CsGy2G004300 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G004300
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	PsbP-like protein 1
Location	Chr2 : 2985753 .. 2987265 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTCAGTTGCTGCTTTTCCGGCAGCCAAATGTTTAATCTCCGACGTAACATAATATCAGCACAGTCGTCATCCGACGACCCTGCCGGTAAATCTGCGGCGGAGGAATTCGCACCGCTGGCAGTGACATTTCGGCGGAGGCTAATAGTTGGGATCGGGTCGGCTTCTTTGGTAGCCATCGGCGCAAATTTCGGCGGCGTGACGAGCTTCCTGCTCGGCTTGTCACCGGAAAACAGTCGGCGGTTGAGAGTGGATGTTGTTTATCCAATTGGAGGATACAGTCGGTGCATTGATCCCAATGAAGGATTTGGTTAGTAATTTCTTCTCCTCACACATACATAAGTTTTTTTCGGATAATTTGATTTTTTTTTCCTTAAAATTTCTCTCTTGTGAATGGTGACATAAGTATAAATTTACATAAACTAATCTCGATTTAATTACGGTTCAAAAATAATTCTGACCACTATATCTTAAAATTAGTTTAGTACTTTTAAAGTTTTTTTTTATTGTTATAATGGATTAAATAATAATAATAATAATTTATAGAAACATGATCATAAATACAAATTGAACAAAATATTTAAAATATAGAAATTTTTGCTATAATTTGTAAATTTATAAATTAAAAATTATATTTTATTAACATGTTACTGATATTTACAGTGAAATGATGTTTGAAAAAGTGCGAACTGAAAATACCAACGTTAAATTGGAACATTTGAATATATAGATTAAAATTTGAATTTTTGGAAGTATAAAAATTCTAATACTAAAATTTAGGTCCAACCGATTTTTGTAACCGCGCTTTGCTTAATTATCATCGTGCACTGCCTAAATATTTAAAGAACGTCCAGAGTTCATATACCCATCGAGTTGGGTAGGAGACCAGAGATTGCTTTATCGGGCAGCTGAAAAGTCAGAATATGAACGATCACTGGACCCTCCACCCTTGACCGATTCCACCATGGATCGTCGTCGTCGAAATGTTAACGAGCCAGTGGTTGCATTTGGTCCTCCAGGTTCGAGTGGAGAGCTCAATGTTAGCGTCATTGTGTCCCCAGTACCTCTTGATTTTTCGTAAGTTACCAACAAAACTTTATTGCTTCAATATTATGAGAATTTGAAATTCCGCCATCCTTCCACATTATTCTAACCAAAGTTCTTTTTCTCCTTTTCTTTTACTGTTCTTTGGATGAAACAAAGAATTGAAGCATTTGGAGGACCAAATGAAGTAGGGGAAGCTGTGATCAGAACTATCACAAGGGCCAGCAAACGCTCTGATCTTAAAGGAACATTGATACAAACAACTCTAAGAGAGGATTTGCTAACCAAATACTATGAACTAGAATTCAAGGTGGAAAGCACGGCGTTTCGGCGGCACAACATTGCAGTTTGTTGTGCTCGTCGGGGAAAATTATATACACTAAATGCCCAAGCACCTGAATCAGAATGGGCAGGTCTAAAATCAAAGATGAAGACAATTGCCAATTCTTTTTGTCTCTCAGCTTGA

