protein	[more]

BLAST of Carg08642 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LDK3\|NDUB2_ARATH	1.9e-21	82.35	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thali...	[more]

BLAST of Carg08642 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0L4\|A0A0A0L0L4_CUCSA	8.1e-22	96.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653460 PE=4 SV=1	[more]
tr\|A0A1S3BV22\|A0A1S3BV22_CUCME	2.4e-21	92.16	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucumis melo OX=3...	[more]
tr\|A0A1R3K7H4\|A0A1R3K7H4_COCAP	3.4e-20	88.24	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02628 PE=4 ...	[more]
tr\|A0A1R3ISD8\|A0A1R3ISD8_9ROSI	3.4e-20	88.24	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21601 PE=4 SV=1	[more]
tr\|A0A1S3TFG6\|A0A1S3TFG6_VIGRR	7.6e-20	91.67	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Vigna radiata var...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08642-RA	Carg08642-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36987	FAMILY NOT NAMED	coord: 4..51

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08642	Cla007399	Watermelon (97103) v1	carwmB0103
Carg08642	Csa4G653460	Cucumber (Chinese Long) v2	carcuB0113
Carg08642	MELO3C017010	Melon (DHL92) v3.5.1	carmeB0107
Carg08642	ClCG05G015200	Watermelon (Charleston Gray)	carwcgB0105
Carg08642	CSPI04G26760	Wild cucumber (PI 183967)	carcpiB0118
Carg08642	Cucsa.271980	Cucumber (Gy14) v1	carcgyB0125
Carg08642	CmaCh09G000680	Cucurbita maxima (Rimu)	carcmaB0134
Carg08642	CmoCh09G000670	Cucurbita moschata (Rifu)	carcmoB0144
Carg08642	Cp4.1LG06g00290	Cucurbita pepo (Zucchini)	carcpeB0154
Carg08642	CsGy4G025100	Cucumber (Gy14) v2	carcgybB0113
Carg08642	MELO3C017010.2	Melon (DHL92) v3.6.1	carmedB0109
Carg08642	CsaV3_4G037120	Cucumber (Chinese Long) v3	carcucB0122
Carg08642	Cla97C05G096300	Watermelon (97103) v2	carwmbB0108
Carg08642	Bhi09G002416	Wax gourd	carwgoB0119

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08642	Silver-seed gourd	carcarB120
Carg08642	Silver-seed gourd	carcarB122
Carg08642	Cucurbita maxima (Rimu)	carcmaB0136
Carg08642	Cucurbita moschata (Rifu)	carcmoB0146
Carg08642	Cucurbita pepo (Zucchini)	carcpeB0153
Carg08642	Bottle gourd (USVL1VR-Ls)	carlsiB094
Carg08642	Watermelon (97103) v1	carwmB0102