Carg17538 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17538
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Photosystem II PsbP
Location	Cucurbita_argyrosperma_scaffold_183 : 92727 .. 95145 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGAACAGGCGCGTCGGAAAATGGCGTTTACTCGCTGCTTCGTCGGCGGTCAAATGATGCAGTTCCGGCGGGGAATAGTATCGGCGCAGTCACCGTCCGAAGATCCTGCCGGAAATTCTGCGGCGGAGCAATTCGCACCGCTGGCAGCGACGTTTCGACGGAGGCTAACTGTAGGGATTGGGTCGGCTTCACTGGTGGCCGTCGGCGCTAATTTTGGCGGCGTAACGAGCTTTCTGCTCGGATTGTCGCCGGAAAACAGTCGGCGTTTGAGACTCGATGTTGTTTATCCAATTGGAGGGTACAGCCGGTGCATTGATACCAATGAAGGATTTGGTCAGTAAGTTCTGCAACATACAATTTTTTATTTTTGGATATATTTTGTTTGTTCAGCGTTTAATTAATTAAAAATAATAATTTATTTTCAAATTTGTCAAAATTTTATCAATTTTTACTTCAAATTTTATAGTACAAAATTTATAAAATTAGAAAGAACCACAGCATTAAAAAGAAAAACCCGTTACCACTAGTCACGCGTTTTAAAGCCTTGAAGGGAAGCTGAAAGTTTTAAAGATTTGAGGGGAAGCCTGAAAGGTAAAGTCCAAAGAGAACACTATCTGCTAGCGGTGGATCCAGGCCGTTACAAATGGTATCAGAGCTAGACACCGGATGATGTGTCAGCCTTCTCGCTGTTCCTCGAAGGGGGGTAGCCAGCCTTCTCGCTGTTCCTCGAAGGAGGTAGACACGAGGCGGTGTGAAGGACGCTGGCCTCAAAGGGGGTGGATTTAGAGGCGGTCCCACATCGATTGGAGGAAGGAAAGAGTGCTAGCGAGGACGCTGGCCCCGAAAGTGGGTGGATTGTGATGTCTCACATTCGTTGAGAAGGAGAAAAAACCACCATTCATAAGGTTGTGGAAACCTTCCCCTAGTAGATGCCTTTTAAAGCCTTAAGGGAAAGTCCGAAAGTCCGAAAGTCAAATCTACTAGGGGTGAATAGTTGCATTTATGAATTTTGAATTTTTTTTTTAATTTTTTAATGGTTAATTTAGGCATTAACCAAACTTGACTTAGTTGAGTTAGTAGTGATTTTCATTTTTTTTTTTCACAAAATTAGTTAGTAAATTACAAAAATTGAATAAAAGATAAAAATTAAAATAATGGTAGTCTAATTTGTTTTTAAAAAATAATTTGAGGATGAAAGTTAAAAATTAAAAAAGAAAAAAAAAAAAAAAAAACTGTTAATTTTCAATAAATCTATATAATATTAATTAGTGTTTAAACTACATTTTCTGGTTTTATTGGTTTTTTTTTTTTTTTTTTTTCTCTTTAAGACATCACACTGCCTAAAATTTTCTGTTTAAAGAACATCCAGAGTTTATCTACCCAGCAAGTTGGGTAGGAGACCAGAGGTTGCTATATCGAGCAGTTGAGAAGTCTGAATTTGAACGATCGCTCGACCCTCCACCCTTGACCAGCTCGAACATGGATCGTCGTCGTCGGAATGTTAATGAGCCACTGGTTGCATTTGGTCCACCGGGTTCGAGCGGAGAACTCAACGTTAGCGTCATTGTGTCTCCTGTCTCACCCGATTTTTCGTAAGCTTACCTAACTTATCTACAATTACTTCAACATTATGATATGTCCTGTCCTAGATTTAAGATCTTTTAGAAATCCCTTAGAAGATGTTAAACACTAATGAAATATGAGGTTCGATCGATCTGAATTTACCTCACGGAAAGGAGTCGGGTTATAGGAACCTTAGGTTCATATAAACCATGACCTATGAGTTCAAGATTCATACAACTATTAGGAAGTACGAAAAATTAGCAATATAGACTTGGTTTATGCAGTCCAAATAAATGCACAACCTCGACCGACAAACTCATGTACCGAACATAAACTCGACTTCTTAAACTCGATTTGCTGTAAGCCGAACACCTCCTGAGAGACAAAAACAAGATGAAACTATATGCCTTAGGAGAAGTTCAAAATGAAATGAACCTACAGACTTGCTTCATTGAAAGGAAATTTGATTCTAAAAAGGTTTATGCTTCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTGGTTCTTTGGATCACAAAGAATTGAAGCATTTGGAGGACCAAATGAAGTAGGGGAAGCTGTAATCAGGACAATTACAAGGGCCAGCAAACGCCCTGATCTTAAAGGAACCTTGATACAAACAACTCTCAGAGAGGATTCGACAAGAAACGTCAAATACTACGAACTGGAATTTAAAGTAGAGAGCTCGTCTTTTCGACGTCACAACGTAGCGGTCTGTTTTGTTTATCAGGGCAAGTTATACACACTAAATGCCCAGGCACCTGAATCAGAATGGCCAGGTCTAAAATCAGAGATGAGGAAAATTGCCAATTCCTTTTGTCTCTCAGCTTGA