mRNA sequence

ATGGCGTTCAGTTGCTGCTTTTCCGGCAGCCAAATGTTTAATCTCCGACGTAACATAATATCAGCACAGTCGTCATCCGACGACCCTGCCGGTAAATCTGCGGCGGAGGAATTCGCACCGCTGGCAGTGACATTTCGGCGGAGGCTAATAGTTGGGATCGGGTCGGCTTCTTTGGTAGCCATCGGCGCAAATTTCGGCGGCGTGACGAGCTTCCTGCTCGGCTTGTCACCGGAAAACAGTCGGCGGTTGAGAGTGGATGTTGTTTATCCAATTGGAGGATACAGTCGGTGCATTGATCCCAATGAAGGATTTGAACGTCCAGAGTTCATATACCCATCGAGTTGGGTAGGAGACCAGAGATTGCTTTATCGGGCAGCTGAAAAGTCAGAATATGAACGATCACTGGACCCTCCACCCTTGACCGATTCCACCATGGATCGTCGTCGTCGAAATGTTAACGAGCCAGTGGTTGCATTTGGTCCTCCAGGTTCGAGTGGAGAGCTCAATGTTAGCGTCATTGTGTCCCCAGTACCTCTTGATTTTTCAATTGAAGCATTTGGAGGACCAAATGAAGTAGGGGAAGCTGTGATCAGAACTATCACAAGGGCCAGCAAACGCTCTGATCTTAAAGGAACATTGATACAAACAACTCTAAGAGAGGATTTGCTAACCAAATACTATGAACTAGAATTCAAGGTGGAAAGCACGGCGTTTCGGCGGCACAACATTGCAGTTTGTTGTGCTCGTCGGGGAAAATTATATACACTAAATGCCCAAGCACCTGAATCAGAATGGGCAGGTCTAAAATCAAAGATGAAGACAATTGCCAATTCTTTTTGTCTCTCAGCTTGA

Coding sequence (CDS)

ATGGCGTTCAGTTGCTGCTTTTCCGGCAGCCAAATGTTTAATCTCCGACGTAACATAATATCAGCACAGTCGTCATCCGACGACCCTGCCGGTAAATCTGCGGCGGAGGAATTCGCACCGCTGGCAGTGACATTTCGGCGGAGGCTAATAGTTGGGATCGGGTCGGCTTCTTTGGTAGCCATCGGCGCAAATTTCGGCGGCGTGACGAGCTTCCTGCTCGGCTTGTCACCGGAAAACAGTCGGCGGTTGAGAGTGGATGTTGTTTATCCAATTGGAGGATACAGTCGGTGCATTGATCCCAATGAAGGATTTGAACGTCCAGAGTTCATATACCCATCGAGTTGGGTAGGAGACCAGAGATTGCTTTATCGGGCAGCTGAAAAGTCAGAATATGAACGATCACTGGACCCTCCACCCTTGACCGATTCCACCATGGATCGTCGTCGTCGAAATGTTAACGAGCCAGTGGTTGCATTTGGTCCTCCAGGTTCGAGTGGAGAGCTCAATGTTAGCGTCATTGTGTCCCCAGTACCTCTTGATTTTTCAATTGAAGCATTTGGAGGACCAAATGAAGTAGGGGAAGCTGTGATCAGAACTATCACAAGGGCCAGCAAACGCTCTGATCTTAAAGGAACATTGATACAAACAACTCTAAGAGAGGATTTGCTAACCAAATACTATGAACTAGAATTCAAGGTGGAAAGCACGGCGTTTCGGCGGCACAACATTGCAGTTTGTTGTGCTCGTCGGGGAAAATTATATACACTAAATGCCCAAGCACCTGAATCAGAATGGGCAGGTCTAAAATCAAAGATGAAGACAATTGCCAATTCTTTTTGTCTCTCAGCTTGA

Protein sequence

MAFSCCFSGSQMFNLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFERPEFIYPSSWVGDQRLLYRAAEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRRHNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA

Homology

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BLAST of CsGy2G004300 vs. NCBI nr
Match: XP_004144823.1 (PREDICTED: psbP domain-containing protein 7, chloroplastic [Cucumis sativus] >KGN60943.1 hypothetical protein Csa_2G030040 [Cucumis sativus])

HSP 1 Score: 545.4 bits (1404), Expect = 1.1e-151
Identity = 278/283 (98.23%), Postives = 278/283 (98.23%), Query Frame = 0


Query: 1   MAFSCCFSGSQMFNLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60
           MAFSCCFSGSQM NLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA
Sbjct: 1   MAFSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60

Query: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFERPEFIYPSSWVGDQR 120
           IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGF   EFIYPSSWVGDQR
Sbjct: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGF---EFIYPSSWVGDQR 120

Query: 121 LLYRAAEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD 180
           LLYRAAEK EYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD
Sbjct: 121 LLYRAAEKLEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRR 240
           FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRR
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRR 240

Query: 241 HNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA 284
           HNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA
Sbjct: 241 HNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA 280

[Close]

BLAST of CsGy2G004300 vs. NCBI nr
Match: XP_008454371.1 (PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis melo] >XP_016901931.1 PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis melo] >XP_016901934.1 PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 522.3 bits (1344), Expect = 1.0e-144
Identity = 263/283 (92.93%), Postives = 270/283 (95.41%), Query Frame = 0


Query: 1   MAFSCCFSGSQMFNLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60
           MAFS C SGSQM N RR+II AQSSSDDPAGKSAAEEFAPLA TFRRRLIVGIGSASLVA
Sbjct: 1   MAFSRCLSGSQMINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVA 60

Query: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFERPEFIYPSSWVGDQR 120
           +GANF GVTSFLLGLSPENSRRLRVDVVYPIGGY+RC DPNEGFE PEFIYPSSWVGDQR
Sbjct: 61  VGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGFEHPEFIYPSSWVGDQR 120

Query: 121 LLYRAAEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD 180
           LLYR AEKSEYERSLDPPPLT+STMDRRRRNVNEP+VAFGPPGSSGELNVSVIVS VP D
Sbjct: 121 LLYREAEKSEYERSLDPPPLTNSTMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSSVPPD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRR 240
           FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAF+R
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFQR 240

Query: 241 HNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA 284
           HNIAVCCARRGKLYTLNAQAPESEW GLKSKMKTIA+SFCLSA
Sbjct: 241 HNIAVCCARRGKLYTLNAQAPESEWPGLKSKMKTIASSFCLSA 283

[Close]

BLAST of CsGy2G004300 vs. NCBI nr
Match: XP_008454379.1 (PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 511.9 bits (1317), Expect = 1.4e-141
Identity = 261/283 (92.23%), Postives = 268/283 (94.70%), Query Frame = 0


Query: 1   MAFSCCFSGSQMFNLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60
           MAFS C SGSQM N RR+II AQSSSDDPAGKSAAEEFAPLA TFRRRLIVGIGSASLVA
Sbjct: 1   MAFSRCLSGSQMINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVA 60

Query: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFERPEFIYPSSWVGDQR 120
           +GANF GVTSFLLGLSPENSRRLRVDVVYPIGGY+RC DPNEGF   EFIYPSSWVGDQR
Sbjct: 61  VGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGF---EFIYPSSWVGDQR 120

Query: 121 LLYRAAEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD 180
           LLYR AEKSEYERSLDPPPLT+STMDRRRRNVNEP+VAFGPPGSSGELNVSVIVS VP D
Sbjct: 121 LLYREAEKSEYERSLDPPPLTNSTMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSSVPPD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRR 240
           FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAF+R
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFQR 240

Query: 241 HNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA 284
           HNIAVCCARRGKLYTLNAQAPESEW GLKSKMKTIA+SFCLSA
Sbjct: 241 HNIAVCCARRGKLYTLNAQAPESEWPGLKSKMKTIASSFCLSA 280

[Close]

BLAST of CsGy2G004300 vs. NCBI nr
Match: XP_022150742.1 (psbP domain-containing protein 7, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 482.6 bits (1241), Expect = 8.9e-133
Identity = 244/285 (85.61%), Postives = 259/285 (90.88%), Query Frame = 0


Query: 1   MAFSCCFSGSQMFNLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60
           MA S CFSGSQ+   RR+I SAQS SDDPAGKSAAE+FAPLAVTFRRRL VGIGSASLVA
Sbjct: 1   MALSRCFSGSQITYFRRSITSAQSPSDDPAGKSAAEQFAPLAVTFRRRLTVGIGSASLVA 60

Query: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFERPEFIYPSSWVGDQR 120
           +GAN  G+TSFLLG SPENSRRLR+DVVYPIGGYSRC + NEGF+ PEFIYP SWVGDQR
Sbjct: 61  VGANLAGITSFLLGFSPENSRRLRLDVVYPIGGYSRCFEANEGFQHPEFIYPESWVGDQR 120

Query: 121 LLYRAAEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD 180
           LLYRAAEKSE+ERSLDPPPLT ST DRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD
Sbjct: 121 LLYRAAEKSEFERSLDPPPLTTSTADRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAF 240
           FSIEAFGGP EVGEAVIRTIT+ASKR DLKGTLIQTTLREDL    KYYELEFKVES++F
Sbjct: 181 FSIEAFGGPKEVGEAVIRTITKASKRPDLKGTLIQTTLREDLQRNVKYYELEFKVESSSF 240

Query: 241 RRHNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA 284
           +RHNIAVCCARRGKLYTLNAQAPESEW  LK ++KTIANSFCLSA
Sbjct: 241 QRHNIAVCCARRGKLYTLNAQAPESEWPVLKPEIKTIANSFCLSA 285

[Close]

BLAST of CsGy2G004300 vs. NCBI nr
Match: XP_022937905.1 (psbP domain-containing protein 7, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 479.9 bits (1234), Expect = 5.8e-132
Identity = 241/285 (84.56%), Postives = 257/285 (90.18%), Query Frame = 0


Query: 1   MAFSCCFSGSQMFNLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60
           MAF+ CF G QM   RR I+SAQS S+DPAG SAAE+FAPLA TFRRRL VGIGSASLVA
Sbjct: 1   MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60

Query: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFERPEFIYPSSWVGDQR 120
           +GANFGGVTSFLLGLSPENSRRLR+DVVYPIGGYSRCID NEGFE PEFIYP+SWVGDQR
Sbjct: 61  VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR 120

Query: 121 LLYRAAEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD 180
           LLYRA EK+E+ERSLDPPPLT S MDRRRRNVNEP+VAFGPPGSSGELNVSVIVSPV  D
Sbjct: 121 LLYRAVEKTEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAF 240
           FSIEAFGGPNEVGEAVIRTITRASKR DLKGTLIQTTLRED     KYYELEFKVES++F
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSF 240

Query: 241 RRHNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA 284
           RRHN+AVC   +GKLYTLNAQAPESEW GLKS+M+TIANSFCLSA
Sbjct: 241 RRHNVAVCFVYQGKLYTLNAQAPESEWPGLKSEMRTIANSFCLSA 285

[Close]

BLAST of CsGy2G004300 vs. TAIR10
Match: AT3G05410.2 (Photosystem II reaction center PsbP family protein)

HSP 1 Score: 341.3 bits (874), Expect = 5.8e-94
Identity = 177/279 (63.44%), Postives = 215/279 (77.06%), Query Frame = 0


Query: 3   FSCCFSGSQMFNLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIG 62
           FS  +S      L   +I+ Q S D     + AEEF+PL   F RRL++G+GS+S++AIG
Sbjct: 7   FSLLYSSPTNVKLSNFLIAQQPSGD--LKTTPAEEFSPLVEKFNRRLLLGVGSSSVLAIG 66

Query: 63  ANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFERPEFIYPSSWVGDQRLL 122
           ANFGG TSF+LGLSP   R L++DV+YPIGGYSRCID  EGF   EFIYP++WVGDQ LL
Sbjct: 67  ANFGGTTSFILGLSPGIGRNLKLDVIYPIGGYSRCIDTVEGF---EFIYPATWVGDQTLL 126

