CSPI03G07550 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G07550
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 6618744 .. 6619587 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATCTAACCCCAGATAGCTACGTCAATTGCTGATGCTAATTTCAAACTTTGATGAAATCCTACGCTTTGTATCTTGTCTACAATCACTTGCCAAATAAAATCCTTCTGTCCCTATACAGCCATCTCTCTCTCTCTCCCTCCCTCCCACTTTCTCTGTTTTTTCTTTTCTTTCTTTTTGGTTCAGCCATTTCTAGTTCTTCTGAAGAGCTTATTAGGTGAGTTTGTAGTAATGGATCAAACATGGAGATTTGCAAGGGGTGGAGATGAAGAAGCTGGATTTCCAATGGAGTCAGCAATGAAAGAAGAAGATAGAGATAAGAAGAGGAATGGGAATATGAAGAGTTGTAAGATAGCAACTTGGGTGATTTCAATGGTAGTGGCATGCCTGACGGGAGGACTTGTTTTTGGTTGGTGGGTGTTTCAGTTTCATCCAACAAATAGACAACTATGGATGGTACCTTTTAGTCTTGTTTTGATGATTGCACCCATATTTGTTATGATGTCTCTTCTTATCTCTGCTTTCTGCAATTCCATGGATCAAACTACTACTTCTGCAGCTCCATCCTCAGACCATGTCATCCACCAATCTGTTCAAATTCGATGATCATTTATATACAATTTTACTTTGCCATTACAACAATTCTTCCTTTTTATTTCCTTCTCAAGTTTCTTAGGTTACAAGACTGTAAATGTTTCTCCTGAAAAAGAGTTATATATCAGATACATTTGGCTGAGCCTAATCAGAAATGTATCATAGTTGACTACGACAACTATGAGATTGAAGGCTTAAAAAAACCTTTAACTTTGGTTCAAATTTTGACTCATGTGGTTGGTTGTAATC

mRNA sequence

ATGGATCAAACATGGAGATTTGCAAGGGGTGGAGATGAAGAAGCTGGATTTCCAATGGAGTCAGCAATGAAAGAAGAAGATAGAGATAAGAAGAGGAATGGGAATATGAAGAGTTGTAAGATAGCAACTTGGGTGATTTCAATGGTAGTGGCATGCCTGACGGGAGGACTTGTTTTTGGTTGGTGGGTGTTTCAGTTTCATCCAACAAATAGACAACTATGGATGGTACCTTTTAGTCTTGTTTTGATGATTGCACCCATATTTGTTATGATGTCTCTTCTTATCTCTGCTTTCTGCAATTCCATGGATCAAACTACTACTTCTGCAGCTCCATCCTCAGACCATGTCATCCACCAATCTGTTCAAATTCGATGA

Coding sequence (CDS)

ATGGATCAAACATGGAGATTTGCAAGGGGTGGAGATGAAGAAGCTGGATTTCCAATGGAGTCAGCAATGAAAGAAGAAGATAGAGATAAGAAGAGGAATGGGAATATGAAGAGTTGTAAGATAGCAACTTGGGTGATTTCAATGGTAGTGGCATGCCTGACGGGAGGACTTGTTTTTGGTTGGTGGGTGTTTCAGTTTCATCCAACAAATAGACAACTATGGATGGTACCTTTTAGTCTTGTTTTGATGATTGCACCCATATTTGTTATGATGTCTCTTCTTATCTCTGCTTTCTGCAATTCCATGGATCAAACTACTACTTCTGCAGCTCCATCCTCAGACCATGTCATCCACCAATCTGTTCAAATTCGATGA

Homology

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BLAST of CSPI03G07550 vs. TrEMBL
Match: A0A0A0L5S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118200 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.5e-63
Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 1


Query: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60
           MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG
Sbjct: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60

Query: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIHQS 120
           WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVI QS
Sbjct: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS 120

Query: 121 VQIR 125
           VQ R
Sbjct: 121 VQTR 124

[Close]

BLAST of CSPI03G07550 vs. TrEMBL
Match: A0A0A0L8F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118220 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.0e-14
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 1


Query: 14  EAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQL 73
           + G  +E  MK E   KK+    +  K     + +V+  ++G  + GWW  +FH + +Q 
Sbjct: 2   QVGIEIEDVMKGEGEQKKQKN--RKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQ 61

Query: 74  WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 116
           WMVPFSLVLMIAPIFV++S+ IS+FCNSMD+  +S   S DH
Sbjct: 62  WMVPFSLVLMIAPIFVLISVSISSFCNSMDR-ISSLVSSLDH 100

