CmoCh14G022000 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G022000
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr14 : 15685470 .. 15686105 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAGAAGGGGGAGTAGTCAGGTGGGTATGTCATCAAAGGCTATAAATCAATCAAACTCTACCCCAGATACAAGCTACGCCAAGTACTCATCCCTCCCAACAAGTGCCAATCCTTCTCTTTCATCCATATTTATAATCCTTTAATTGACAAAACCAACTTTGATAAGCTACGCGTGACGTTATACTCAATGCGACTCTCTTATTTTGCTACCAAATGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGATATCTTCAATTACAACACAGGTCTTTCCTATTAAAGCTACCAAATAAGATTGCAGGTGGGAACAGAAACTGAAGGTGTGATGAAGGGGGAGGGAGAGCAGAAGAGGCAGAAGAATAGAGGGCTTAAATCTGTGTGGGCATGTCTGGTTTTAGTTTTGGTGAGTGTGTCGGGGGGGGTTTTGATGGGTTGGTGGGCGGTTCGGTTCCATAGATCACAGAAGCAACAGTGGATGGTACCTTTTAGCCTTGTTCTGATGATTGCTCCCATCTTCGTTTTGATCTCTGTTTCCATCTCCAGTTTCTGCACTTCCATGGACACAACTTCTTCTTCTTTAGTTTCATCCTTGGATCACGACGGACCACCTGAAATTAGATGA

mRNA sequence

ATGAAGAAGAGAAGGGGGAGTAGTCAGGTGGGCTATAAATCAATCAAACTCTACCCCAGATACAAGCTACGCCAAGTACTCATCCCTCCCAACAAGTGCCAATCCTTCTCTTTCATCCATATTTATAATCCTTTAATTGACAAAACCAACTTTGATAAGCTACGCGTGGGAACAGAAACTGAAGGTGTGATGAAGGGGGAGGGAGAGCAGAAGAGGCAGAAGAATAGAGGGCTTAAATCTGTGTGGGCATGTCTGGTTTTAGTTTTGGTGAGTGTGTCGGGGGGGGTTTTGATGGGTTGGTGGGCGGTTCGGTTCCATAGATCACAGAAGCAACAGTGGATGGTACCTTTTAGCCTTGTTCTGATGATTGCTCCCATCTTCGTTTTGATCTCTGTTTCCATCTCCAGTTTCTGCACTTCCATGGACACAACTTCTTCTTCTTTAGTTTCATCCTTGGATCACGACGGACCACCTGAAATTAGATGA

Coding sequence (CDS)

ATGAAGAAGAGAAGGGGGAGTAGTCAGGTGGGCTATAAATCAATCAAACTCTACCCCAGATACAAGCTACGCCAAGTACTCATCCCTCCCAACAAGTGCCAATCCTTCTCTTTCATCCATATTTATAATCCTTTAATTGACAAAACCAACTTTGATAAGCTACGCGTGGGAACAGAAACTGAAGGTGTGATGAAGGGGGAGGGAGAGCAGAAGAGGCAGAAGAATAGAGGGCTTAAATCTGTGTGGGCATGTCTGGTTTTAGTTTTGGTGAGTGTGTCGGGGGGGGTTTTGATGGGTTGGTGGGCGGTTCGGTTCCATAGATCACAGAAGCAACAGTGGATGGTACCTTTTAGCCTTGTTCTGATGATTGCTCCCATCTTCGTTTTGATCTCTGTTTCCATCTCCAGTTTCTGCACTTCCATGGACACAACTTCTTCTTCTTTAGTTTCATCCTTGGATCACGACGGACCACCTGAAATTAGATGA

Homology

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BLAST of CmoCh14G022000 vs. TrEMBL
Match: A0A0A0L8F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118220 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.2e-41
Identity = 91/108 (84.26%), Postives = 96/108 (88.89%), Query Frame = 1


Query: 54  LRVGTETEGVMKGEGEQKRQKNRGLKSVWACLVLVLVSVSGGVLMGWWAVRFHRSQKQQW 113
           ++VG E E VMKGEGEQK+QKNR LK+VW C+VLVLVSVSG  LMGWWAVRFHRSQKQQW
Sbjct: 1   MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 114 MVPFSLVLMIAPIFVLISVSISSFCTSMDTTSSSLVSSLDHDGPPEIR 162
           MVPFSLVLMIAPIFVLISVSISSFC SMD   SSLVSSLDHD PPEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRI-SSLVSSLDHDRPPEIR 107

[Close]

BLAST of CmoCh14G022000 vs. TrEMBL
Match: A0A0A0L5S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118200 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.8e-15
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1


Query: 57  GTETEGVMKGEGEQKRQKNRGLKS----VWACLVLVLVSVSGGVLMGWWAVRFHRSQKQQ 116
           G   E  MK E   K+ +N  +KS     W  + +V+  ++GG++ GWW  +FH + +Q 
Sbjct: 16  GFPMESAMKEEDRDKK-RNGNMKSCKIATWV-ISMVVACLTGGLVFGWWVFQFHPTNRQL 75

