CsGy3G007670 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G007670
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 6593947 .. 6596028 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAACCTACATCACACCAACATGGTACTCATTTCGACACTTTGGCGTTTAAGTTAATACTCTTTATCCTTAGAGATGACGGTGAGAAACTATTTATAAGAGTCTCTTGTTTGTTTGAGACATATGTAAGATAGCACCGATCTTTGAGGTTAAAGACTTTGATTGAGTTCACCTCCAATATTATCCCTTTGAGCTCGAACGAGAAGATCTAACACTAAGAGATTTTAACTTTCTGTTAGACGATGTCTCAAGGCATGTGAGTGGCTCAAGTCTTATTGTCTCGAAAATCCCACAGCAAACAAAGGTTTGAACCTTTCACCTCATGGTGAGAAGTACATGGCTTATGCCAATTTATCACATATGTTCATATTTTGAATACGTTATTGGTTTTTATGTTTACCTATGTGGTTTTGTAAAGATTCAATTATCCTTTCTATATGGCTTTTTCAGGAATATTTTGATCATTTTAAAATATAGGATTTCAACTATTTGCACATTGTTTTGAAAGGTGAGACCAAAATAAATTTCACGTACTCAAAAGTAAAATTTAAACCTTATATGGGATGATATTGTAATGGTGTTTTGTTTTATATTTTTGTTGTTTCAATAAATTTAAAACTAACTTCATTGAAAAAGTAAACACTTGGTCAACTAAAAGAGAGATTTCAAAAATAACCAAACCATGCTCAGAGTGTTGGAGGAAAAAAAATCCTTAGTATGATATTTGTGTGTATATATAAAGTGTAGTATATCATTATGATACAAAATTTCTCTACAAGAAGTTGAAGTGTTAAATTGCAAATTATTTAATCACAGACTGAACAGTTGTGCCTTTTAGAAATAGGTCAACTTACACTTAAAGATTCAATAGTCCCTAAACTCTTAGGTTCTAAAACTGTAATATTTTCAAACTATATATAGATTCTAAATTCATGGGTTTCAGTTAAACAAATTTGAAAAAACTTTAAAAAAATTAGAGACCAAAGATGCATAAACCTCCCTTTATAACTTAAAGGAACAAAAAAGCTATGGTCTAAGAATTTAAATCAATTTGTTGCAAGTATAAAAAAGGAAAATGGAAGCTGACTTTTTGTTTTGTTTGTTTATAATATTTAGGAAGAAACGTTCAGTGGAGTAGCTAATTCAGTTGGGTCCTTTCCATAATTTGGACCCAAGAAAGTTTATTCTATTAAATGTAAAACCTGAACCAGACCTCAACTCCCCAAAACTCACATATTCAATTGGATTTGCATCTCAAACTAGAAAAACGCTGTTTCCAGATACCAATGCTTCAAATGGAAGCAGTTCACCTATAAGTATAACTTCACAGTGTATATCCTAATTTTTCCATAATTTGAGTCCAAGATGAACTTAAATTTCAAGGAGAGAGATGTTTATTTGAAACAATTAGAAGGGCTTAAGCTATTGGTGCTTCTGAGTCTATGTCACATATTTTATCATAAAAGGCAATAAAAATCTAACCCCAGATAGCTACGTCAATTGCTGATGCTAATTTCAAACTTTGATGAAATCCTACGCTTTGTATCTTGTCTACAATCACTTGCCAAATAAAATCCTTCTGTCCCTATACAGCCATCTCTCTCTCTCTCCCTCCCTCCCACTTTCTCTGTTTTTTCTTTTCTTTCTTTTTGGTTCAGCCATTTCTAGTTCTTCTGAAGAGCTTATTAGTTGAGTTTGTAGTAATGGATCAAACATGGAGATTTGCAAGGGGTGGAGATGAAGAAGCTGGATTTCCAATGGAGTCAGCAATGAAAGAAGAAGATAGAGATAAGAAGAGGAATGGGAATATGAAGAGTTGTAAGATAGCAACTTGGGTGATTTCAATGGTAGTGGCATGCCTGACGGGAGGACTTGTATTTGGTTGGTGGGTGTTTCAGTTTCATCCAACAAATAGACAACTATGGATGGTACCTTTTAGTCTTGTTTTGATGATTGCACCCATATTTGTTATGATGTCTCTTCTTATCTCTGCTTTCTGCAATTCCATGGATCAAACTACTACTTCTGCAGCTCCATCCTCAGACCATGTCATCCAACAATCTGTTCAAATTCGATGA

