CSPI02G04180 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G04180
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Photosystem II reaction center PsbP family protein
Location	Chr2 : 3012527 .. 3014647 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATTAGGTGGAAAGATTTGAGTCCAAGAAGTTCGTCAAATTCGTGGATAGAAGGGGAGACTAAAAGGATAAATATAAAGAAGTAGCTCTCCAAGTTTCGAATCGAAGTGGAATACTCCAACTCATAGGAAATGGCGTTCAGTTGCTGCTTTTCCGGCAGCCAAATGATTAATCTCCGACGTAACATAATATCAGCACAGTCGTCATCCGACGACCCTGCCGGTAAATCTGCGGCGGAGGAATTCGCACCGCTGGCAGTGACATTTCGGCGGAGGCTAATAGTTGGGATCGGGTCGGCTTCTTTGGTAGCCATCGGCGCAAATTTCGGCGGCGTGACGAGCTTCCTGCTCGGCTTGTCACCGGAAAACAGTCGGCGGTTGAGAGTGGATGTTGTTTATCCAATTGGAGGATACAGTCGGTGCATTGATCCCAATGAAGGATTTGGTTAGTAATTTCTTCTCTTCTCACACATACATAAGTTTTCCTCGGATAATTTGATTTTTTTTTCCTTAAAATTTCTCTCTTGTGAATGGTGACATAAGTATAACTTTACATAAACTAATCTCGATTTAATTACGGTTCAAGAATAATTCTGACCACTATATCTTAAAATTAGTTTAGTACTTTTAAAGTTTTTTTTATTGTTATAATGGATTAGATAATAATAATAATAATAATTTATAGAAAAATGGTCATAAATACAAATTAGACAAAATATTTAAAATATATAACAAAATAAATTCTATTAATAATAAAAATAATACTTTTAAAATTCTATTATGACATTGATTTAGATATTATAGAATCCAAAATTTTACTATAGTTTATAATATTTTAATTTATTTTACTATTTTTAAAAATAGCTATAATTTATATTTTAAAATTATATTCTATTAACATGGTATTTATAGTGAAAGGATGCTTGAAAAAGTGTGAACTAAATTTAAGATTACTGAAAATACCAACCTTAAATTGGAACATTTGAATATATAAATTAAAATTTGAAATTTTGGAAGTATAAAAATTCTAATACTAAAATTTAGGTCCAACCGATTTTTGTAACCGCGCTTTGCTTAATTATCATCGTGCACTGCCTAAATATTTAAAGAACGTCCAGAGTTCATATACCCATCGAGTTGGGTAGGAGACCAGAGATTGCTTTATCGGGCAGCTGAAAAGTCGGAATATGAACGATCACTGGACCCTCCACCCTTGACCGATTCCACCATGGATCGTCGTCGTCGAAATGTTAACGAGCCAGTGGTTGCATTTGGTCCTCCAGGTTCGAGTGGAGAGCTCAATGTTAGCGTCATTGTGTCCCCAGTACCTCTTGATTTTTCGTAAGTTACCAACAAAACTTTATTGCTTCAATATTATGAGAATTTGAAATTCCGCCATCCTTCCACATTATTCTAACCAAAGTTCTTTTTCTCCTTTTCTTTTACTGTTCTTTGGATGAAACAAAGAATTGAAGCATTTGGAGGACCAAATGAAGTCGGGGAAGCTGTGATCAGAACTATCACAAGGGCCAGCAAACGCTCTGATCTTAAAGGAACATTGATACAAACAACTCTAAGAGAGGATTTGCTAACCAAATACTATGAACTAGAATTCAAGGTGGAAAGCACGGCGTTTCGGCGGCACAACATTGCAGTTTGTTGTGCTCGTCGGGGAAAATTATATACACTAAATGCCCAAGCACCTGAATCAGAATGGGCAGGTCTAAAATCAAAGATGAAGACAATTGCCAATTCTTTTTGTCTCTCAGTTTGAAGGCTTTTATGTCCTATTACTATGAGGGTGGGATTTGGGAATTCTTTTTTTCTTTTTTCTTTTTTTGGAGATTACTATAAAATTAAGGAGAATGTAAAACTCAATATCTTGCCATCTATAAAACTATATTGGAGATGTTACAATGTTTCTACATCAGGCTAAATGCCTAAAATATATTTTGTTAATTGGTATGTGCACCAAGATCTCACTATTGCACATATTGGTATGTACAAGTTTTCGGGTCAAGAAGTGAGTTTCAGAAAATATACTATTTTGAATCTATAATACATTGAATATGAAAAAACTAAGCACAACTTATCTGGCTTTGCTTTGTCATATTCTCCAAG