mRNA sequence

AAGAGAACAGGCGCGTCGGAAAATGGCGTTTACTCGCTGCTTCGTCGGCGGTCAAATGATGCAGTTCCGGCGGGGAATAGTATCGGCGCAGTCACCGTCCGAAGATCCTGCCGGAAATTCTGCGGCGGAGCAATTCGCACCGCTGGCAGCGACGTTTCGACGGAGGCTAACTGTAGGGATTGGGTCGGCTTCACTGGTGGCCGTCGGCGCTAATTTTGGCGGCGTAACGAGCTTTCTGCTCGGATTGTCGCCGGAAAACAGTCGGCGTTTGAGACTCGATGTTGTTTATCCAATTGGAGGGTACAGCCGGTGCATTGATACCAATGAAGGATTTGAACATCCAGAGTTTATCTACCCAGCAAGTTGGGTAGGAGACCAGAGGTTGCTATATCGAGCAGTTGAGAAGTCTGAATTTGAACGATCGCTCGACCCTCCACCCTTGACCAGCTCGAACATGGATCGTCGTCGTCGGAATGTTAATGAGCCACTGGTTGCATTTGGTCCACCGGGTTCGAGCGGAGAACTCAACGTTAGCGTCATTGTGTCTCCTGTCTCACCCGATTTTTCAATTGAAGCATTTGGAGGACCAAATGAAGTAGGGGAAGCTGTAATCAGGACAATTACAAGGGCCAGCAAACGCCCTGATCTTAAAGGAACCTTGATACAAACAACTCTCAGAGAGGATTCGACAAGAAACGTCAAATACTACGAACTGGAATTTAAAGTAGAGAGCTCGTCTTTTCGACGTCACAACGTAGCGGTCTGTTTTGTTTATCAGGGCAAGTTATACACACTAAATGCCCAGGCACCTGAATCAGAATGGCCAGGTCTAAAATCAGAGATGAGGAAAATTGCCAATTCCTTTTGTCTCTCAGCTTGA

Coding sequence (CDS)

