Cp4.1LG07g08940 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g08940
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Photosystem II reaction center PsbP family protein
Location	Cp4.1LG07 : 8070072 .. 8073403 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCGCCATTGTTCCTCTTCAAGAGAACAGGCGCGTCGGAAAATGGCGTTTAGTCGCTGCTTCGTCGGCGGTCAAATGATGCATTTCCGGCGGGGAGTAGTATCGGCGCAGTCACCGTCCGAAGACCCCGTCGGAAATTCTGCGGCGGAGCAATTCGCACCGCTGGCAGCGACGTTTCGACGGAGGCTAACTGTAGGGATTGGGTCGGCTTCTCTGGTGGCCGTCGGCGCTAATTTTGGCGGCGTAACGAGCTTTCTGCTCGGATTGTCGCCGGAAAACAGTCGGCGTTTGAGACTCGATGTTGTTTATCCAATTGGAGGGTACAGCCGGTGCATTGATACCAATGAAGGATTTGGTCAGTAAGTTCTGCAACATACAATTTTTTTCTTTTTGGATATATTTTTTTTTTGTTCAGCGTTTAATTAATTGNTGTCCATTGGTGTGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCGTAAGAGCCTATACTCAGAAGTGGACAATATCACATCATTGTAGACATCGGTGACTCCTAAGTTTTAATTCTTTAATGGTTAAAGTCGAGGGATTTGTTAATATATTTGAAAGTTTAAACCAAGAATTCATTCATTTTTGCTGATTGGTCCTCAAACTTTGGCAAAATAGTAGAACAGTCCCCAGAGGGAGAATGGATAGAGGGATCACAAAAGTCACATAAATATAATTGATTAGCTTCGCCATTGTTCCTCTTCAAGAGAACAGGCGCGTCGGAAAATGGCGTTTAGTCGCTGCTTCGTCGGCGGTCAAATGATGCATTTCCGGCGGGGAGTAGTATCGGCGCAGTCACCGTCCGAAGACCCCGTCGGAAATTCTGCGGCGGAGCAATTCGCACCGCTGGCAGCGACGTTTCGACGGAGGCTAACTGTAGGGATTGGGTCGGCTTCTCTGGTGGCCGTCGGCGCTAATTTTGGCGGCGTAACGAGCTTTCTGCTCGGATTGTCGCCGGAAAACAGTCGGCGTTTGAGACTCGATGTTGTTTATCCAATTGGAGGGTACAGCCGGTGCATTGATACCAATGAAGGATTTGGTCAGTAAGTTCTGCAACATACAATTTTTTTCTTTTTGGATATATTTTTTTTTTGTTCAGCGTTTAATTAATTGAAAATAATAATTTATTTTCAAATTTTTCAAAATTGTATCAATTTTTACTTTATAGTACAAAATTTATAAAATTAGAAAGAACCACAACATTAAAAAGAAAAACCATTTATAAGAAGGTGTGGAAACCTTCCCCTTCCCTCTAAGGAGAAGTCCAAAGGGACAGTATCTGCTAGCGGTGGATCTGAGCCGTTACAAATGGTATCAGAGCCAAAAAGCCTTGAGGGGAAGCCCGAAAGGGGAAGCCCGAAAGGGGAAGCCCGAAAGGGGAAGTCCAAAGGGACAGTATCTGCTAGTGGTGGATCTGAGCCGTTACAAATGGTATCAGAGCCAGAAAGCATTGAGGGGAAGCCCGAAAGGGGAAGTCCAAAGGGACAGTATCCGCTAGTGGTGGATCTGGGCCGTTACAAATGGTATCAGAGCCAGACATTGGACGATGTGTCAGCCTTCTTGTTGTTCCCGAAGGGGGGTAGACACGAGGCGGTGTATTAGTAAGGACGCTGGGCTCCAAAGGGGGTGGATTTGAGGGTAGTTCCACATCGATTGGAGGAAGGAAAGAGTGCCAGCGAGGACGTTGGGCCCCGAAGGGAGGTGAATTGTGATATCCCACCTTGGTTGGGGAGGAGAACAGACCATCATTTATAAGGTTGTGGAAACCTTCCCCTAGCAGGCGCGTTTTAAAGCCTTGAAGGAAAGCCCGAAAACGAAAGTCCAAAGAGGACAATATCTACTAGTGGTGAATCTGGACCAAATTTTGATTTTTTTTTTTTTAATGGTTAATTTAGGCATTAACCAAACTTAATTTGATTGGCCTTAGTTGAGTTAGTAGTGATTTTCAATTTTATTTTCACAAAATTAGTTAGTAGATTACAAAAATTGAATAAAAGATAAAACTTATAATATTGGTAGTCTAATTTGTTTTTAAAAAATAATTTGATGATGAAAATTAAAAATTAAAAATTAAAAAAAAAAAAAAAAAAAAACAGTTAATTTTCAATAAATCTATATAATATTAGTTAGTGTTTAAACTACATTTTATGGTTTTATTGTTTTTTTTTTTTTTTCTTTAACACATCACATTGCCTAAAATTTTCTGTTTAAAGAATNATCACATTGCCTAAAATTCTGTTTAAAGAACATCCAGAGTTTATATACCCAGCAAGTTGGGTAGGAGACCAGAGGTTGCTATATCGAGCAGTTGAAAAGTCCGAATTTGAACGATCGCTCGACCCTCCACCCTTGACCAGTTCCAACATGGATCGTCGTCGTCGAAATGTTAATGAGCCTCTGGTTGCATTTGGTCCACCGGGTTCGAGCGGAGAGCTCAACGTTAGCGTCATTGTGTCTCCTGTCTCACCCGATTTTTCGTAAGCTTACCTAACTTATCTACAATTACTTCCAACATTATGACATGTCCTGTCCTAGATTTAAGATCTTTTAGAAATCCCTTAGAAGATGTTCAACTCTAATGAAATCTGAGGTTCGACGATCTGAATTTACACAACGGAAAGGAGTCGGGTTATGAGAACTAAGGTTTCGTATAAACCATGATCGGTGAGTTCATGATTTATAAAACTATTAGGAAGTACGAAAAATTAGCAATATAGACTTAGTTTATGCAGTCCAAACAAATGCACAACCTCGACTGACAAACTCATGTACCGAACATAAACTCGACTTCATAAACTCGATTTGCTGTAAACCGAACACCTCCTGAGAGACAAAAACAAGATGAAACTATATGCCTTACAGATAATCAAATCTCATCCTATGCTCAGGATTTCTGTTAGTAGGACTTTCCTCATTGAAAGGAGATTTGATTCTAAAAAGGTTTATGTTTTTTTTTTTTTTTTTTTTTTTTTGTTGGTTCTTTGGATCACAAAGAATTGAAGCATTTGGAGGTCCAAATGAAGTAGGGGAAGCTGTGATCAGGACAATTACAAGGGCCAGCAAACGCCCTGATCTTAAAGGAACCTTGATACAAACAACTCTCAGAGAGGATTCGACAAGAAACGTCAAATACTACGAACAGGAATTTAAAGTAGAGAGCTCGTCGTTTCGACGTCACAACGTAGCGGTCTGTTTTGTTTATCGGGGCAAGTTATACACACTAAATGCCCAGGCACCTGAATCAGAATGGCCAGGTCTAAAATCAGAGATGAGGACAATTGCCAATTCCTTTTGTCTCTCAGCTTGA