mRNA sequence

ATGGGTCAACCTACATCACACCAACATGGTACTCATTTCGACACTTTGGCGTTTAAGTTAATACTCTTTATCCTTAGAGATGACGACGATGTCTCAAGGCATGTGAGTGGCTCAAGTCTTATTGTCTCGAAAATCCCACAGCAAACAAAGCCATTTCTAGTTCTTCTGAAGAGCTTATTAGTTGAGTTTGTAGTAATGGATCAAACATGGAGATTTGCAAGGGGTGGAGATGAAGAAGCTGGATTTCCAATGGAGTCAGCAATGAAAGAAGAAGATAGAGATAAGAAGAGGAATGGGAATATGAAGAGTTGTAAGATAGCAACTTGGGTGATTTCAATGGTAGTGGCATGCCTGACGGGAGGACTTGTATTTGGTTGGTGGGTGTTTCAGTTTCATCCAACAAATAGACAACTATGGATGGTACCTTTTAGTCTTGTTTTGATGATTGCACCCATATTTGTTATGATGTCTCTTCTTATCTCTGCTTTCTGCAATTCCATGGATCAAACTACTACTTCTGCAGCTCCATCCTCAGACCATGTCATCCAACAATCTGTTCAAATTCGATGA

Coding sequence (CDS)

ATGGGTCAACCTACATCACACCAACATGGTACTCATTTCGACACTTTGGCGTTTAAGTTAATACTCTTTATCCTTAGAGATGACGACGATGTCTCAAGGCATGTGAGTGGCTCAAGTCTTATTGTCTCGAAAATCCCACAGCAAACAAAGCCATTTCTAGTTCTTCTGAAGAGCTTATTAGTTGAGTTTGTAGTAATGGATCAAACATGGAGATTTGCAAGGGGTGGAGATGAAGAAGCTGGATTTCCAATGGAGTCAGCAATGAAAGAAGAAGATAGAGATAAGAAGAGGAATGGGAATATGAAGAGTTGTAAGATAGCAACTTGGGTGATTTCAATGGTAGTGGCATGCCTGACGGGAGGACTTGTATTTGGTTGGTGGGTGTTTCAGTTTCATCCAACAAATAGACAACTATGGATGGTACCTTTTAGTCTTGTTTTGATGATTGCACCCATATTTGTTATGATGTCTCTTCTTATCTCTGCTTTCTGCAATTCCATGGATCAAACTACTACTTCTGCAGCTCCATCCTCAGACCATGTCATCCAACAATCTGTTCAAATTCGATGA

Protein sequence

MGQPTSHQHGTHFDTLAFKLILFILRDDDDVSRHVSGSSLIVSKIPQQTKPFLVLLKSLLVEFVVMDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQSVQIR

Homology

[Close]

BLAST of CsGy3G007670 vs. NCBI nr
Match: KGN56384.1 (hypothetical protein Csa_3G118200 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 8.5e-63
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 66  MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 125
           MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG
Sbjct: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60

Query: 126 WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS 185
           WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS
Sbjct: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS 120

Query: 186 VQIR 190
           VQ R
Sbjct: 121 VQTR 124

[Close]

BLAST of CsGy3G007670 vs. NCBI nr
Match: KGN56386.1 (hypothetical protein Csa_3G118220 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 2.8e-13
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 79  EAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQL 138
           + G  +E  MK E   KK+    +  K     + +V+  ++G  + GWW  +FH + +Q 
Sbjct: 2   QVGIEIEDVMKGEGEQKKQKN--RKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQ 61

Query: 139 WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 181
           WMVPFSLVLMIAPIFV++S+ IS+FCNSMD+  +S   S DH
Sbjct: 62  WMVPFSLVLMIAPIFVLISVSISSFCNSMDR-ISSLVSSLDH 100

[Close]

BLAST of CsGy3G007670 vs. NCBI nr
Match: POE75067.1 (hypothetical protein CFP56_15856 [Quercus suber])