ATGGCGTTTACTCGCTGCTTCGTCGGCGGTCAAATGATGCAGTTCCGGCGGGGAATAGTATCGGCGCAGTCACCGTCCGAAGATCCTGCCGGAAATTCTGCGGCGGAGCAATTCGCACCGCTGGCAGCGACGTTTCGACGGAGGCTAACTGTAGGGATTGGGTCGGCTTCACTGGTGGCCGTCGGCGCTAATTTTGGCGGCGTAACGAGCTTTCTGCTCGGATTGTCGCCGGAAAACAGTCGGCGTTTGAGACTCGATGTTGTTTATCCAATTGGAGGGTACAGCCGGTGCATTGATACCAATGAAGGATTTGAACATCCAGAGTTTATCTACCCAGCAAGTTGGGTAGGAGACCAGAGGTTGCTATATCGAGCAGTTGAGAAGTCTGAATTTGAACGATCGCTCGACCCTCCACCCTTGACCAGCTCGAACATGGATCGTCGTCGTCGGAATGTTAATGAGCCACTGGTTGCATTTGGTCCACCGGGTTCGAGCGGAGAACTCAACGTTAGCGTCATTGTGTCTCCTGTCTCACCCGATTTTTCAATTGAAGCATTTGGAGGACCAAATGAAGTAGGGGAAGCTGTAATCAGGACAATTACAAGGGCCAGCAAACGCCCTGATCTTAAAGGAACCTTGATACAAACAACTCTCAGAGAGGATTCGACAAGAAACGTCAAATACTACGAACTGGAATTTAAAGTAGAGAGCTCGTCTTTTCGACGTCACAACGTAGCGGTCTGTTTTGTTTATCAGGGCAAGTTATACACACTAAATGCCCAGGCACCTGAATCAGAATGGCCAGGTCTAAAATCAGAGATGAGGAAAATTGCCAATTCCTTTTGTCTCTCAGCTTGA

Protein sequence

MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQRLLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPDFSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSFRRHNVAVCFVYQGKLYTLNAQAPESEWPGLKSEMRKIANSFCLSA

Homology

[Close]

BLAST of Carg17538 vs. NCBI nr
Match: XP_022937905.1 (psbP domain-containing protein 7, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 567.4 bits (1461), Expect = 2.8e-158
Identity = 283/285 (99.30%), Postives = 284/285 (99.65%), Query Frame = 0


Query: 1   MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60
           MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA
Sbjct: 1   MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60

Query: 61  VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR 120
           VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR
Sbjct: 61  VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR 120

Query: 121 LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 180
           LLYRAVEK+EFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD
Sbjct: 121 LLYRAVEKTEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSF 240
           FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSF
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSF 240

Query: 241 RRHNVAVCFVYQGKLYTLNAQAPESEWPGLKSEMRKIANSFCLSA 286
           RRHNVAVCFVYQGKLYTLNAQAPESEWPGLKSEMR IANSFCLSA
Sbjct: 241 RRHNVAVCFVYQGKLYTLNAQAPESEWPGLKSEMRTIANSFCLSA 285

[Close]

BLAST of Carg17538 vs. NCBI nr
Match: XP_023537530.1 (psbP domain-containing protein 7, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537531.1 psbP domain-containing protein 7, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 559.3 bits (1440), Expect = 7.5e-156
Identity = 278/285 (97.54%), Postives = 281/285 (98.60%), Query Frame = 0


Query: 1   MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60
           MAF+RCFVGGQMM FRRG+VSAQSPSEDP GNSAAEQFAPLAATFRRRLTVGIGSASLVA
Sbjct: 1   MAFSRCFVGGQMMHFRRGVVSAQSPSEDPVGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60

Query: 61  VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR 120
           VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR
Sbjct: 61  VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR 120

Query: 121 LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 180
           LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD
Sbjct: 121 LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSF 240
           FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYE EFKVESSSF
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYEQEFKVESSSF 240

Query: 241 RRHNVAVCFVYQGKLYTLNAQAPESEWPGLKSEMRKIANSFCLSA 286
           RRHNVAVCFVY+GKLYTLNAQAPESEWPGLKSEMR IANSFCLSA
Sbjct: 241 RRHNVAVCFVYRGKLYTLNAQAPESEWPGLKSEMRTIANSFCLSA 285

[Close]