Query: 123 YRAAEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFS 182
           YRAAEKSE E SLD PP  +S    RR+NVNEPVVAFGPPGS+GELNVSVIVSPV   FS
Sbjct: 127 YRAAEKSERENSLDLPPARNS----RRKNVNEPVVAFGPPGSTGELNVSVIVSPVSPSFS 186

Query: 183 IEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLRED--LLTKYYELEFKVESTAFRR 242
           IEAFGGP EVGEA++RT+T + +R+DLKGTL+++++R+D     KYYELEFKVES  FRR
Sbjct: 187 IEAFGGPKEVGEAIVRTVTGSGQRADLKGTLLESSIRQDSERNLKYYELEFKVESPLFRR 246

Query: 243 HNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSF 280
           HN+AVCCA  G+LYTLNAQAPES W+ +KS++ T A SF
Sbjct: 247 HNVAVCCAHSGRLYTLNAQAPESAWSEVKSEIYTTAKSF 276

[Close]

BLAST of CsGy2G004300 vs. TAIR10
Match: AT3G55330.1 (PsbP-like protein 1)

HSP 1 Score: 55.1 bits (131), Expect = 8.3e-08
Identity = 33/110 (30.00%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 171 SVIVSPVPLD-FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYEL 230
           SV V+ VP    +I+ FG P ++ E +I+ +     +   K TLI  +  +     YY+ 
Sbjct: 120 SVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQ---KTTLIDASEHDVDGKTYYQF 179

Query: 231 EFKVESTAFRRHNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSF 280
           EF V++  + RH +       G  YTL   A E  W  +K ++ T+ +SF
Sbjct: 180 EFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSF 226

[Close]

BLAST of CsGy2G004300 vs. Swiss-Prot
Match: sp|F4J7A7|PPD7_ARATH (PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD7 PE=2 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.0e-92
Identity = 177/279 (63.44%), Postives = 215/279 (77.06%), Query Frame = 0


Query: 3   FSCCFSGSQMFNLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIG 62
           FS  +S      L   +I+ Q S D     + AEEF+PL   F RRL++G+GS+S++AIG
Sbjct: 7   FSLLYSSPTNVKLSNFLIAQQPSGD--LKTTPAEEFSPLVEKFNRRLLLGVGSSSVLAIG 66

Query: 63  ANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFERPEFIYPSSWVGDQRLL 122
           ANFGG TSF+LGLSP   R L++DV+YPIGGYSRCID  EGF   EFIYP++WVGDQ LL
Sbjct: 67  ANFGGTTSFILGLSPGIGRNLKLDVIYPIGGYSRCIDTVEGF---EFIYPATWVGDQTLL 126

Query: 123 YRAAEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFS 182
           YRAAEKSE E SLD PP  +S    RR+NVNEPVVAFGPPGS+GELNVSVIVSPV   FS
Sbjct: 127 YRAAEKSERENSLDLPPARNS----RRKNVNEPVVAFGPPGSTGELNVSVIVSPVSPSFS 186

Query: 183 IEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLRED--LLTKYYELEFKVESTAFRR 242
           IEAFGGP EVGEA++RT+T + +R+DLKGTL+++++R+D     KYYELEFKVES  FRR
Sbjct: 187 IEAFGGPKEVGEAIVRTVTGSGQRADLKGTLLESSIRQDSERNLKYYELEFKVESPLFRR 246

Query: 243 HNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSF 280
           HN+AVCCA  G+LYTLNAQAPES W+ +KS++ T A SF
Sbjct: 247 HNVAVCCAHSGRLYTLNAQAPESAWSEVKSEIYTTAKSF 276

[Close]

BLAST of CsGy2G004300 vs. Swiss-Prot
Match: sp|P82538|PPL1_ARATH (PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPL1 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-06
Identity = 33/110 (30.00%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 171 SVIVSPVPLD-FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYEL 230
           SV V+ VP    +I+ FG P ++ E +I+ +     +   K TLI  +  +     YY+ 
Sbjct: 120 SVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQ---KTTLIDASEHDVDGKTYYQF 179