HSP 1 Score: 74.7 bits (182), Expect = 3.7e-10
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 91  EDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQLWMVPFSLVLMIA 150
           E+   +R   +K+C + +W  S++V+ + GGL  GWW +++H TN QLWMVPF LVL+I 
Sbjct: 9   EESHGERRERVKTCIVYSW--SLMVS-MIGGLTMGWWEYEYHSTNSQLWMVPFGLVLLIT 68

Query: 151 PIFVMMSLLISAFCNSMDQTTTSAAPS 178
           P+F   S+ +S  C+S  +   SAA S
Sbjct: 69  PLFAWFSIFVSDLCSSKVEDAPSAATS 92

[Close]

BLAST of CsGy3G007670 vs. NCBI nr
Match: CBI38697.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 81  GFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQLWM 140
           GF +  +  +E+++    G  K  K    ++      L GGL   WW F++HPTN QLWM
Sbjct: 34  GFVLMGSCDQEEKEVDYEGTQKLAKTFVALLWSFFISLGGGLTLVWWEFEYHPTNSQLWM 93

Query: 141 VPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 181
           VPF L++++ P+ V  S+ +S  CNS     +++   S H
Sbjct: 94  VPFGLIMLVTPVIVCFSVFVSDICNSSSGQLSASLDDSVH 133

[Close]

BLAST of CsGy3G007670 vs. NCBI nr
Match: KYP59127.1 (hypothetical protein KK1_014556 [Cajanus cajan])

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 94  DKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQLWMVPFSLVLMIAPIF 153
           D K N  +         IS ++  + GG + GWW++++HPTNRQLWMVPF L+L + P+ 
Sbjct: 13  DYKENQGITKPSYMMMFISSLLISIVGGSLLGWWLYKYHPTNRQLWMVPFGLILFLTPVI 72

Query: 154 VMMSLLISAFCNSMDQ 170
           V +SL+IS  C S ++
Sbjct: 73  VWLSLIISDLCISTNK 88

[Close]

BLAST of CsGy3G007670 vs. TrEMBL
Match: tr|A0A0A0L5S1|A0A0A0L5S1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 5.6e-63
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 66  MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 125
           MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG
Sbjct: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60

Query: 126 WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS 185
           WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS
Sbjct: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS 120

Query: 186 VQIR 190
           VQ R
Sbjct: 121 VQTR 124

[Close]

BLAST of CsGy3G007670 vs. TrEMBL
Match: tr|A0A0A0L8F5|A0A0A0L8F5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.8e-13
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 79  EAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQL 138
           + G  +E  MK E   KK+    +  K     + +V+  ++G  + GWW  +FH + +Q 
Sbjct: 2   QVGIEIEDVMKGEGEQKKQKN--RKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQ 61

Query: 139 WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 181
           WMVPFSLVLMIAPIFV++S+ IS+FCNSMD+  +S   S DH
Sbjct: 62  WMVPFSLVLMIAPIFVLISVSISSFCNSMDR-ISSLVSSLDH 100

[Close]

BLAST of CsGy3G007670 vs. TrEMBL
Match: tr|A0A2N9FJR8|A0A2N9FJR8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18938 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.9e-11
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 91  EDRDKKRNGNMKSCKIATW--VISMVVACLTGGLVFGWWVFQFHPTNRQLWMVPFSLVLM 150
           ++  K++   +K+C + +W  ++SM+     GGL F WW F++HPTN QLWMVPFSL+L+
Sbjct: 9   DESHKEQKERVKTCIVYSWSFMVSMI-----GGLAFTWWEFEYHPTNTQLWMVPFSLILL 68

Query: 151 IAPIFVMMSLLISAFCNS-MDQTTTSAAP 177
           + P+FV  S+ +S  C+S MD    ++ P
Sbjct: 69  VTPLFVWFSIFVSDLCSSKMDDVPKASQP 92

[Close]

BLAST of CsGy3G007670 vs. TrEMBL
Match: tr|A0A2P4J2R0|A0A2P4J2R0_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_15856 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.5e-10
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 91  EDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQLWMVPFSLVLMIA 150
           E+   +R   +K+C + +W  S++V+ + GGL  GWW +++H TN QLWMVPF LVL+I 
Sbjct: 9   EESHGERRERVKTCIVYSW--SLMVS-MIGGLTMGWWEYEYHSTNSQLWMVPFGLVLLIT 68