BLAST of Carg17538 vs. NCBI nr
Match: XP_022937906.1 (psbP domain-containing protein 7, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 553.9 bits (1426), Expect = 3.2e-154
Identity = 280/285 (98.25%), Postives = 281/285 (98.60%), Query Frame = 0


Query: 1   MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60
           MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA
Sbjct: 1   MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60

Query: 61  VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR 120
           VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGF   EFIYPASWVGDQR
Sbjct: 61  VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGF---EFIYPASWVGDQR 120

Query: 121 LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 180
           LLYRAVEK+EFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD
Sbjct: 121 LLYRAVEKTEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSF 240
           FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSF
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSF 240

Query: 241 RRHNVAVCFVYQGKLYTLNAQAPESEWPGLKSEMRKIANSFCLSA 286
           RRHNVAVCFVYQGKLYTLNAQAPESEWPGLKSEMR IANSFCLSA
Sbjct: 241 RRHNVAVCFVYQGKLYTLNAQAPESEWPGLKSEMRTIANSFCLSA 282

[Close]

BLAST of Carg17538 vs. NCBI nr
Match: XP_022965873.1 (psbP domain-containing protein 7, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 549.3 bits (1414), Expect = 7.8e-153
Identity = 273/285 (95.79%), Postives = 277/285 (97.19%), Query Frame = 0


Query: 1   MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60
           MAFTRCFVGGQMM FRRGIVSAQSPS DPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA
Sbjct: 1   MAFTRCFVGGQMMYFRRGIVSAQSPSGDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60

Query: 61  VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR 120
           VGANFGGVTSFLLGLSPENSRRL+LDVVYP+GGYSRCID NEGFEHPEFIYPA WVGDQR
Sbjct: 61  VGANFGGVTSFLLGLSPENSRRLKLDVVYPVGGYSRCIDNNEGFEHPEFIYPARWVGDQR 120

Query: 121 LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 180
           LLYRA EKSEFERSLDPPPLTSSNMDRRRR+VNEPLVAFGPPGSSGELNVSVIVSPVSPD
Sbjct: 121 LLYRAAEKSEFERSLDPPPLTSSNMDRRRRSVNEPLVAFGPPGSSGELNVSVIVSPVSPD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSF 240
           FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDS RNVKYYELEFKVESSSF
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSIRNVKYYELEFKVESSSF 240

Query: 241 RRHNVAVCFVYQGKLYTLNAQAPESEWPGLKSEMRKIANSFCLSA 286
           RRHN+AVCFVY GKLYTLNAQAPESEWPGLKSEMR IANSFCLSA
Sbjct: 241 RRHNIAVCFVYLGKLYTLNAQAPESEWPGLKSEMRTIANSFCLSA 285

[Close]

BLAST of Carg17538 vs. NCBI nr
Match: XP_023537532.1 (psbP domain-containing protein 7, chloroplastic isoform X3 [Cucurbita pepo subsp. pepo] >XP_023537533.1 psbP domain-containing protein 7, chloroplastic isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 545.8 bits (1405), Expect = 8.6e-152
Identity = 275/285 (96.49%), Postives = 278/285 (97.54%), Query Frame = 0


Query: 1   MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60
           MAF+RCFVGGQMM FRRG+VSAQSPSEDP GNSAAEQFAPLAATFRRRLTVGIGSASLVA
Sbjct: 1   MAFSRCFVGGQMMHFRRGVVSAQSPSEDPVGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60

Query: 61  VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR 120
           VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGF   EFIYPASWVGDQR
Sbjct: 61  VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGF---EFIYPASWVGDQR 120

Query: 121 LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 180
           LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD
Sbjct: 121 LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSF 240
           FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYE EFKVESSSF
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYEQEFKVESSSF 240

Query: 241 RRHNVAVCFVYQGKLYTLNAQAPESEWPGLKSEMRKIANSFCLSA 286
           RRHNVAVCFVY+GKLYTLNAQAPESEWPGLKSEMR IANSFCLSA
Sbjct: 241 RRHNVAVCFVYRGKLYTLNAQAPESEWPGLKSEMRTIANSFCLSA 282

