Cla97C05G080520 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G080520
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Transmembrane protein, putative
Location	Cla97Chr05 : 576647 .. 576970 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTGGGAACAGAAATTGAAGGTGTGATGAAGGGGGAGGGAGAGCAGAAGAAACAGAAGAACAGAAAGCTTAAGGTTGTGTGGGTATGTGTGGTATTAGTTTTGGTGAGTGTGTCAGGGGCGTTTTTAATGGGTTGGTGGGCGGTTCGTTTCCATAGAACACAGAAGCAACAGTGGATGGTACCTTTTGGCCTTGTTTTGATGATTGCTCCCATCTTCGTTTTGATCTCTGTTTTCATCTCCAGTTTCTGCACTTCCATGGACAGAACTTCTTCTTTAGTTTCATCTCTGGATCATGATCGACCACCTGAAATTAGATGA

mRNA sequence

ATGCAGGTGGGAACAGAAATTGAAGGTGTGATGAAGGGGGAGGGAGAGCAGAAGAAACAGAAGAACAGAAAGCTTAAGGTTGTGTGGGTATGTGTGGTATTAGTTTTGGTGAGTGTGTCAGGGGCGTTTTTAATGGGTTGGTGGGCGGTTCGTTTCCATAGAACACAGAAGCAACAGTGGATGGTACCTTTTGGCCTTGTTTTGATGATTGCTCCCATCTTCGTTTTGATCTCTGTTTTCATCTCCAGTTTCTGCACTTCCATGGACAGAACTTCTTCTTTAGTTTCATCTCTGGATCATGATCGACCACCTGAAATTAGATGA

Coding sequence (CDS)

ATGCAGGTGGGAACAGAAATTGAAGGTGTGATGAAGGGGGAGGGAGAGCAGAAGAAACAGAAGAACAGAAAGCTTAAGGTTGTGTGGGTATGTGTGGTATTAGTTTTGGTGAGTGTGTCAGGGGCGTTTTTAATGGGTTGGTGGGCGGTTCGTTTCCATAGAACACAGAAGCAACAGTGGATGGTACCTTTTGGCCTTGTTTTGATGATTGCTCCCATCTTCGTTTTGATCTCTGTTTTCATCTCCAGTTTCTGCACTTCCATGGACAGAACTTCTTCTTTAGTTTCATCTCTGGATCATGATCGACCACCTGAAATTAGATGA

Protein sequence

MQVGTEIEGVMKGEGEQKKQKNRKLKVVWVCVVLVLVSVSGAFLMGWWAVRFHRTQKQQWMVPFGLVLMIAPIFVLISVFISSFCTSMDRTSSLVSSLDHDRPPEIR

Homology

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BLAST of Cla97C05G080520 vs. NCBI nr
Match: KGN56386.1 (hypothetical protein Csa_3G118220 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 5.9e-29
Identity = 73/107 (68.22%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 1   MQVGTEIEGVMKGXXXXXXXXXXXXXXXXXXXXXXXXXXXGAFLMGWWAVRFHRTQKQQW 60
           MQVG EIE VMKG                           GAFLMGWWAVRFHR+QKQQW
Sbjct: 1   MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 61  MVPFGLVLMIAPIFVLISVFISSFCTSMDRTSSLVSSLDHDRPPEIR 108
           MVPF LVLMIAPIFVLISV ISSFC SMDR SSLVSSLDHDRPPEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 107

[Close]

BLAST of Cla97C05G080520 vs. NCBI nr
Match: KGN56384.1 (hypothetical protein Csa_3G118200 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 7.3e-11
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 41  GAFLMGWWAVRFHRTQKQQWMVPFGLVLMIAPIFVLISVFISSFCTSMDR-TSSLVSSLD 100
           G  + GWW  +FH T +Q WMVPF LVLMIAPIFV++S+ IS+FC SMD+ T+S   S D
Sbjct: 55  GGLVFGWWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSD 114