[Close]

BLAST of CSPI03G07550 vs. TrEMBL
Match: F6I2X1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02750 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 1


Query: 16  GFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQLWM 75
           GF +  +  +E+++    G  K  K    ++      L GGL   WW F++HPTN QLWM
Sbjct: 19  GFVLMGSCDQEEKEVDYEGTQKLAKTFVALLWSFFISLGGGLTLVWWEFEYHPTNSQLWM 78

Query: 76  VPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 116
           VPF L++++ P+ V  S+ +S  CNS     +++   S H
Sbjct: 79  VPFGLIMLVTPVIVCFSVFVSDICNSSSGQLSASLDDSVH 118

[Close]

BLAST of CSPI03G07550 vs. TrEMBL
Match: A0A151SWF1_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_014556 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.4e-10
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1


Query: 29  DKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQLWMVPFSLVLMIAPIF 88
           D K N  +         IS ++  + GG + GWW++++HPTNRQLWMVPF L+L + P+ 
Sbjct: 13  DYKENQGITKPSYMMMFISSLLISIVGGSLLGWWLYKYHPTNRQLWMVPFGLILFLTPVI 72

Query: 89  VMMSLLISAFCNSMDQ 105
           V +SL+IS  C S ++
Sbjct: 73  VWLSLIISDLCISTNK 88

[Close]

BLAST of CSPI03G07550 vs. TrEMBL
Match: A0A0B2Q2T6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_013112 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.5e-10
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 1


Query: 16  GFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQLWM 75
           G P +    + +  K+  G  KS  +  ++ S++++ + GG + GWW+ ++HPTNRQLWM
Sbjct: 2   GTPRDFENGDYEYYKENQGITKSYYLIIFISSLLISII-GGSMLGWWLHKYHPTNRQLWM 61

Query: 76  VPFSLVLMIAPIFVMMSLLISAFCNS 102
           VPF L+L++ P+ V +SL+IS  C S
Sbjct: 62  VPFGLILLLTPVLVWLSLIISDLCIS 86

[Close]

BLAST of CSPI03G07550 vs. NCBI nr
Match: gi|700201251|gb|KGN56384.1| (hypothetical protein Csa_3G118200 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 6.4e-63
Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 1


Query: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60
           MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG
Sbjct: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60

Query: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIHQS 120
           WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVI QS
Sbjct: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS 120

Query: 121 VQIR 125
           VQ R
Sbjct: 121 VQTR 124

[Close]

BLAST of CSPI03G07550 vs. NCBI nr
Match: gi|700201253|gb|KGN56386.1| (hypothetical protein Csa_3G118220 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 7.2e-14
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 1


Query: 14  EAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQL 73
           + G  +E  MK E   KK+    +  K     + +V+  ++G  + GWW  +FH + +Q 
Sbjct: 2   QVGIEIEDVMKGEGEQKKQKN--RKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQ 61

Query: 74  WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 116
           WMVPFSLVLMIAPIFV++S+ IS+FCNSMD+  +S   S DH
Sbjct: 62  WMVPFSLVLMIAPIFVLISVSISSFCNSMDR-ISSLVSSLDH 100

[Close]

BLAST of CSPI03G07550 vs. NCBI nr
Match: gi|296088994|emb|CBI38697.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 1


Query: 16  GFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQLWM 75
           GF +  +  +E+++    G  K  K    ++      L GGL   WW F++HPTN QLWM
Sbjct: 34  GFVLMGSCDQEEKEVDYEGTQKLAKTFVALLWSFFISLGGGLTLVWWEFEYHPTNSQLWM 93

Query: 76  VPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 116
           VPF L++++ P+ V  S+ +S  CNS     +++   S H
Sbjct: 94  VPFGLIMLVTPVIVCFSVFVSDICNSSSGQLSASLDDSVH 133

[Close]

BLAST of CSPI03G07550 vs. NCBI nr
Match: gi|731420734|ref|XP_010661486.1| (PREDICTED: uncharacterized protein LOC104881851 [Vitis vinifera])

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 1


Query: 16  GFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQLWM 75
           GF +  +  +E+++    G  K  K    ++      L GGL   WW F++HPTN QLWM
Sbjct: 19  GFVLMGSCDQEEKEVDYEGTQKLAKTFVALLWSFFISLGGGLTLVWWEFEYHPTNSQLWM 78