Query: 231 EFKVESTAFRRHNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSF 280
           EF V++  + RH +       G  YTL   A E  W  +K ++ T+ +SF
Sbjct: 180 EFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSF 226

[Close]

BLAST of CsGy2G004300 vs. TrEMBL
Match: tr|A0A0A0LGE5|A0A0A0LGE5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030040 PE=4 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 7.4e-152
Identity = 278/283 (98.23%), Postives = 278/283 (98.23%), Query Frame = 0


Query: 1   MAFSCCFSGSQMFNLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60
           MAFSCCFSGSQM NLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA
Sbjct: 1   MAFSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60

Query: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFERPEFIYPSSWVGDQR 120
           IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGF   EFIYPSSWVGDQR
Sbjct: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGF---EFIYPSSWVGDQR 120

Query: 121 LLYRAAEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD 180
           LLYRAAEK EYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD
Sbjct: 121 LLYRAAEKLEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRR 240
           FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRR
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRR 240

Query: 241 HNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA 284
           HNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA
Sbjct: 241 HNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA 280

[Close]

BLAST of CsGy2G004300 vs. TrEMBL
Match: tr|A0A1S4E131|A0A1S4E131_CUCME (psbP domain-containing protein 7, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494788 PE=4 SV=1)

HSP 1 Score: 522.3 bits (1344), Expect = 6.7e-145
Identity = 263/283 (92.93%), Postives = 270/283 (95.41%), Query Frame = 0


Query: 1   MAFSCCFSGSQMFNLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60
           MAFS C SGSQM N RR+II AQSSSDDPAGKSAAEEFAPLA TFRRRLIVGIGSASLVA
Sbjct: 1   MAFSRCLSGSQMINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVA 60

Query: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFERPEFIYPSSWVGDQR 120
           +GANF GVTSFLLGLSPENSRRLRVDVVYPIGGY+RC DPNEGFE PEFIYPSSWVGDQR
Sbjct: 61  VGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGFEHPEFIYPSSWVGDQR 120

Query: 121 LLYRAAEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD 180
           LLYR AEKSEYERSLDPPPLT+STMDRRRRNVNEP+VAFGPPGSSGELNVSVIVS VP D
Sbjct: 121 LLYREAEKSEYERSLDPPPLTNSTMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSSVPPD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRR 240
           FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAF+R
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFQR 240

Query: 241 HNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA 284
           HNIAVCCARRGKLYTLNAQAPESEW GLKSKMKTIA+SFCLSA
Sbjct: 241 HNIAVCCARRGKLYTLNAQAPESEWPGLKSKMKTIASSFCLSA 283

[Close]

BLAST of CsGy2G004300 vs. TrEMBL
Match: tr|A0A1S3BYG5|A0A1S3BYG5_CUCME (psbP domain-containing protein 7, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494788 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 9.1e-142
Identity = 261/283 (92.23%), Postives = 268/283 (94.70%), Query Frame = 0


Query: 1   MAFSCCFSGSQMFNLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60
           MAFS C SGSQM N RR+II AQSSSDDPAGKSAAEEFAPLA TFRRRLIVGIGSASLVA
Sbjct: 1   MAFSRCLSGSQMINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVA 60

Query: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFERPEFIYPSSWVGDQR 120
           +GANF GVTSFLLGLSPENSRRLRVDVVYPIGGY+RC DPNEGF   EFIYPSSWVGDQR
Sbjct: 61  VGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGF---EFIYPSSWVGDQR 120

Query: 121 LLYRAAEKSEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD 180
           LLYR AEKSEYERSLDPPPLT+STMDRRRRNVNEP+VAFGPPGSSGELNVSVIVS VP D
Sbjct: 121 LLYREAEKSEYERSLDPPPLTNSTMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSSVPPD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRR 240
           FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAF+R
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFQR 240