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BLAST of Cla97C05G080520 vs. NCBI nr
Match: POE75067.1 (hypothetical protein CFP56_15856 [Quercus suber])

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-06
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 41 GAFLMGWWAVRFHRTQKQQWMVPFGLVLMIAPIFVLISVFISSFCTS 88
          G   MGWW   +H T  Q WMVPFGLVL+I P+F   S+F+S  C+S
Sbjct: 35 GGLTMGWWEYEYHSTNSQLWMVPFGLVLLITPLFAWFSIFVSDLCSS 81

[Close]

BLAST of Cla97C05G080520 vs. NCBI nr
Match: XP_009384517.1 (PREDICTED: uncharacterized protein LOC103972050 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 60.5 bits (145), Expect = 4.1e-06
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 41  GAFLMGWWAVRFHRTQKQQWMVPFGLVLMIAPIFVLISVFISSFCTSMD 90
           G  L+ WWA+ FHR+ +Q WMVP GLVL+  P+FV +S+F S  CT ++
Sbjct: 55  GGALLAWWALSFHRSNEQLWMVPVGLVLLGTPVFVWLSIFASGVCTCLE 103

[Close]

BLAST of Cla97C05G080520 vs. NCBI nr
Match: CCW28738.1 (putative permease/transmembrane protein [Arachis duranensis])

HSP 1 Score: 59.7 bits (143), Expect = 7.0e-06
Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 0


Query: 41  GAFLMGWWAVRFHRTQKQQWMVPFGLVLMIAPIFVLISVFISSFCTSMDRTSSLVSSLDH 100
           G F++GWW  ++H   KQ WMVPFG VL + PI   + + +  FCT+        SS  H
Sbjct: 33  GGFVLGWWLYKYHPKNKQLWMVPFGFVLFLTPIICCLCLILPDFCTAKTDPVDATSSFHH 92

Query: 101 DRPPEI 107
             P  +
Sbjct: 93  PVPKRL 98

[Close]

BLAST of Cla97C05G080520 vs. TrEMBL
Match: tr|A0A0A0L8F5|A0A0A0L8F5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.9e-29
Identity = 73/107 (68.22%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 1   MQVGTEIEGVMKGXXXXXXXXXXXXXXXXXXXXXXXXXXXGAFLMGWWAVRFHRTQKQQW 60
           MQVG EIE VMKG                           GAFLMGWWAVRFHR+QKQQW
Sbjct: 1   MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 61  MVPFGLVLMIAPIFVLISVFISSFCTSMDRTSSLVSSLDHDRPPEIR 108
           MVPF LVLMIAPIFVLISV ISSFC SMDR SSLVSSLDHDRPPEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 107

[Close]

BLAST of Cla97C05G080520 vs. TrEMBL
Match: tr|A0A0A0L5S1|A0A0A0L5S1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-11
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 41  GAFLMGWWAVRFHRTQKQQWMVPFGLVLMIAPIFVLISVFISSFCTSMDR-TSSLVSSLD 100
           G  + GWW  +FH T +Q WMVPF LVLMIAPIFV++S+ IS+FC SMD+ T+S   S D
Sbjct: 55  GGLVFGWWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSD 114

[Close]

BLAST of Cla97C05G080520 vs. TrEMBL
Match: tr|A0A2P4J2R0|A0A2P4J2R0_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_15856 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.4e-07
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 41 GAFLMGWWAVRFHRTQKQQWMVPFGLVLMIAPIFVLISVFISSFCTS 88
          G   MGWW   +H T  Q WMVPFGLVL+I P+F   S+F+S  C+S
Sbjct: 35 GGLTMGWWEYEYHSTNSQLWMVPFGLVLLITPLFAWFSIFVSDLCSS 81

[Close]