mRNA sequence

CTTCGCCATTGTTCCTCTTCAAGAGAACAGGCGCGTCGGAAAATGGCGTTTAGTCGCTGCTTCGTCGGCGGTCAAATGATGCATTTCCGGCGGGGAGTAGTATCGGCGCAGTCACCGTCCGAAGACCCCGTCGGAAATTCTGCGGCGGAGCAATTCGCACCGCTGGCAGCGACGTTTCGACGGAGGCTAACTGTAGGGATTGGGTCGGCTTCTCTGGTGGCCGTCGGCGCTAATTTTGGCGGCGTAACGAGCTTTCTGCTCGGATTGTCGCCGGAAAACAGTCGGCGTTTGAGACTCGATGTTGTTTATCCAATTGGAGGGTACAGCCGGTGCATTGATACCAATGAAGGATTTGGTCAAGAACAGGCGCGTCGGAAAATGGCGTTTAGTCGCTGCTTCGTCGGCGGTCAAATGATGCATTTCCGGCGGGGAGTAGTATCGGCGCAGTCACCGTCCGAAGACCCCGTCGGAAATTCTGCGGCGGAGCAATTCGCACCGCTGGCAGCGACGTTTCGACGGAGGCTAACTGTAGGGATTGGGTCGGCTTCTCTGGTGGCCGTCGGCGCTAATTTTGGCGGCGTAACGAGCTTTCTGCTCGGATTGTCGCCGGAAAACAGTCGGCGTTTGAGACTCGATGTTGTTTATCCAATTGGAGGGTACAGCCGGTGCATTGATACCAATGAAGGATTTGAACATCCAGAGTTTATATACCCAGCAAGTTGGGTAGGAGACCAGAGGTTGCTATATCGAGCAGTTGAAAAGTCCGAATTTGAACGATCGCTCGACCCTCCACCCTTGACCAGTTCCAACATGGATCGTCGTCGTCGAAATGTTAATGAGCCTCTGGTTGCATTTGGTCCACCGGGTTCGAGCGGAGAGCTCAACGTTAGCGTCATTGTGTCTCCTGTCTCACCCGATTTTTCAATTGAAGCATTTGGAGGTCCAAATGAAGTAGGGGAAGCTGTGATCAGGACAATTACAAGGGCCAGCAAACGCCCTGATCTTAAAGGAACCTTGATACAAACAACTCTCAGAGAGGATTCGACAAGAAACGTCAAATACTACGAACAGGAATTTAAAGTAGAGAGCTCGTCGTTTCGACGTCACAACGTAGCGGTCTGTTTTGTTTATCGGGGCAAGTTATACACACTAAATGCCCAGGCACCTGAATCAGAATGGCCAGGTCTAAAATCAGAGATGAGGACAATTGCCAATTCCTTTTGTCTCTCAGCTTGA

Coding sequence (CDS)

CTTCGCCATTGTTCCTCTTCAAGAGAACAGGCGCGTCGGAAAATGGCGTTTAGTCGCTGCTTCGTCGGCGGTCAAATGATGCATTTCCGGCGGGGAGTAGTATCGGCGCAGTCACCGTCCGAAGACCCCGTCGGAAATTCTGCGGCGGAGCAATTCGCACCGCTGGCAGCGACGTTTCGACGGAGGCTAACTGTAGGGATTGGGTCGGCTTCTCTGGTGGCCGTCGGCGCTAATTTTGGCGGCGTAACGAGCTTTCTGCTCGGATTGTCGCCGGAAAACAGTCGGCGTTTGAGACTCGATGTTGTTTATCCAATTGGAGGGTACAGCCGGTGCATTGATACCAATGAAGGATTTGGTCAAGAACAGGCGCGTCGGAAAATGGCGTTTAGTCGCTGCTTCGTCGGCGGTCAAATGATGCATTTCCGGCGGGGAGTAGTATCGGCGCAGTCACCGTCCGAAGACCCCGTCGGAAATTCTGCGGCGGAGCAATTCGCACCGCTGGCAGCGACGTTTCGACGGAGGCTAACTGTAGGGATTGGGTCGGCTTCTCTGGTGGCCGTCGGCGCTAATTTTGGCGGCGTAACGAGCTTTCTGCTCGGATTGTCGCCGGAAAACAGTCGGCGTTTGAGACTCGATGTTGTTTATCCAATTGGAGGGTACAGCCGGTGCATTGATACCAATGAAGGATTTGAACATCCAGAGTTTATATACCCAGCAAGTTGGGTAGGAGACCAGAGGTTGCTATATCGAGCAGTTGAAAAGTCCGAATTTGAACGATCGCTCGACCCTCCACCCTTGACCAGTTCCAACATGGATCGTCGTCGTCGAAATGTTAATGAGCCTCTGGTTGCATTTGGTCCACCGGGTTCGAGCGGAGAGCTCAACGTTAGCGTCATTGTGTCTCCTGTCTCACCCGATTTTTCAATTGAAGCATTTGGAGGTCCAAATGAAGTAGGGGAAGCTGTGATCAGGACAATTACAAGGGCCAGCAAACGCCCTGATCTTAAAGGAACCTTGATACAAACAACTCTCAGAGAGGATTCGACAAGAAACGTCAAATACTACGAACAGGAATTTAAAGTAGAGAGCTCGTCGTTTCGACGTCACAACGTAGCGGTCTGTTTTGTTTATCGGGGCAAGTTATACACACTAAATGCCCAGGCACCTGAATCAGAATGGCCAGGTCTAAAATCAGAGATGAGGACAATTGCCAATTCCTTTTGTCTCTCAGCTTGA