Query: 151 PIFVMMSLLISAFCNSMDQTTTSAAPS 178
           P+F   S+ +S  C+S  +   SAA S
Sbjct: 69  PLFAWFSIFVSDLCSSKVEDAPSAATS 92

[Close]

BLAST of CsGy3G007670 vs. TrEMBL
Match: tr|F6I2X1|F6I2X1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0048g02750 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.4e-10
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 81  GFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQLWM 140
           GF +  +  +E+++    G  K  K    ++      L GGL   WW F++HPTN QLWM
Sbjct: 19  GFVLMGSCDQEEKEVDYEGTQKLAKTFVALLWSFFISLGGGLTLVWWEFEYHPTNSQLWM 78

Query: 141 VPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 181
           VPF L++++ P+ V  S+ +S  CNS     +++   S H
Sbjct: 79  VPFGLIMLVTPVIVCFSVFVSDICNSSSGQLSASLDDSVH 118

The following BLAST results are available for this feature:

BLAST of CsGy3G007670 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56384.1	8.5e-63	99.19	hypothetical protein Csa_3G118200 [Cucumis sativus]	[more]
KGN56386.1	2.8e-13	44.12	hypothetical protein Csa_3G118220 [Cucumis sativus]	[more]
POE75067.1	3.7e-10	42.53	hypothetical protein CFP56_15856 [Quercus suber]	[more]
CBI38697.3	1.4e-09	34.00	unnamed protein product, partial [Vitis vinifera]	[more]
KYP59127.1	1.9e-09	42.11	hypothetical protein KK1_014556 [Cajanus cajan]	[more]

BLAST of CsGy3G007670 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G007670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G007670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5S1\|A0A0A0L5S1_CUCSA	5.6e-63	99.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1	[more]
tr\|A0A0A0L8F5\|A0A0A0L8F5_CUCSA	1.8e-13	44.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1	[more]
tr\|A0A2N9FJR8\|A0A2N9FJR8_FAGSY	2.9e-11	41.57	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18938 PE=4 SV=1	[more]
tr\|A0A2P4J2R0\|A0A2P4J2R0_QUESU	2.5e-10	42.53	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_15856 PE=4 SV=1	[more]
tr\|F6I2X1\|F6I2X1_VITVI	9.4e-10	34.00	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0048g02750 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032238	ATP-synth_Z

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G007670.1	CsGy3G007670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032238	Putative ATP-synthase-associated protein	PFAM	PF16594	ATP-synt_Z	coord: 111..161 e-value: 2.7E-16 score: 58.7
None	No IPR available	PANTHER	PTHR35165:SF1	SUBFAMILY NOT NAMED	coord: 89..174
None	No IPR available	PANTHER	PTHR35165	FAMILY NOT NAMED	coord: 89..174

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G007670	Csa3G118200	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G007670	MELO3C005988	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G007670	ClCG05G000500	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G007670	CSPI03G07550	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G007670	CmaCh14G021350	Cucurbita maxima (Rimu)	cgybcmaB318
CsGy3G007670	CmaCh06G009930	Cucurbita maxima (Rimu)	cgybcmaB443
CsGy3G007670	CmoCh06G010120	Cucurbita moschata (Rifu)	cgybcmoB401
CsGy3G007670	CmoCh14G022010	Cucurbita moschata (Rifu)	cgybcmoB290
CsGy3G007670	Lsi05G021710	Bottle gourd (USVL1VR-Ls)	cgyblsiB196
CsGy3G007670	MELO3C005988.2	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G007670	Cla97C05G080500	Watermelon (97103) v2	cgybwmbB196
CsGy3G007670	Bhi01G000400	Wax gourd	cgybwgoB272

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G007670	Cucurbita maxima (Rimu)	cgybcmaB430
CsGy3G007670	Cucurbita moschata (Rifu)	cgybcmoB430
CsGy3G007670	Cucurbita pepo (Zucchini)	cgybcpeB406
CsGy3G007670	Cucurbita pepo (Zucchini)	cgybcpeB454
CsGy3G007670	Watermelon (97103) v1	cgybwmB217
CsGy3G007670	Silver-seed gourd	carcgybB0980
CsGy3G007670	Cucumber (Chinese Long) v3	cgybcucB117