Query: 76  VPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 116
           VPF L++++ P+ V  S+ +S  CNS     +++   S H
Sbjct: 79  VPFGLIMLVTPVIVCFSVFVSDICNSSSGQLSASLDDSVH 118

[Close]

BLAST of CSPI03G07550 vs. NCBI nr
Match: gi|1012347936|gb|KYP59127.1| (hypothetical protein KK1_014556 [Cajanus cajan])

HSP 1 Score: 72.4 bits (176), Expect = 6.3e-10
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1


Query: 29  DKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQLWMVPFSLVLMIAPIF 88
           D K N  +         IS ++  + GG + GWW++++HPTNRQLWMVPF L+L + P+ 
Sbjct: 13  DYKENQGITKPSYMMMFISSLLISIVGGSLLGWWLYKYHPTNRQLWMVPFGLILFLTPVI 72

Query: 89  VMMSLLISAFCNSMDQ 105
           V +SL+IS  C S ++
Sbjct: 73  VWLSLIISDLCISTNK 88

The following BLAST results are available for this feature:

BLAST of CSPI03G07550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G07550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5S1_CUCSA	4.5e-63	98.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118200 PE=4 SV=1	[more]
A0A0A0L8F5_CUCSA	5.0e-14	44.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118220 PE=4 SV=1	[more]
F6I2X1_VITVI	2.0e-10	34.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02750 PE=4 SV=...	[more]
A0A151SWF1_CAJCA	4.4e-10	42.11	Uncharacterized protein OS=Cajanus cajan GN=KK1_014556 PE=4 SV=1	[more]
A0A0B2Q2T6_GLYSO	7.5e-10	39.53	Uncharacterized protein OS=Glycine soja GN=glysoja_013112 PE=4 SV=1	[more]

BLAST of CSPI03G07550 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G07550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201251\|gb\|KGN56384.1\|	6.4e-63	98.39	hypothetical protein Csa_3G118200 [Cucumis sativus]	[more]
gi\|700201253\|gb\|KGN56386.1\|	7.2e-14	44.12	hypothetical protein Csa_3G118220 [Cucumis sativus]	[more]
gi\|296088994\|emb\|CBI38697.3\|	2.8e-10	34.00	unnamed protein product [Vitis vinifera]	[more]
gi\|731420734\|ref\|XP_010661486.1\|	2.8e-10	34.00	PREDICTED: uncharacterized protein LOC104881851 [Vitis vinifera]	[more]
gi\|1012347936\|gb\|KYP59127.1\|	6.3e-10	42.11	hypothetical protein KK1_014556 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G07550.1	CSPI03G07550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35165	FAMILY NOT NAMED	coord: 16..104 score: 8.8
None	No IPR available	PANTHER	PTHR35165:SF1	SUBFAMILY NOT NAMED	coord: 16..104 score: 8.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G07550	Csa3G118200	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G07550	MELO3C005988	Melon (DHL92) v3.5.1	cpimeB230
CSPI03G07550	ClCG05G000500	Watermelon (Charleston Gray)	cpiwcgB226
CSPI03G07550	Lsi05G021690	Bottle gourd (USVL1VR-Ls)	cpilsiB207
CSPI03G07550	MELO3C005988.2	Melon (DHL92) v3.6.1	cpimedB224
CSPI03G07550	CsaV3_3G007690	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G07550	Cla97C05G080500	Watermelon (97103) v2	cpiwmbB209
CSPI03G07550	Bhi01G000400	Wax gourd	cpiwgoB284
CSPI03G07550	Cucsa.259600	Cucumber (Gy14) v1	cgycpiB383
CSPI03G07550	CmaCh06G009930	Cucurbita maxima (Rimu)	cmacpiB843
CSPI03G07550	CmaCh14G021350	Cucurbita maxima (Rimu)	cmacpiB255
CSPI03G07550	CmoCh14G022000	Cucurbita moschata (Rifu)	cmocpiB243
CSPI03G07550	Cp4.1LG03g15900	Cucurbita pepo (Zucchini)	cpecpiB611
CSPI03G07550	CsGy3G007670	Cucumber (Gy14) v2	cgybcpiB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G07550	Cucurbita maxima (Rimu)	cmacpiB830
CSPI03G07550	Cucurbita moschata (Rifu)	cmocpiB814
CSPI03G07550	Watermelon (97103) v1	cpiwmB231
CSPI03G07550	Cucurbita pepo (Zucchini)	cpecpiB864
CSPI03G07550	Silver-seed gourd	carcpiB1031