Query: 117 WMVPFSLVLMIAPIFVLISVSISSFCTSMDTTSSSLVSSLDH 155
           WMVPFSLVLMIAPIFV++S+ IS+FC SMD T++S   S DH
Sbjct: 76  WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 115

[Close]

BLAST of CmoCh14G022000 vs. TrEMBL
Match: A0A0A0L313_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118210 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.7e-11
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1


Query: 3  KRRGSSQVGY---------KSIKLYPRYKLRQVLIPPNKCQS--FSFIHIYNPLIDKTNF 57
          K+ GSSQVG          KSIKLYPRYKLRQ+L+P NKCQS  F F++IY PLIDKTN 
Sbjct: 2  KKGGSSQVGAVAHNVIKGNKSIKLYPRYKLRQLLMPANKCQSFFFFFVYIYIPLIDKTNL 61

[Close]

BLAST of CmoCh14G022000 vs. TrEMBL
Match: M5XS79_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017413mg PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 73  QKNRGLKSVWACLVLVLVSVSGGVLMGWWAVRFHRSQKQQWMVPFSLVLMIAPIFVLISV 132
           +  R +K+  AC   +LVSV+GG+++GWW  ++H + +Q WMVPF L+L   P+ V  SV
Sbjct: 14  EHERVVKTRKACFWSILVSVAGGLMLGWWEYQYHPTNRQLWMVPFGLILFATPVIVWFSV 73

Query: 133 SISSFCTSMDTTSSSLVSSLDHDGP 158
             S  C   D    + VS L +  P
Sbjct: 74  MASDICNLKDDDHVTRVSQLSNSVP 98

[Close]

BLAST of CmoCh14G022000 vs. TrEMBL
Match: A0A0S3SZ34_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G178600 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 1


Query: 66  GEGEQKRQKNRGLKSVWACLVLV---LVSVSGGVLMGWWAVRFHRSQKQQWMVPFSLVLM 125
           G+ E + ++ +G+K     +V +   L+S+SGG L+GWW  ++H + KQ WMVPF L+L+
Sbjct: 8   GDEEYENKEKQGMKKSHYFMVFISSLLISISGGSLLGWWLHKYHPANKQLWMVPFGLILL 67

Query: 126 IAPIFVLISVSIS 136
             P  V +SV IS
Sbjct: 68  FTPFIVCLSVIIS 80

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BLAST of CmoCh14G022000 vs. NCBI nr
Match: gi|700201253|gb|KGN56386.1| (hypothetical protein Csa_3G118220 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 8.9e-41
Identity = 91/108 (84.26%), Postives = 96/108 (88.89%), Query Frame = 1


Query: 54  LRVGTETEGVMKGEGEQKRQKNRGLKSVWACLVLVLVSVSGGVLMGWWAVRFHRSQKQQW 113
           ++VG E E VMKGEGEQK+QKNR LK+VW C+VLVLVSVSG  LMGWWAVRFHRSQKQQW
Sbjct: 1   MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 114 MVPFSLVLMIAPIFVLISVSISSFCTSMDTTSSSLVSSLDHDGPPEIR 162
           MVPFSLVLMIAPIFVLISVSISSFC SMD   SSLVSSLDHD PPEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRI-SSLVSSLDHDRPPEIR 107

[Close]

BLAST of CmoCh14G022000 vs. NCBI nr
Match: gi|700201251|gb|KGN56384.1| (hypothetical protein Csa_3G118200 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 8.4e-15
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1


Query: 57  GTETEGVMKGEGEQKRQKNRGLKS----VWACLVLVLVSVSGGVLMGWWAVRFHRSQKQQ 116
           G   E  MK E   K+ +N  +KS     W  + +V+  ++GG++ GWW  +FH + +Q 
Sbjct: 16  GFPMESAMKEEDRDKK-RNGNMKSCKIATWV-ISMVVACLTGGLVFGWWVFQFHPTNRQL 75

Query: 117 WMVPFSLVLMIAPIFVLISVSISSFCTSMDTTSSSLVSSLDH 155
           WMVPFSLVLMIAPIFV++S+ IS+FC SMD T++S   S DH
Sbjct: 76  WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 115

[Close]

BLAST of CmoCh14G022000 vs. NCBI nr
Match: gi|700201252|gb|KGN56385.1| (hypothetical protein Csa_3G118210 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 9.6e-11
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1


Query: 3  KRRGSSQVGY---------KSIKLYPRYKLRQVLIPPNKCQS--FSFIHIYNPLIDKTNF 57
          K+ GSSQVG          KSIKLYPRYKLRQ+L+P NKCQS  F F++IY PLIDKTN 
Sbjct: 2  KKGGSSQVGAVAHNVIKGNKSIKLYPRYKLRQLLMPANKCQSFFFFFVYIYIPLIDKTNL 61

