MELO3C005988 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C005988
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionZinc finger (CCCH-type/C3HC4-type RING finger) family protein
Locationchr6 : 406712 .. 407086 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAAACATGGAGATTTGCGAGGGGTGGAGATGAAGAAGCAGGATTTCAAATGGAGTCAGCAATGAAAGAAGAAGATAGAGATAAGAAGAGGAATGGGAATATGAAGAGTTGTAAGATAGCCACTTGGGTGATTTCAATGGTAGTGGCATGCCTGATGGGAGGGCTTGTTTTTGGTTGGTGGGTGTTTCAGTTTCATCCAACAAATAGACAACTATGGATGGTACCTTTCAGTCTTGTTTTGATGATTGCACCCATATTTGTTATGATGTCTCTTCTTATCTCTGCTTTCTGCAATTCCATGAATCAAACTGCTACTTCTGCAGCGCCATCCTCCGACCATGTCATCCAACAATCTGTTCAAATTCGATGA

mRNA sequence

ATGGATCAAACATGGAGATTTGCGAGGGGTGGAGATGAAGAAGCAGGATTTCAAATGGAGTCAGCAATGAAAGAAGAAGATAGAGATAAGAAGAGGAATGGGAATATGAAGAGTTGTAAGATAGCCACTTGGGTGATTTCAATGGTAGTGGCATGCCTGATGGGAGGGCTTGTTTTTGCGCCATCCTCCGACCATGTCATCCAACAATCTGTTCAAATTCGATGA

Coding sequence (CDS)

ATGGATCAAACATGGAGATTTGCGAGGGGTGGAGATGAAGAAGCAGGATTTCAAATGGAGTCAGCAATGAAAGAAGAAGATAGAGATAAGAAGAGGAATGGGAATATGAAGAGTTGTAAGATAGCCACTTGGGTGATTTCAATGGTAGTGGCATGCCTGATGGGAGGGCTTGTTTTTGCGCCATCCTCCGACCATGTCATCCAACAATCTGTTCAAATTCGATGA

Protein sequence

MDQTWRFARGGDEEAGFQMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLMGGLVFAPSSDHVIQQSVQIR*
Homology
[Close]
BLAST of MELO3C005988 vs. TrEMBL
Match: A0A0A0L5S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118200 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-25
Identity = 71/124 (57.26%), Postives = 71/124 (57.26%), Query Frame = 1 

Query: 1   MDQTWRFARGGDEEAGFQMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLMGGLVF- 60
           MDQTWRFARGGDEEAGF MESAMKEEDRDKKRNGNMKSCKIATWVISMVVACL GGLVF 
Sbjct: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60

Query: 61  -------------------------------------------------APSSDHVIQQS 75
                                                            APSSDHVIQQS
Sbjct: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS 120

[Close]
BLAST of MELO3C005988 vs. NCBI nr
Match: gi|700201251|gb|KGN56384.1| (hypothetical protein Csa_3G118200 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-25
Identity = 71/124 (57.26%), Postives = 71/124 (57.26%), Query Frame = 1 

Query: 1   MDQTWRFARGGDEEAGFQMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLMGGLVF- 60
           MDQTWRFARGGDEEAGF MESAMKEEDRDKKRNGNMKSCKIATWVISMVVACL GGLVF 
Sbjct: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60

Query: 61  -------------------------------------------------APSSDHVIQQS 75
                                                            APSSDHVIQQS
Sbjct: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS 120

The following BLAST results are available for this feature:
BLAST of MELO3C005988 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5S1_CUCSA1.0e-2557.26Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118200 PE=4 SV=1[more]
BLAST of MELO3C005988 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201251|gb|KGN56384.1|1.4e-2557.26hypothetical protein Csa_3G118200 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005988T1MELO3C005988T1mRNA