mRNA sequence

ATGGCGTTCAGTTGCTGCTTTTCCGGCAGCCAAATGATTAATCTCCGACGTAACATAATATCAGCACAGTCGTCATCCGACGACCCTGCCGGTAAATCTGCGGCGGAGGAATTCGCACCGCTGGCAGTGACATTTCGGCGGAGGCTAATAGTTGGGATCGGGTCGGCTTCTTTGGTAGCCATCGGCGCAAATTTCGGCGGCGTGACGAGCTTCCTGCTCGGCTTGTCACCGGAAAACAGTCGGCGGTTGAGAGTGGATGTTGTTTATCCAATTGGAGGATACAGTCGGTGCATTGATCCCAATGAAGGATTTGAGTTCATATACCCATCGAGTTGGGTAGGAGACCAGAGATTGCTTTATCGGGCAGCTGAAAAGTCGGAATATGAACGATCACTGGACCCTCCACCCTTGACCGATTCCACCATGGATCGTCGTCGTCGAAATGTTAACGAGCCAGTGGTTGCATTTGGTCCTCCAGGTTCGAGTGGAGAGCTCAATGTTAGCGTCATTGTGTCCCCAGTACCTCTTGATTTTTCAATTGAAGCATTTGGAGGACCAAATGAAGTCGGGGAAGCTGTGATCAGAACTATCACAAGGGCCAGCAAACGCTCTGATCTTAAAGGAACATTGATACAAACAACTCTAAGAGAGGATTTGCTAACCAAATACTATGAACTAGAATTCAAGGTGGAAAGCACGGCGTTTCGGCGGCACAACATTGCAGTTTGTTGTGCTCGTCGGGGAAAATTATATACACTAAATGCCCAAGCACCTGAATCAGAATGGGCAGGTCTAAAATCAAAGATGAAGACAATTGCCAATTCTTTTTGTCTCTCAGTTTGA

Coding sequence (CDS)

ATGGCGTTCAGTTGCTGCTTTTCCGGCAGCCAAATGATTAATCTCCGACGTAACATAATATCAGCACAGTCGTCATCCGACGACCCTGCCGGTAAATCTGCGGCGGAGGAATTCGCACCGCTGGCAGTGACATTTCGGCGGAGGCTAATAGTTGGGATCGGGTCGGCTTCTTTGGTAGCCATCGGCGCAAATTTCGGCGGCGTGACGAGCTTCCTGCTCGGCTTGTCACCGGAAAACAGTCGGCGGTTGAGAGTGGATGTTGTTTATCCAATTGGAGGATACAGTCGGTGCATTGATCCCAATGAAGGATTTGAGTTCATATACCCATCGAGTTGGGTAGGAGACCAGAGATTGCTTTATCGGGCAGCTGAAAAGTCGGAATATGAACGATCACTGGACCCTCCACCCTTGACCGATTCCACCATGGATCGTCGTCGTCGAAATGTTAACGAGCCAGTGGTTGCATTTGGTCCTCCAGGTTCGAGTGGAGAGCTCAATGTTAGCGTCATTGTGTCCCCAGTACCTCTTGATTTTTCAATTGAAGCATTTGGAGGACCAAATGAAGTCGGGGAAGCTGTGATCAGAACTATCACAAGGGCCAGCAAACGCTCTGATCTTAAAGGAACATTGATACAAACAACTCTAAGAGAGGATTTGCTAACCAAATACTATGAACTAGAATTCAAGGTGGAAAGCACGGCGTTTCGGCGGCACAACATTGCAGTTTGTTGTGCTCGTCGGGGAAAATTATATACACTAAATGCCCAAGCACCTGAATCAGAATGGGCAGGTCTAAAATCAAAGATGAAGACAATTGCCAATTCTTTTTGTCTCTCAGTTTGA