Protein sequence

LRHCSSSREQARRKMAFSRCFVGGQMMHFRRGVVSAQSPSEDPVGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFGQEQARRKMAFSRCFVGGQMMHFRRGVVSAQSPSEDPVGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQRLLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPDFSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYEQEFKVESSSFRRHNVAVCFVYRGKLYTLNAQAPESEWPGLKSEMRTIANSFCLSA

Homology

[Close]

BLAST of Cp4.1LG07g08940 vs. Swiss-Prot
Match: PPD7_ARATH (PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana GN=PPD7 PE=2 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.9e-96
Identity = 177/260 (68.08%), Postives = 211/260 (81.15%), Query Frame = 1


Query: 148 AQSPSEDPVGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENSR 207
           AQ PS D +  + AE+F+PL   F RRL +G+GS+S++A+GANFGG TSF+LGLSP   R
Sbjct: 25  AQQPSGD-LKTTPAEEFSPLVEKFNRRLLLGVGSSSVLAIGANFGGTTSFILGLSPGIGR 84

Query: 208 RLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQRLLYRAVEKSEFERSLDPPPLT 267
            L+LDV+YPIGGYSRCIDT EGFE   FIYPA+WVGDQ LLYRA EKSE E SLD PP  
Sbjct: 85  NLKLDVIYPIGGYSRCIDTVEGFE---FIYPATWVGDQTLLYRAAEKSERENSLDLPPAR 144

Query: 268 SSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPDFSIEAFGGPNEVGEAVIRTIT 327
           +S    RR+NVNEP+VAFGPPGS+GELNVSVIVSPVSP FSIEAFGGP EVGEA++RT+T
Sbjct: 145 NS----RRKNVNEPVVAFGPPGSTGELNVSVIVSPVSPSFSIEAFGGPKEVGEAIVRTVT 204

Query: 328 RASKRPDLKGTLIQTTLREDSTRNVKYYEQEFKVESSSFRRHNVAVCFVYRGKLYTLNAQ 387
            + +R DLKGTL+++++R+DS RN+KYYE EFKVES  FRRHNVAVC  + G+LYTLNAQ
Sbjct: 205 GSGQRADLKGTLLESSIRQDSERNLKYYELEFKVESPLFRRHNVAVCCAHSGRLYTLNAQ 264

Query: 388 APESEWPGLKSEMRTIANSF 408
           APES W  +KSE+ T A SF
Sbjct: 265 APESAWSEVKSEIYTTAKSF 276

[Close]

BLAST of Cp4.1LG07g08940 vs. Swiss-Prot
Match: PPL1_ARATH (PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-08
Identity = 36/113 (31.86%), Postives = 58/113 (51.33%), Query Frame = 1


Query: 295 NVSVIVSPVSPDFSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKY 354
           +VSV + P S   +I+ FG P ++ E +I+ +      P+ K TLI  +  E       Y
Sbjct: 120 SVSVNLVPTSKQ-TIKEFGPPKQIAETLIKKVLAP---PNQKTTLIDAS--EHDVDGKTY 179

Query: 355 YEQEFKVESSSFRRHNVAVCFVYRGKLYTLNAQAPESEWPGLKSEMRTIANSF 408
           Y+ EF V++ ++ RH +    V+ G  YTL   A E  W  +K  + T+ +SF
Sbjct: 180 YQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSF 226

[Close]