BLAST of Cla97C05G080520 vs. TrEMBL
Match: tr|N1NKB0|N1NKB0_ARADU (Putative permease/transmembrane protein OS=Arachis duranensis OX=130453 GN=ARAX_ADH18B08-009 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.7e-06
Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 0


Query: 41  GAFLMGWWAVRFHRTQKQQWMVPFGLVLMIAPIFVLISVFISSFCTSMDRTSSLVSSLDH 100
           G F++GWW  ++H   KQ WMVPFG VL + PI   + + +  FCT+        SS  H
Sbjct: 33  GGFVLGWWLYKYHPKNKQLWMVPFGFVLFLTPIICCLCLILPDFCTAKTDPVDATSSFHH 92

Query: 101 DRPPEI 107
             P  +
Sbjct: 93  PVPKRL 98

[Close]

BLAST of Cla97C05G080520 vs. TrEMBL
Match: tr|A0A151SWF1|A0A151SWF1_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_014556 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.1e-06
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 41 GAFLMGWWAVRFHRTQKQQWMVPFGLVLMIAPIFVLISVFISSFCTSMDRTSSLV 96
          G  L+GWW  ++H T +Q WMVPFGL+L + P+ V +S+ IS  C S ++   ++
Sbjct: 39 GGSLLGWWLYKYHPTNRQLWMVPFGLILFLTPVIVWLSLIISDLCISTNKEEDVL 93

The following BLAST results are available for this feature:

BLAST of Cla97C05G080520 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56386.1	5.9e-29	68.22	hypothetical protein Csa_3G118220 [Cucumis sativus]	[more]
KGN56384.1	7.3e-11	59.02	hypothetical protein Csa_3G118200 [Cucumis sativus]	[more]
POE75067.1	1.4e-06	53.19	hypothetical protein CFP56_15856 [Quercus suber]	[more]
XP_009384517.1	4.1e-06	51.02	PREDICTED: uncharacterized protein LOC103972050 [Musa acuminata subsp. malaccens...	[more]
CCW28738.1	7.0e-06	37.88	putative permease/transmembrane protein [Arachis duranensis]	[more]

BLAST of Cla97C05G080520 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L8F5\|A0A0A0L8F5_CUCSA	3.9e-29	68.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1	[more]
tr\|A0A0A0L5S1\|A0A0A0L5S1_CUCSA	4.8e-11	59.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1	[more]
tr\|A0A2P4J2R0\|A0A2P4J2R0_QUESU	9.4e-07	53.19	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_15856 PE=4 SV=1	[more]
tr\|N1NKB0\|N1NKB0_ARADU	4.7e-06	37.88	Putative permease/transmembrane protein OS=Arachis duranensis OX=130453 GN=ARAX_...	[more]
tr\|A0A151SWF1\|A0A151SWF1_CAJCA	6.1e-06	41.82	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_014556 PE=4 SV=1	[more]

BLAST of Cla97C05G080520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G080520 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032238	ATP-synth_Z

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G080520.1	Cla97C05G080520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032238	Putative ATP-synthase-associated protein	PFAM	PF16594	ATP-synt_Z	coord: 30..82 e-value: 2.8E-19 score: 68.2
None	No IPR available	PANTHER	PTHR35165	FAMILY NOT NAMED	coord: 13..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G080520	CSPI03G07560	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G080520	CmoCh14G022000	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G080520	Lsi05G021690	Bottle gourd (USVL1VR-Ls)	lsiwmbB333
Cla97C05G080520	CsGy3G007680	Cucumber (Gy14) v2	cgybwmbB196

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G080520	Silver-seed gourd	carwmbB1047
Cla97C05G080520	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G080520	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G080520	Cucurbita maxima (Rimu)	cmawmbB862
Cla97C05G080520	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G080520	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G080520	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G080520	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G080520	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G080520	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G080520	Watermelon (97103) v1	wmwmbB206
Cla97C05G080520	Wax gourd	wgowmbB191