[Close]

BLAST of CmoCh14G022000 vs. NCBI nr
Match: gi|596052374|ref|XP_007220681.1| (hypothetical protein PRUPE_ppa017413mg [Prunus persica])

HSP 1 Score: 67.8 bits (164), Expect = 2.0e-08
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 73  QKNRGLKSVWACLVLVLVSVSGGVLMGWWAVRFHRSQKQQWMVPFSLVLMIAPIFVLISV 132
           +  R +K+  AC   +LVSV+GG+++GWW  ++H + +Q WMVPF L+L   P+ V  SV
Sbjct: 14  EHERVVKTRKACFWSILVSVAGGLMLGWWEYQYHPTNRQLWMVPFGLILFATPVIVWFSV 73

Query: 133 SISSFCTSMDTTSSSLVSSLDHDGP 158
             S  C   D    + VS L +  P
Sbjct: 74  MASDICNLKDDDHVTRVSQLSNSVP 98

[Close]

BLAST of CmoCh14G022000 vs. NCBI nr
Match: gi|695074616|ref|XP_009384517.1| (PREDICTED: uncharacterized protein LOC103972050 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-07
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1


Query: 87  LVLVSVSGGVLMGWWAVRFHRSQKQQWMVPFSLVLMIAPIFVLISVSISSFCTSMD 143
           L+LV V GG L+ WWA+ FHRS +Q WMVP  LVL+  P+FV +S+  S  CT ++
Sbjct: 48  LLLVGVCGGALLAWWALSFHRSNEQLWMVPVGLVLLGTPVFVWLSIFASGVCTCLE 103

The following BLAST results are available for this feature:

BLAST of CmoCh14G022000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G022000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8F5_CUCSA	6.2e-41	84.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118220 PE=4 SV=1	[more]
A0A0A0L5S1_CUCSA	5.8e-15	47.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118200 PE=4 SV=1	[more]
A0A0A0L313_CUCSA	6.7e-11	64.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118210 PE=4 SV=1	[more]
M5XS79_PRUPE	1.4e-08	38.82	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017413mg PE=4 SV=1	[more]
A0A0S3SZ34_PHAAN	2.0e-07	41.10	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G178600 PE=...	[more]

BLAST of CmoCh14G022000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh14G022000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201253\|gb\|KGN56386.1\|	8.9e-41	84.26	hypothetical protein Csa_3G118220 [Cucumis sativus]	[more]
gi\|700201251\|gb\|KGN56384.1\|	8.4e-15	47.06	hypothetical protein Csa_3G118200 [Cucumis sativus]	[more]
gi\|700201252\|gb\|KGN56385.1\|	9.6e-11	64.62	hypothetical protein Csa_3G118210 [Cucumis sativus]	[more]
gi\|596052374\|ref\|XP_007220681.1\|	2.0e-08	38.82	hypothetical protein PRUPE_ppa017413mg [Prunus persica]	[more]
gi\|695074616\|ref\|XP_009384517.1\|	1.7e-07	51.79	PREDICTED: uncharacterized protein LOC103972050 [Musa acuminata subsp. malaccens...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G022000.1	CmoCh14G022000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35165	FAMILY NOT NAMED	coord: 45..142 score: 2.3
None	No IPR available	PANTHER	PTHR35165:SF1	SUBFAMILY NOT NAMED	coord: 45..142 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G022000	Cucsa.259600	Cucumber (Gy14) v1	cgycmoB0700
CmoCh14G022000	CmaCh14G021350	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G022000	CmaCh06G009930	Cucurbita maxima (Rimu)	cmacmoB795
CmoCh14G022000	Csa3G118200	Cucumber (Chinese Long) v2	cmocuB239
CmoCh14G022000	ClCG05G000500	Watermelon (Charleston Gray)	cmowcgB219
CmoCh14G022000	CSPI03G07550	Wild cucumber (PI 183967)	cmocpiB243
CmoCh14G022000	Lsi05G021690	Bottle gourd (USVL1VR-Ls)	cmolsiB233
CmoCh14G022000	CsaV3_3G007690	Cucumber (Chinese Long) v3	cmocucB0283
CmoCh14G022000	Cla97C05G080520	Watermelon (97103) v2	cmowmbB243
CmoCh14G022000	Bhi01G000400	Wax gourd	cmowgoB0303
CmoCh14G022000	CsGy3G007680	Cucumber (Gy14) v2	cgybcmoB290

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G022000	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh14G022000	Cucurbita maxima (Rimu)	cmacmoB799
CmoCh14G022000	Melon (DHL92) v3.5.1	cmomeB230
CmoCh14G022000	Watermelon (97103) v1	cmowmB231
CmoCh14G022000	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G022000	Cucurbita pepo (Zucchini)	cmocpeB254
CmoCh14G022000	Melon (DHL92) v3.6.1	cmomedB260
CmoCh14G022000	Silver-seed gourd	carcmoB1330