BLAST of Cp4.1LG07g08940 vs. TrEMBL
Match: A0A0A0LGE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030040 PE=4 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 2.4e-129
Identity = 238/285 (83.51%), Postives = 254/285 (89.12%), Query Frame = 1


Query: 127 MAFSRCFVGGQMMHFRRGVVSAQSPSEDPVGNSAAEQFAPLAATFRRRLTVGIGSASLVA 186
           MAFS CF G QM++ RR ++SAQS S+DP G SAAE+FAPLA TFRRRL VGIGSASLVA
Sbjct: 1   MAFSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60

Query: 187 VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR 246
           +GANFGGVTSFLLGLSPENSRRLR+DVVYPIGGYSRCID NEGF   EFIYP+SWVGDQR
Sbjct: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGF---EFIYPSSWVGDQR 120

Query: 247 LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 306
           LLYRA EK E+ERSLDPPPLT S MDRRRRNVNEP+VAFGPPGSSGELNVSVIVSPV  D
Sbjct: 121 LLYRAAEKLEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD 180

Query: 307 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYEQEFKVESSSF 366
           FSIEAFGGPNEVGEAVIRTITRASKR DLKGTLIQTTLRED     KYYE EFKVES++F
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAF 240

Query: 367 RRHNVAVCFVYRGKLYTLNAQAPESEWPGLKSEMRTIANSFCLSA 412
           RRHN+AVC   RGKLYTLNAQAPESEW GLKS+M+TIANSFCLSA
Sbjct: 241 RRHNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA 280

[Close]

BLAST of Cp4.1LG07g08940 vs. TrEMBL
Match: V4TAP0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002020mg PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 1.4e-105
Identity = 193/267 (72.28%), Postives = 225/267 (84.27%), Query Frame = 1


Query: 147 SAQSPSEDPVGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENS 206
           S Q  S  P G S AE+FAPLAA F RRL VG+G+ASLVAVGANFGGVTSFLLGLSPE+ 
Sbjct: 31  SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESG 90

Query: 207 RRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQRLLYRAVEKSEFERSLDPPPL 266
           R L+LDV+YPIGGYSRCID NEGF H EFIYP SWVGDQ LLYRA EKSEFERSLDPPP+
Sbjct: 91  RNLKLDVLYPIGGYSRCIDINEGFGHVEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPI 150

Query: 267 TSS--NMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPDFSIEAFGGPNEVGEAVIR 326
             +  + + RR+N+NEP+VAFGPPGS+GELNVS IVSPV PDFSIEAFGGP EVGEAV+R
Sbjct: 151 NKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSAIVSPVPPDFSIEAFGGPKEVGEAVVR 210

Query: 327 TITRASKRPDLKGTLIQTTLREDSTRNVKYYEQEFKVESSSFRRHNVAVCFVYRGKLYTL 386
           TIT + +RPD+KG+LI++ LREDS R++KYYE EF+VES SF+RHN+AVC    GKLYTL
Sbjct: 211 TITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCARNGKLYTL 270

Query: 387 NAQAPESEWPGLKSEMRTIANSFCLSA 412
           NAQAPES WP +KSE+ T+A+SF L++
Sbjct: 271 NAQAPESVWPEVKSELYTVADSFSLTS 296

[Close]

BLAST of Cp4.1LG07g08940 vs. TrEMBL
Match: A0A067EQY2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022699mg PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 5.9e-104
Identity = 193/267 (72.28%), Postives = 225/267 (84.27%), Query Frame = 1


Query: 147 SAQSPSEDPVGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENS 206
           S Q  S  P G S AE+FAPLAA F RRL VG+G+ASLVAVGANFGGVTSFLLGLSPE+ 
Sbjct: 31  SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESG 90

Query: 207 RRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQRLLYRAVEKSEFERSLDPPPL 266
           R L+LDV+YPIGGYSRCID NEGFE   FIYP SWVGDQ LLYRA EKSEFERSLDPPP+
Sbjct: 91  RNLKLDVLYPIGGYSRCIDINEGFE---FIYPDSWVGDQTLLYRAAEKSEFERSLDPPPI 150