Homology

[Close]

BLAST of CSPI02G04180 vs. Swiss-Prot
Match: PPD7_ARATH (PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana GN=PPD7 PE=2 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 4.9e-95
Identity = 177/276 (64.13%), Postives = 216/276 (78.26%), Query Frame = 1


Query: 3   FSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIG 62
           FS  +S    + L   +I+ Q S D     + AEEF+PL   F RRL++G+GS+S++AIG
Sbjct: 7   FSLLYSSPTNVKLSNFLIAQQPSGD--LKTTPAEEFSPLVEKFNRRLLLGVGSSSVLAIG 66

Query: 63  ANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLYRA 122
           ANFGG TSF+LGLSP   R L++DV+YPIGGYSRCID  EGFEFIYP++WVGDQ LLYRA
Sbjct: 67  ANFGGTTSFILGLSPGIGRNLKLDVIYPIGGYSRCIDTVEGFEFIYPATWVGDQTLLYRA 126

Query: 123 AEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEA 182
           AEKSE E SLD PP  +S    RR+NVNEPVVAFGPPGS+GELNVSVIVSPV   FSIEA
Sbjct: 127 AEKSERENSLDLPPARNS----RRKNVNEPVVAFGPPGSTGELNVSVIVSPVSPSFSIEA 186

Query: 183 FGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLRED--LLTKYYELEFKVESTAFRRHNI 242
           FGGP EVGEA++RT+T + +R+DLKGTL+++++R+D     KYYELEFKVES  FRRHN+
Sbjct: 187 FGGPKEVGEAIVRTVTGSGQRADLKGTLLESSIRQDSERNLKYYELEFKVESPLFRRHNV 246

Query: 243 AVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSF 277
           AVCCA  G+LYTLNAQAPES W+ +KS++ T A SF
Sbjct: 247 AVCCAHSGRLYTLNAQAPESAWSEVKSEIYTTAKSF 276

[Close]

BLAST of CSPI02G04180 vs. Swiss-Prot
Match: PPL1_ARATH (PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-07
Identity = 34/114 (29.82%), Postives = 57/114 (50.00%), Query Frame = 1


Query: 168 SVIVSPVPLDF-SIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYEL 227
           SV V+ VP    +I+ FG P ++ E +I+ +     +   K TLI  +  +     YY+ 
Sbjct: 120 SVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQ---KTTLIDASEHDVDGKTYYQF 179

Query: 228 EFKVESTAFRRHNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSV 281
           EF V++  + RH +       G  YTL   A E  W  +K ++ T+ +SF ++V
Sbjct: 180 EFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSFKITV 230

[Close]

BLAST of CSPI02G04180 vs. TrEMBL
Match: A0A0A0LGE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030040 PE=4 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 4.3e-154
Identity = 278/279 (99.64%), Postives = 278/279 (99.64%), Query Frame = 1


Query: 1   MAFSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60
           MAFSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA
Sbjct: 1   MAFSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60

Query: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLY 120
           IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLY
Sbjct: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLY 120

Query: 121 RAAEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSI 180
           RAAEK EYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSI
Sbjct: 121 RAAEKLEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSI 180

Query: 181 EAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRRHNI 240
           EAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRRHNI
Sbjct: 181 EAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRRHNI 240

Query: 241 AVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLS 280
           AVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLS
Sbjct: 241 AVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLS 279

[Close]

BLAST of CSPI02G04180 vs. TrEMBL
Match: V4T5F4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002020mg PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 5.8e-103
Identity = 191/263 (72.62%), Postives = 224/263 (85.17%), Query Frame = 1


Query: 21  SAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENS 80
           S Q  S  P GKS AEEFAPLA  F RRL+VG+G+ASLVA+GANFGGVTSFLLGLSPE+ 
Sbjct: 31  SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESG 90