[Close]

BLAST of Carg17538 vs. TAIR10
Match: AT3G05410.2 (Photosystem II reaction center PsbP family protein)

HSP 1 Score: 352.4 bits (903), Expect = 2.5e-97
Identity = 177/260 (68.08%), Postives = 210/260 (80.77%), Query Frame = 0


Query: 22  AQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENSR 81
           AQ PS D    + AE+F+PL   F RRL +G+GS+S++A+GANFGG TSF+LGLSP   R
Sbjct: 25  AQQPSGD-LKTTPAEEFSPLVEKFNRRLLLGVGSSSVLAIGANFGGTTSFILGLSPGIGR 84

Query: 82  RLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQRLLYRAVEKSEFERSLDPPPLT 141
            L+LDV+YPIGGYSRCIDT EGF   EFIYPA+WVGDQ LLYRA EKSE E SLD PP  
Sbjct: 85  NLKLDVIYPIGGYSRCIDTVEGF---EFIYPATWVGDQTLLYRAAEKSERENSLDLPPAR 144

Query: 142 SSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPDFSIEAFGGPNEVGEAVIRTIT 201
           +S    RR+NVNEP+VAFGPPGS+GELNVSVIVSPVSP FSIEAFGGP EVGEA++RT+T
Sbjct: 145 NS----RRKNVNEPVVAFGPPGSTGELNVSVIVSPVSPSFSIEAFGGPKEVGEAIVRTVT 204

Query: 202 RASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSFRRHNVAVCFVYQGKLYTLNAQ 261
            + +R DLKGTL+++++R+DS RN+KYYELEFKVES  FRRHNVAVC  + G+LYTLNAQ
Sbjct: 205 GSGQRADLKGTLLESSIRQDSERNLKYYELEFKVESPLFRRHNVAVCCAHSGRLYTLNAQ 264

Query: 262 APESEWPGLKSEMRKIANSF 282
           APES W  +KSE+   A SF
Sbjct: 265 APESAWSEVKSEIYTTAKSF 276

[Close]

BLAST of Carg17538 vs. Swiss-Prot
Match: sp|F4J7A7|PPD7_ARATH (PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD7 PE=2 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 4.6e-96
Identity = 177/260 (68.08%), Postives = 210/260 (80.77%), Query Frame = 0


Query: 22  AQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENSR 81
           AQ PS D    + AE+F+PL   F RRL +G+GS+S++A+GANFGG TSF+LGLSP   R
Sbjct: 25  AQQPSGD-LKTTPAEEFSPLVEKFNRRLLLGVGSSSVLAIGANFGGTTSFILGLSPGIGR 84

Query: 82  RLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQRLLYRAVEKSEFERSLDPPPLT 141
            L+LDV+YPIGGYSRCIDT EGF   EFIYPA+WVGDQ LLYRA EKSE E SLD PP  
Sbjct: 85  NLKLDVIYPIGGYSRCIDTVEGF---EFIYPATWVGDQTLLYRAAEKSERENSLDLPPAR 144

Query: 142 SSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPDFSIEAFGGPNEVGEAVIRTIT 201
           +S    RR+NVNEP+VAFGPPGS+GELNVSVIVSPVSP FSIEAFGGP EVGEA++RT+T
Sbjct: 145 NS----RRKNVNEPVVAFGPPGSTGELNVSVIVSPVSPSFSIEAFGGPKEVGEAIVRTVT 204

Query: 202 RASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSFRRHNVAVCFVYQGKLYTLNAQ 261
            + +R DLKGTL+++++R+DS RN+KYYELEFKVES  FRRHNVAVC  + G+LYTLNAQ
Sbjct: 205 GSGQRADLKGTLLESSIRQDSERNLKYYELEFKVESPLFRRHNVAVCCAHSGRLYTLNAQ 264