Query: 241 HNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA 284
           HNIAVCCARRGKLYTLNAQAPESEW GLKSKMKTIA+SFCLSA
Sbjct: 241 HNIAVCCARRGKLYTLNAQAPESEWPGLKSKMKTIASSFCLSA 280

[Close]

BLAST of CsGy2G004300 vs. TrEMBL
Match: tr|V4TAP0|V4TAP0_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002020mg PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 3.2e-102
Identity = 191/267 (71.54%), Postives = 225/267 (84.27%), Query Frame = 0


Query: 21  SAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENS 80
           S Q  S  P GKS AEEFAPLA  F RRL+VG+G+ASLVA+GANFGGVTSFLLGLSPE+ 
Sbjct: 31  SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESG 90

Query: 81  RRLRVDVVYPIGGYSRCIDPNEGFERPEFIYPSSWVGDQRLLYRAAEKSEYERSLDPPPL 140
           R L++DV+YPIGGYSRCID NEGF   EFIYP SWVGDQ LLYRAAEKSE+ERSLDPPP+
Sbjct: 91  RNLKLDVLYPIGGYSRCIDINEGFGHVEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPI 150

Query: 141 TDS--TMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGEAVIR 200
             +  + + RR+N+NEP+VAFGPPGS+GELNVS IVSPVP DFSIEAFGGP EVGEAV+R
Sbjct: 151 NKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSAIVSPVPPDFSIEAFGGPKEVGEAVVR 210

Query: 201 TITRASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAFRRHNIAVCCARRGKLYTL 260
           TIT + +R D+KG+LI++ LRED L   KYYELEF+VES +F+RHNIAVCCAR GKLYTL
Sbjct: 211 TITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCARNGKLYTL 270

Query: 261 NAQAPESEWAGLKSKMKTIANSFCLSA 284
           NAQAPES W  +KS++ T+A+SF L++
Sbjct: 271 NAQAPESVWPEVKSELYTVADSFSLTS 296

[Close]

BLAST of CsGy2G004300 vs. TrEMBL
Match: tr|V4T5F4|V4T5F4_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002020mg PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 5.9e-101
Identity = 191/267 (71.54%), Postives = 225/267 (84.27%), Query Frame = 0


Query: 21  SAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENS 80
           S Q  S  P GKS AEEFAPLA  F RRL+VG+G+ASLVA+GANFGGVTSFLLGLSPE+ 
Sbjct: 31  SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESG 90

Query: 81  RRLRVDVVYPIGGYSRCIDPNEGFERPEFIYPSSWVGDQRLLYRAAEKSEYERSLDPPPL 140
           R L++DV+YPIGGYSRCID NEGF   EFIYP SWVGDQ LLYRAAEKSE+ERSLDPPP+
Sbjct: 91  RNLKLDVLYPIGGYSRCIDINEGF---EFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPI 150

Query: 141 TDS--TMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGEAVIR 200
             +  + + RR+N+NEP+VAFGPPGS+GELNVS IVSPVP DFSIEAFGGP EVGEAV+R
Sbjct: 151 NKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSAIVSPVPPDFSIEAFGGPKEVGEAVVR 210

Query: 201 TITRASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAFRRHNIAVCCARRGKLYTL 260
           TIT + +R D+KG+LI++ LRED L   KYYELEF+VES +F+RHNIAVCCAR GKLYTL
Sbjct: 211 TITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCARNGKLYTL 270

Query: 261 NAQAPESEWAGLKSKMKTIANSFCLSA 284
           NAQAPES W  +KS++ T+A+SF L++
Sbjct: 271 NAQAPESVWPEVKSELYTVADSFSLTS 293

The following BLAST results are available for this feature:

BLAST of CsGy2G004300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144823.1	1.1e-151	98.23	PREDICTED: psbP domain-containing protein 7, chloroplastic [Cucumis sativus] >KG...	[more]
XP_008454371.1	1.0e-144	92.93	PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis m...	[more]
XP_008454379.1	1.4e-141	92.23	PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X2 [Cucumis m...	[more]
XP_022150742.1	8.9e-133	85.61	psbP domain-containing protein 7, chloroplastic isoform X1 [Momordica charantia]	[more]
XP_022937905.1	5.8e-132	84.56	psbP domain-containing protein 7, chloroplastic isoform X1 [Cucurbita moschata]	[more]

BLAST of CsGy2G004300 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05410.2	5.8e-94	63.44	Photosystem II reaction center PsbP family protein	[more]
AT3G55330.1	8.3e-08	30.00	PsbP-like protein 1	[more]

BLAST of CsGy2G004300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4J7A7\|PPD7_ARATH	1.0e-92	63.44	PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|P82538\|PPL1_ARATH	1.5e-06	30.00	PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPL1 PE=1 ...	[more]

BLAST of CsGy2G004300 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LGE5\|A0A0A0LGE5_CUCSA	7.4e-152	98.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030040 PE=4 SV=1	[more]
tr\|A0A1S4E131\|A0A1S4E131_CUCME	6.7e-145	92.93	psbP domain-containing protein 7, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S3BYG5\|A0A1S3BYG5_CUCME	9.1e-142	92.23	psbP domain-containing protein 7, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]
tr\|V4TAP0\|V4TAP0_9ROSI	3.2e-102	71.54	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002020mg PE=4 ...	[more]
tr\|V4T5F4\|V4T5F4_9ROSI	5.9e-101	71.54	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002020mg PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0019898	extrinsic component of membrane
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002683	PsbP
IPR016123	Mog1/PsbP_a/b/a-sand

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G004300.1	CsGy2G004300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	G3DSA:3.40.1000.10		coord: 87..281 e-value: 1.3E-40 score: 140.6
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	SSF55724	Mog1p/PsbP-like	coord: 96..116 coord: 146..279
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 154..279 e-value: 3.1E-24 score: 85.8
None	No IPR available	PANTHER	PTHR31407:SF16	PSBP DOMAIN-CONTAINING PROTEIN 7, CHLOROPLASTIC	coord: 22..281
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 22..281

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G004300	Cla019913	Watermelon (97103) v1	cgybwmB140
CsGy2G004300	Csa2G030040	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G004300	ClCG02G015570	Watermelon (Charleston Gray)	cgybwcgB119
CsGy2G004300	CSPI02G04180	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G004300	CmaCh12G010680	Cucurbita maxima (Rimu)	cgybcmaB178
CsGy2G004300	CmoCh12G010820	Cucurbita moschata (Rifu)	cgybcmoB170
CsGy2G004300	Lsi11G005770	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G004300	Cp4.1LG07g08940	Cucurbita pepo (Zucchini)	cgybcpeB271
CsGy2G004300	MELO3C004233.2	Melon (DHL92) v3.6.1	cgybmedB118
CsGy2G004300	CsaV3_2G006520	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G004300	Cla97C02G041290	Watermelon (97103) v2	cgybwmbB114
CsGy2G004300	Bhi06G001279	Wax gourd	cgybwgoB124
CsGy2G004300	Carg17538	Silver-seed gourd	carcgybB0713

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G004300	Cucurbita pepo (Zucchini)	cgybcpeB168
CsGy2G004300	Cucurbita maxima (Rimu)	cgybcmaB253
CsGy2G004300	Cucurbita maxima (Rimu)	cgybcmaB257
CsGy2G004300	Cucurbita moschata (Rifu)	cgybcmoB242
CsGy2G004300	Cucurbita moschata (Rifu)	cgybcmoB243
CsGy2G004300	Cucurbita pepo (Zucchini)	cgybcpeB166
CsGy2G004300	Melon (DHL92) v3.5.1	cgybmeB120
CsGy2G004300	Silver-seed gourd	carcgybB0737