Query: 81  RRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLYRAAEKSEYERSLDPPPLTDS 140
           R L++DV+YPIGGYSRCID NEGFEFIYP SWVGDQ LLYRAAEKSE+ERSLDPPP+  +
Sbjct: 91  RNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKN 150

Query: 141 --TMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGEAVIRTIT 200
             + + RR+N+NEP+VAFGPPGS+GELNVS IVSPVP DFSIEAFGGP EVGEAV+RTIT
Sbjct: 151 VKSSNGRRQNINEPIVAFGPPGSTGELNVSAIVSPVPPDFSIEAFGGPKEVGEAVVRTIT 210

Query: 201 RASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAFRRHNIAVCCARRGKLYTLNAQ 260
            + +R D+KG+LI++ LRED L   KYYELEF+VES +F+RHNIAVCCAR GKLYTLNAQ
Sbjct: 211 GSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCARNGKLYTLNAQ 270

Query: 261 APESEWAGLKSKMKTIANSFCLS 280
           APES W  +KS++ T+A+SF L+
Sbjct: 271 APESVWPEVKSELYTVADSFSLT 292

[Close]

BLAST of CSPI02G04180 vs. TrEMBL
Match: A0A067EQY2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022699mg PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 5.8e-103
Identity = 191/263 (72.62%), Postives = 224/263 (85.17%), Query Frame = 1


Query: 21  SAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENS 80
           S Q  S  P GKS AEEFAPLA  F RRL+VG+G+ASLVA+GANFGGVTSFLLGLSPE+ 
Sbjct: 31  SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESG 90

Query: 81  RRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLYRAAEKSEYERSLDPPPLTDS 140
           R L++DV+YPIGGYSRCID NEGFEFIYP SWVGDQ LLYRAAEKSE+ERSLDPPP+  +
Sbjct: 91  RNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKN 150

Query: 141 --TMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGEAVIRTIT 200
             + + RR+N+NEP+VAFGPPGS+GELNVSVIVSPVP DFSIEAFGGP EVGEAV+RTIT
Sbjct: 151 VKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTIT 210

Query: 201 RASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAFRRHNIAVCCARRGKLYTLNAQ 260
            + +R D+KG+LI++ LRED L   KYYELEF+VES +F+RHNIAVCC R GKLYTLNAQ
Sbjct: 211 GSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQ 270

Query: 261 APESEWAGLKSKMKTIANSFCLS 280
           APES W  +KS++ T+A+SF L+
Sbjct: 271 APESVWPEVKSELYTVADSFSLT 292

[Close]

BLAST of CSPI02G04180 vs. TrEMBL
Match: W9QGT7_9ROSA (PsbP-like protein 1 OS=Morus notabilis GN=L484_013529 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 8.4e-102
Identity = 193/288 (67.01%), Postives = 231/288 (80.21%), Query Frame = 1


Query: 1   MAFSCCFSGSQMINLRRNIISAQSSSD------DPAGKSAAEEFAPLAVTFRRRLIVGIG 60
           MA + CF   +  +  + I   QSS D      + A + AAE+FAPLA TFRRRL+VG+G
Sbjct: 1   MALARCFHACKAPSFHK-IRMTQSSGDRKERSEEAASQPAAEQFAPLAATFRRRLLVGLG 60

Query: 61  SASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVG 120
           SASLVA+GANF GVTSFLLGLSPE SR L++DVVYPI GY+RCID NEGFEFIYP+ WVG
Sbjct: 61  SASLVAVGANFAGVTSFLLGLSPETSRNLKLDVVYPIDGYNRCIDTNEGFEFIYPARWVG 120

Query: 121 DQRLLYRAAEKSEYERSLDPPPLTDSTMD-RRRRNVNEPVVAFGPPGSSGELNVSVIVSP 180
           DQRLLYRAAEK+E+ERSLDPPPL ++  +  RR NVNEPVVAFGPPG+SGELNVSVIVSP
Sbjct: 121 DQRLLYRAAEKTEFERSLDPPPLKNAKSNGGRRNNVNEPVVAFGPPGTSGELNVSVIVSP 180