Query: 262 APESEWPGLKSEMRKIANSF 282
           APES W  +KSE+   A SF
Sbjct: 265 APESAWSEVKSEIYTTAKSF 276

[Close]

BLAST of Carg17538 vs. TrEMBL
Match: tr|A0A1S4E131|A0A1S4E131_CUCME (psbP domain-containing protein 7, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494788 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 7.7e-133
Identity = 240/285 (84.21%), Postives = 258/285 (90.53%), Query Frame = 0


Query: 1   MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60
           MAF+RC  G QM+ FRR I+ AQS S+DPAG SAAE+FAPLAATFRRRL VGIGSASLVA
Sbjct: 1   MAFSRCLSGSQMINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVA 60

Query: 61  VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR 120
           VGANF GVTSFLLGLSPENSRRLR+DVVYPIGGY+RC D NEGFEHPEFIYP+SWVGDQR
Sbjct: 61  VGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGFEHPEFIYPSSWVGDQR 120

Query: 121 LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 180
           LLYR  EKSE+ERSLDPPPLT+S MDRRRRNVNEPLVAFGPPGSSGELNVSVIVS V PD
Sbjct: 121 LLYREAEKSEYERSLDPPPLTNSTMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSSVPPD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSF 240
           FSIEAFGGPNEVGEAVIRTITRASKR DLKGTLIQTTLRED     KYYELEFKVES++F
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAF 240

Query: 241 RRHNVAVCFVYQGKLYTLNAQAPESEWPGLKSEMRKIANSFCLSA 286
           +RHN+AVC   +GKLYTLNAQAPESEWPGLKS+M+ IA+SFCLSA
Sbjct: 241 QRHNIAVCCARRGKLYTLNAQAPESEWPGLKSKMKTIASSFCLSA 283

[Close]

BLAST of Carg17538 vs. TrEMBL
Match: tr|A0A1S3BYG5|A0A1S3BYG5_CUCME (psbP domain-containing protein 7, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494788 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 8.9e-129
Identity = 237/285 (83.16%), Postives = 255/285 (89.47%), Query Frame = 0


Query: 1   MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60
           MAF+RC  G QM+ FRR I+ AQS S+DPAG SAAE+FAPLAATFRRRL VGIGSASLVA
Sbjct: 1   MAFSRCLSGSQMINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVA 60

Query: 61  VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR 120
           VGANF GVTSFLLGLSPENSRRLR+DVVYPIGGY+RC D NEGF   EFIYP+SWVGDQR
Sbjct: 61  VGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGF---EFIYPSSWVGDQR 120

Query: 121 LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 180
           LLYR  EKSE+ERSLDPPPLT+S MDRRRRNVNEPLVAFGPPGSSGELNVSVIVS V PD
Sbjct: 121 LLYREAEKSEYERSLDPPPLTNSTMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSSVPPD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSF 240
           FSIEAFGGPNEVGEAVIRTITRASKR DLKGTLIQTTLRED     KYYELEFKVES++F
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAF 240

Query: 241 RRHNVAVCFVYQGKLYTLNAQAPESEWPGLKSEMRKIANSFCLSA 286
           +RHN+AVC   +GKLYTLNAQAPESEWPGLKS+M+ IA+SFCLSA
Sbjct: 241 QRHNIAVCCARRGKLYTLNAQAPESEWPGLKSKMKTIASSFCLSA 280

[Close]

BLAST of Carg17538 vs. TrEMBL
Match: tr|A0A0A0LGE5|A0A0A0LGE5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030040 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 8.9e-129
Identity = 238/285 (83.51%), Postives = 254/285 (89.12%), Query Frame = 0


Query: 1   MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60
           MAF+ CF G QM+  RR I+SAQS S+DPAG SAAE+FAPLA TFRRRL VGIGSASLVA
Sbjct: 1   MAFSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60

Query: 61  VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR 120
           +GANFGGVTSFLLGLSPENSRRLR+DVVYPIGGYSRCID NEGF   EFIYP+SWVGDQR
Sbjct: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGF---EFIYPSSWVGDQR 120