Query: 181 VPLDFSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLL--TKYYELEFKVE 240
           VPLDF IEAFGGP EVGEAV+RTIT +SKR ++KGTL+++T+R+D +    YYELEF+V+
Sbjct: 181 VPLDFKIEAFGGPKEVGEAVVRTITGSSKRPEVKGTLVESTMRKDPIRNVNYYELEFRVD 240

Query: 241 STAFRRHNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLS 280
           S  FRRHN+AVCCAR G+L+TLNAQAPES W  +K   + IA SF L+
Sbjct: 241 SPTFRRHNVAVCCARSGRLFTLNAQAPESVWQEVKLDFERIAESFSLT 287

[Close]

BLAST of CSPI02G04180 vs. TrEMBL
Match: V4TAP0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002020mg PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 2.4e-101
Identity = 191/266 (71.80%), Postives = 224/266 (84.21%), Query Frame = 1


Query: 21  SAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENS 80
           S Q  S  P GKS AEEFAPLA  F RRL+VG+G+ASLVA+GANFGGVTSFLLGLSPE+ 
Sbjct: 31  SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESG 90

Query: 81  RRLRVDVVYPIGGYSRCIDPNEGF---EFIYPSSWVGDQRLLYRAAEKSEYERSLDPPPL 140
           R L++DV+YPIGGYSRCID NEGF   EFIYP SWVGDQ LLYRAAEKSE+ERSLDPPP+
Sbjct: 91  RNLKLDVLYPIGGYSRCIDINEGFGHVEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPI 150

Query: 141 TDS--TMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGEAVIR 200
             +  + + RR+N+NEP+VAFGPPGS+GELNVS IVSPVP DFSIEAFGGP EVGEAV+R
Sbjct: 151 NKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSAIVSPVPPDFSIEAFGGPKEVGEAVVR 210

Query: 201 TITRASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAFRRHNIAVCCARRGKLYTL 260
           TIT + +R D+KG+LI++ LRED L   KYYELEF+VES +F+RHNIAVCCAR GKLYTL
Sbjct: 211 TITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCARNGKLYTL 270

Query: 261 NAQAPESEWAGLKSKMKTIANSFCLS 280
           NAQAPES W  +KS++ T+A+SF L+
Sbjct: 271 NAQAPESVWPEVKSELYTVADSFSLT 295

[Close]

BLAST of CSPI02G04180 vs. TAIR10
Match: AT3G05410.2 (AT3G05410.2 Photosystem II reaction center PsbP family protein)

HSP 1 Score: 349.0 bits (894), Expect = 2.8e-96
Identity = 177/276 (64.13%), Postives = 216/276 (78.26%), Query Frame = 1


Query: 3   FSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIG 62
           FS  +S    + L   +I+ Q S D     + AEEF+PL   F RRL++G+GS+S++AIG
Sbjct: 7   FSLLYSSPTNVKLSNFLIAQQPSGD--LKTTPAEEFSPLVEKFNRRLLLGVGSSSVLAIG 66

Query: 63  ANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLYRA 122
           ANFGG TSF+LGLSP   R L++DV+YPIGGYSRCID  EGFEFIYP++WVGDQ LLYRA
Sbjct: 67  ANFGGTTSFILGLSPGIGRNLKLDVIYPIGGYSRCIDTVEGFEFIYPATWVGDQTLLYRA 126

Query: 123 AEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEA 182
           AEKSE E SLD PP  +S    RR+NVNEPVVAFGPPGS+GELNVSVIVSPV   FSIEA
Sbjct: 127 AEKSERENSLDLPPARNS----RRKNVNEPVVAFGPPGSTGELNVSVIVSPVSPSFSIEA 186

Query: 183 FGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLRED--LLTKYYELEFKVESTAFRRHNI 242
           FGGP EVGEA++RT+T + +R+DLKGTL+++++R+D     KYYELEFKVES  FRRHN+
Sbjct: 187 FGGPKEVGEAIVRTVTGSGQRADLKGTLLESSIRQDSERNLKYYELEFKVESPLFRRHNV 246

Query: 243 AVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSF 277
           AVCCA  G+LYTLNAQAPES W+ +KS++ T A SF
Sbjct: 247 AVCCAHSGRLYTLNAQAPESAWSEVKSEIYTTAKSF 276

[Close]

BLAST of CSPI02G04180 vs. TAIR10
Match: AT3G55330.1 (AT3G55330.1 PsbP-like protein 1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-08
Identity = 34/114 (29.82%), Postives = 57/114 (50.00%), Query Frame = 1


Query: 168 SVIVSPVPLDF-SIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYEL 227
           SV V+ VP    +I+ FG P ++ E +I+ +     +   K TLI  +  +     YY+ 
Sbjct: 120 SVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQ---KTTLIDASEHDVDGKTYYQF 179

Query: 228 EFKVESTAFRRHNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSV 281
           EF V++  + RH +       G  YTL   A E  W  +K ++ T+ +SF ++V
Sbjct: 180 EFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSFKITV 230

[Close]

BLAST of CSPI02G04180 vs. NCBI nr
Match: gi|449454159|ref|XP_004144823.1| (PREDICTED: psbP domain-containing protein 7, chloroplastic [Cucumis sativus])

HSP 1 Score: 552.0 bits (1421), Expect = 6.1e-154
Identity = 278/279 (99.64%), Postives = 278/279 (99.64%), Query Frame = 1


Query: 1   MAFSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60
           MAFSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA
Sbjct: 1   MAFSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60

Query: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLY 120
           IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLY
Sbjct: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLY 120

Query: 121 RAAEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSI 180
           RAAEK EYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSI
Sbjct: 121 RAAEKLEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSI 180

Query: 181 EAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRRHNI 240
           EAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRRHNI
Sbjct: 181 EAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRRHNI 240

Query: 241 AVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLS 280
           AVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLS
Sbjct: 241 AVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLS 279

[Close]

BLAST of CSPI02G04180 vs. NCBI nr
Match: gi|659070292|ref|XP_008454379.1| (PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 518.5 bits (1334), Expect = 7.5e-144
Identity = 261/279 (93.55%), Postives = 268/279 (96.06%), Query Frame = 1


Query: 1   MAFSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60
           MAFS C SGSQMIN RR+II AQSSSDDPAGKSAAEEFAPLA TFRRRLIVGIGSASLVA
Sbjct: 1   MAFSRCLSGSQMINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVA 60

Query: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLY 120
           +GANF GVTSFLLGLSPENSRRLRVDVVYPIGGY+RC DPNEGFEFIYPSSWVGDQRLLY
Sbjct: 61  VGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGFEFIYPSSWVGDQRLLY 120

Query: 121 RAAEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSI 180
           R AEKSEYERSLDPPPLT+STMDRRRRNVNEP+VAFGPPGSSGELNVSVIVS VP DFSI
Sbjct: 121 REAEKSEYERSLDPPPLTNSTMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSSVPPDFSI 180

Query: 181 EAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRRHNI 240
           EAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAF+RHNI
Sbjct: 181 EAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFQRHNI 240

Query: 241 AVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLS 280
           AVCCARRGKLYTLNAQAPESEW GLKSKMKTIA+SFCLS
Sbjct: 241 AVCCARRGKLYTLNAQAPESEWPGLKSKMKTIASSFCLS 279

[Close]

BLAST of CSPI02G04180 vs. NCBI nr
Match: gi|659070290|ref|XP_008454371.1| (PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 513.1 bits (1320), Expect = 3.1e-142
Identity = 261/282 (92.55%), Postives = 268/282 (95.04%), Query Frame = 1


Query: 1   MAFSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60
           MAFS C SGSQMIN RR+II AQSSSDDPAGKSAAEEFAPLA TFRRRLIVGIGSASLVA
Sbjct: 1   MAFSRCLSGSQMINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVA 60

Query: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGF---EFIYPSSWVGDQR 120
           +GANF GVTSFLLGLSPENSRRLRVDVVYPIGGY+RC DPNEGF   EFIYPSSWVGDQR
Sbjct: 61  VGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGFEHPEFIYPSSWVGDQR 120

Query: 121 LLYRAAEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD 180
           LLYR AEKSEYERSLDPPPLT+STMDRRRRNVNEP+VAFGPPGSSGELNVSVIVS VP D
Sbjct: 121 LLYREAEKSEYERSLDPPPLTNSTMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSSVPPD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRR 240
           FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAF+R
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFQR 240

Query: 241 HNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLS 280
           HNIAVCCARRGKLYTLNAQAPESEW GLKSKMKTIA+SFCLS
Sbjct: 241 HNIAVCCARRGKLYTLNAQAPESEWPGLKSKMKTIASSFCLS 282

[Close]

BLAST of CSPI02G04180 vs. NCBI nr
Match: gi|641837315|gb|KDO56270.1| (hypothetical protein CISIN_1g022699mg [Citrus sinensis])

HSP 1 Score: 382.1 bits (980), Expect = 8.4e-103
Identity = 191/263 (72.62%), Postives = 224/263 (85.17%), Query Frame = 1


Query: 21  SAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENS 80
           S Q  S  P GKS AEEFAPLA  F RRL+VG+G+ASLVA+GANFGGVTSFLLGLSPE+ 
Sbjct: 31  SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESG 90

Query: 81  RRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLYRAAEKSEYERSLDPPPLTDS 140
           R L++DV+YPIGGYSRCID NEGFEFIYP SWVGDQ LLYRAAEKSE+ERSLDPPP+  +
Sbjct: 91  RNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKN 150

Query: 141 --TMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGEAVIRTIT 200
             + + RR+N+NEP+VAFGPPGS+GELNVSVIVSPVP DFSIEAFGGP EVGEAV+RTIT
Sbjct: 151 VKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTIT 210

Query: 201 RASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAFRRHNIAVCCARRGKLYTLNAQ 260
            + +R D+KG+LI++ LRED L   KYYELEF+VES +F+RHNIAVCC R GKLYTLNAQ
Sbjct: 211 GSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQ 270

Query: 261 APESEWAGLKSKMKTIANSFCLS 280
           APES W  +KS++ T+A+SF L+
Sbjct: 271 APESVWPEVKSELYTVADSFSLT 292

[Close]

BLAST of CSPI02G04180 vs. NCBI nr
Match: gi|567881663|ref|XP_006433390.1| (hypothetical protein CICLE_v10002020mg [Citrus clementina])

HSP 1 Score: 382.1 bits (980), Expect = 8.4e-103
Identity = 191/263 (72.62%), Postives = 224/263 (85.17%), Query Frame = 1


Query: 21  SAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENS 80
           S Q  S  P GKS AEEFAPLA  F RRL+VG+G+ASLVA+GANFGGVTSFLLGLSPE+ 
Sbjct: 31  SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESG 90

Query: 81  RRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLYRAAEKSEYERSLDPPPLTDS 140
           R L++DV+YPIGGYSRCID NEGFEFIYP SWVGDQ LLYRAAEKSE+ERSLDPPP+  +
Sbjct: 91  RNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKN 150

Query: 141 --TMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGEAVIRTIT 200
             + + RR+N+NEP+VAFGPPGS+GELNVS IVSPVP DFSIEAFGGP EVGEAV+RTIT
Sbjct: 151 VKSSNGRRQNINEPIVAFGPPGSTGELNVSAIVSPVPPDFSIEAFGGPKEVGEAVVRTIT 210

Query: 201 RASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAFRRHNIAVCCARRGKLYTLNAQ 260
            + +R D+KG+LI++ LRED L   KYYELEF+VES +F+RHNIAVCCAR GKLYTLNAQ
Sbjct: 211 GSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCARNGKLYTLNAQ 270

Query: 261 APESEWAGLKSKMKTIANSFCLS 280
           APES W  +KS++ T+A+SF L+
Sbjct: 271 APESVWPEVKSELYTVADSFSLT 292

The following BLAST results are available for this feature:

BLAST of CSPI02G04180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPD7_ARATH	4.9e-95	64.13	PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana GN=PPD7 ...	[more]
PPL1_ARATH	3.0e-07	29.82	PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1	[more]