Query: 121 LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 180
           LLYRA EK E+ERSLDPPPLT S MDRRRRNVNEP+VAFGPPGSSGELNVSVIVSPV  D
Sbjct: 121 LLYRAAEKLEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD 180

Query: 181 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSF 240
           FSIEAFGGPNEVGEAVIRTITRASKR DLKGTLIQTTLRED     KYYELEFKVES++F
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAF 240

Query: 241 RRHNVAVCFVYQGKLYTLNAQAPESEWPGLKSEMRKIANSFCLSA 286
           RRHN+AVC   +GKLYTLNAQAPESEW GLKS+M+ IANSFCLSA
Sbjct: 241 RRHNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA 280

[Close]

BLAST of Carg17538 vs. TrEMBL
Match: tr|V4TAP0|V4TAP0_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002020mg PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 1.8e-105
Identity = 193/267 (72.28%), Postives = 225/267 (84.27%), Query Frame = 0


Query: 21  SAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENS 80
           S Q  S  P G S AE+FAPLAA F RRL VG+G+ASLVAVGANFGGVTSFLLGLSPE+ 
Sbjct: 31  SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESG 90

Query: 81  RRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQRLLYRAVEKSEFERSLDPPPL 140
           R L+LDV+YPIGGYSRCID NEGF H EFIYP SWVGDQ LLYRA EKSEFERSLDPPP+
Sbjct: 91  RNLKLDVLYPIGGYSRCIDINEGFGHVEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPI 150

Query: 141 TSS--NMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPDFSIEAFGGPNEVGEAVIR 200
             +  + + RR+N+NEP+VAFGPPGS+GELNVS IVSPV PDFSIEAFGGP EVGEAV+R
Sbjct: 151 NKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSAIVSPVPPDFSIEAFGGPKEVGEAVVR 210

Query: 201 TITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSFRRHNVAVCFVYQGKLYTL 260
           TIT + +RPD+KG+LI++ LREDS R++KYYELEF+VES SF+RHN+AVC    GKLYTL
Sbjct: 211 TITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCARNGKLYTL 270

Query: 261 NAQAPESEWPGLKSEMRKIANSFCLSA 286
           NAQAPES WP +KSE+  +A+SF L++
Sbjct: 271 NAQAPESVWPEVKSELYTVADSFSLTS 296

[Close]

BLAST of Carg17538 vs. TrEMBL
Match: tr|A0A067EQY2|A0A067EQY2_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g022699mg PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 9.9e-104
Identity = 193/267 (72.28%), Postives = 225/267 (84.27%), Query Frame = 0


Query: 21  SAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENS 80
           S Q  S  P G S AE+FAPLAA F RRL VG+G+ASLVAVGANFGGVTSFLLGLSPE+ 
Sbjct: 31  SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESG 90

Query: 81  RRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQRLLYRAVEKSEFERSLDPPPL 140
           R L+LDV+YPIGGYSRCID NEGF   EFIYP SWVGDQ LLYRA EKSEFERSLDPPP+
Sbjct: 91  RNLKLDVLYPIGGYSRCIDINEGF---EFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPI 150

Query: 141 TSS--NMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPDFSIEAFGGPNEVGEAVIR 200
             +  + + RR+N+NEP+VAFGPPGS+GELNVSVIVSPV PDFSIEAFGGP EVGEAV+R
Sbjct: 151 NKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVR 210

Query: 201 TITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSFRRHNVAVCFVYQGKLYTL 260
           TIT + +RPD+KG+LI++ LREDS R++KYYELEF+VES SF+RHN+AVC    GKLYTL
Sbjct: 211 TITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTL 270

Query: 261 NAQAPESEWPGLKSEMRKIANSFCLSA 286
           NAQAPES WP +KSE+  +A+SF L++
Sbjct: 271 NAQAPESVWPEVKSELYTVADSFSLTS 293

The following BLAST results are available for this feature:

BLAST of Carg17538 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937905.1	2.8e-158	99.30	psbP domain-containing protein 7, chloroplastic isoform X1 [Cucurbita moschata]	[more]
XP_023537530.1	7.5e-156	97.54	psbP domain-containing protein 7, chloroplastic isoform X1 [Cucurbita pepo subsp...	[more]
XP_022937906.1	3.2e-154	98.25	psbP domain-containing protein 7, chloroplastic isoform X2 [Cucurbita moschata]	[more]
XP_022965873.1	7.8e-153	95.79	psbP domain-containing protein 7, chloroplastic isoform X1 [Cucurbita maxima]	[more]
XP_023537532.1	8.6e-152	96.49	psbP domain-containing protein 7, chloroplastic isoform X3 [Cucurbita pepo subsp...	[more]

BLAST of Carg17538 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05410.2	2.5e-97	68.08	Photosystem II reaction center PsbP family protein	[more]

BLAST of Carg17538 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4J7A7\|PPD7_ARATH	4.6e-96	68.08	PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg17538 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E131\|A0A1S4E131_CUCME	7.7e-133	84.21	psbP domain-containing protein 7, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S3BYG5\|A0A1S3BYG5_CUCME	8.9e-129	83.16	psbP domain-containing protein 7, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]
tr\|A0A0A0LGE5\|A0A0A0LGE5_CUCSA	8.9e-129	83.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030040 PE=4 SV=1	[more]
tr\|V4TAP0\|V4TAP0_9ROSI	1.8e-105	72.28	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002020mg PE=4 ...	[more]
tr\|A0A067EQY2\|A0A067EQY2_CITSI	9.9e-104	72.28	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g022699mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0019898	extrinsic component of membrane
GO:0009654	photosystem II oxygen evolving complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR016123	Mog1/PsbP_a/b/a-sand
IPR002683	PsbP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17538-RA	Carg17538-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 157..281 e-value: 6.0E-25 score: 88.1
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	G3DSA:3.40.1000.10		coord: 88..283 e-value: 3.0E-40 score: 139.5
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	SSF55724	Mog1p/PsbP-like	coord: 96..116 coord: 146..281
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 23..283
None	No IPR available	PANTHER	PTHR31407:SF16	PSBP DOMAIN-CONTAINING PROTEIN 7, CHLOROPLASTIC	coord: 23..283

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17538	Cla019913	Watermelon (97103) v1	carwmB0714
Carg17538	Csa2G030040	Cucumber (Chinese Long) v2	carcuB0735
Carg17538	ClCG02G015570	Watermelon (Charleston Gray)	carwcgB0692
Carg17538	CSPI02G04180	Wild cucumber (PI 183967)	carcpiB0751
Carg17538	Cucsa.091200	Cucumber (Gy14) v1	carcgyB0803
Carg17538	CmaCh12G010680	Cucurbita maxima (Rimu)	carcmaB1000
Carg17538	CmoCh12G010820	Cucurbita moschata (Rifu)	carcmoB0973
Carg17538	Lsi11G005770	Bottle gourd (USVL1VR-Ls)	carlsiB654
Carg17538	Cp4.1LG07g08940	Cucurbita pepo (Zucchini)	carcpeB1006
Carg17538	CsGy2G004300	Cucumber (Gy14) v2	carcgybB0713
Carg17538	MELO3C004233.2	Melon (DHL92) v3.6.1	carmedB0724
Carg17538	CsaV3_2G006520	Cucumber (Chinese Long) v3	carcucB0754
Carg17538	Cla97C02G041290	Watermelon (97103) v2	carwmbB0746
Carg17538	Bhi06G001279	Wax gourd	carwgoB0842

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17538	Cucurbita maxima (Rimu)	carcmaB1001
Carg17538	Cucurbita moschata (Rifu)	carcmoB0974
Carg17538	Cucurbita pepo (Zucchini)	carcpeB1005
Carg17538	Melon (DHL92) v3.5.1	carmeB0711