BLAST of CSPI02G04180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGE5_CUCSA	4.3e-154	99.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030040 PE=4 SV=1	[more]
V4T5F4_9ROSI	5.8e-103	72.62	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002020mg PE=4 SV=1	[more]
A0A067EQY2_CITSI	5.8e-103	72.62	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022699mg PE=4 SV=1	[more]
W9QGT7_9ROSA	8.4e-102	67.01	PsbP-like protein 1 OS=Morus notabilis GN=L484_013529 PE=4 SV=1	[more]
V4TAP0_9ROSI	2.4e-101	71.80	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002020mg PE=4 SV=1	[more]

BLAST of CSPI02G04180 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05410.2	2.8e-96	64.13	Photosystem II reaction center PsbP family protein	[more]
AT3G55330.1	1.7e-08	29.82	PsbP-like protein 1	[more]

BLAST of CSPI02G04180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454159\|ref\|XP_004144823.1\|	6.1e-154	99.64	PREDICTED: psbP domain-containing protein 7, chloroplastic [Cucumis sativus]	[more]
gi\|659070292\|ref\|XP_008454379.1\|	7.5e-144	93.55	PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X2 [Cucumis m...	[more]
gi\|659070290\|ref\|XP_008454371.1\|	3.1e-142	92.55	PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis m...	[more]
gi\|641837315\|gb\|KDO56270.1\|	8.4e-103	72.62	hypothetical protein CISIN_1g022699mg [Citrus sinensis]	[more]
gi\|567881663\|ref\|XP_006433390.1\|	8.4e-103	72.62	hypothetical protein CICLE_v10002020mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002683	PsbP
IPR016123	Mog1/PsbP_a/b/a-sand

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G04180.1	CSPI02G04180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 151..276 score: 4.1
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	G3DSA:3.40.1000.10		coord: 91..277 score: 1.9
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	unknown	SSF55724	Mog1p/PsbP-like	coord: 143..276 score: 2.2E-29coord: 95..113 score: 2.2
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 16..276 score: 6.8E
None	No IPR available	PANTHER	PTHR31407:SF16	PSBP DOMAIN-CONTAINING PROTEIN 7, CHLOROPLASTIC	coord: 16..276 score: 6.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G04180	Cla019913	Watermelon (97103) v1	cpiwmB149
CSPI02G04180	Csa2G030040	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G04180	ClCG02G015570	Watermelon (Charleston Gray)	cpiwcgB128
CSPI02G04180	Lsi11G005770	Bottle gourd (USVL1VR-Ls)	cpilsiB096
CSPI02G04180	MELO3C004233.2	Melon (DHL92) v3.6.1	cpimedB132
CSPI02G04180	CsaV3_2G006520	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G04180	Cla97C02G041290	Watermelon (97103) v2	cpiwmbB120
CSPI02G04180	Bhi06G001279	Wax gourd	cpiwgoB129
CSPI02G04180	Cucsa.091200	Cucumber (Gy14) v1	cgycpiB097
CSPI02G04180	CmaCh12G010680	Cucurbita maxima (Rimu)	cmacpiB174
CSPI02G04180	CmoCh12G010820	Cucurbita moschata (Rifu)	cmocpiB159
CSPI02G04180	Cp4.1LG07g08940	Cucurbita pepo (Zucchini)	cpecpiB821
CSPI02G04180	CsGy2G004300	Cucumber (Gy14) v2	cgybcpiB056
CSPI02G04180	Carg17538	Silver-seed gourd	carcpiB0751

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G04180	Cucurbita maxima (Rimu)	cmacpiB800
CSPI02G04180	Cucurbita maxima (Rimu)	cmacpiB796
CSPI02G04180	Cucurbita moschata (Rifu)	cmocpiB786
CSPI02G04180	Cucurbita moschata (Rifu)	cmocpiB787
CSPI02G04180	Melon (DHL92) v3.5.1	cpimeB139
CSPI02G04180	Cucurbita pepo (Zucchini)	cpecpiB097
CSPI02G04180	Cucurbita pepo (Zucchini)	cpecpiB100
CSPI02G04180	Silver-seed gourd	carcpiB0775