Query: 267 TSS--NMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPDFSIEAFGGPNEVGEAVIR 326
             +  + + RR+N+NEP+VAFGPPGS+GELNVSVIVSPV PDFSIEAFGGP EVGEAV+R
Sbjct: 151 NKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVR 210

Query: 327 TITRASKRPDLKGTLIQTTLREDSTRNVKYYEQEFKVESSSFRRHNVAVCFVYRGKLYTL 386
           TIT + +RPD+KG+LI++ LREDS R++KYYE EF+VES SF+RHN+AVC    GKLYTL
Sbjct: 211 TITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTL 270

Query: 387 NAQAPESEWPGLKSEMRTIANSFCLSA 412
           NAQAPES WP +KSE+ T+A+SF L++
Sbjct: 271 NAQAPESVWPEVKSELYTVADSFSLTS 293

[Close]

BLAST of Cp4.1LG07g08940 vs. TrEMBL
Match: V4T5F4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002020mg PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 1.7e-103
Identity = 192/267 (71.91%), Postives = 224/267 (83.90%), Query Frame = 1


Query: 147 SAQSPSEDPVGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENS 206
           S Q  S  P G S AE+FAPLAA F RRL VG+G+ASLVAVGANFGGVTSFLLGLSPE+ 
Sbjct: 31  SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESG 90

Query: 207 RRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQRLLYRAVEKSEFERSLDPPPL 266
           R L+LDV+YPIGGYSRCID NEGFE   FIYP SWVGDQ LLYRA EKSEFERSLDPPP+
Sbjct: 91  RNLKLDVLYPIGGYSRCIDINEGFE---FIYPDSWVGDQTLLYRAAEKSEFERSLDPPPI 150

Query: 267 TSS--NMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPDFSIEAFGGPNEVGEAVIR 326
             +  + + RR+N+NEP+VAFGPPGS+GELNVS IVSPV PDFSIEAFGGP EVGEAV+R
Sbjct: 151 NKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSAIVSPVPPDFSIEAFGGPKEVGEAVVR 210

Query: 327 TITRASKRPDLKGTLIQTTLREDSTRNVKYYEQEFKVESSSFRRHNVAVCFVYRGKLYTL 386
           TIT + +RPD+KG+LI++ LREDS R++KYYE EF+VES SF+RHN+AVC    GKLYTL
Sbjct: 211 TITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCARNGKLYTL 270

Query: 387 NAQAPESEWPGLKSEMRTIANSFCLSA 412
           NAQAPES WP +KSE+ T+A+SF L++
Sbjct: 271 NAQAPESVWPEVKSELYTVADSFSLTS 293

[Close]

BLAST of Cp4.1LG07g08940 vs. TrEMBL
Match: W9QGT7_9ROSA (PsbP-like protein 1 OS=Morus notabilis GN=L484_013529 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 4.2e-102
Identity = 196/291 (67.35%), Postives = 229/291 (78.69%), Query Frame = 1


Query: 127 MAFSRCFVGGQMMHFRRGVVSAQSP-----SEDPVGNSAAEQFAPLAATFRRRLTVGIGS 186
           MA +RCF   +   F +  ++  S      SE+     AAEQFAPLAATFRRRL VG+GS
Sbjct: 1   MALARCFHACKAPSFHKIRMTQSSGDRKERSEEAASQPAAEQFAPLAATFRRRLLVGLGS 60

Query: 187 ASLVAVGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASW 246
           ASLVAVGANF GVTSFLLGLSPE SR L+LDVVYPI GY+RCIDTNEGFE   FIYPA W
Sbjct: 61  ASLVAVGANFAGVTSFLLGLSPETSRNLKLDVVYPIDGYNRCIDTNEGFE---FIYPARW 120

Query: 247 VGDQRLLYRAVEKSEFERSLDPPPLTSSNMDR-RRRNVNEPLVAFGPPGSSGELNVSVIV 306
           VGDQRLLYRA EK+EFERSLDPPPL ++  +  RR NVNEP+VAFGPPG+SGELNVSVIV
Sbjct: 121 VGDQRLLYRAAEKTEFERSLDPPPLKNAKSNGGRRNNVNEPVVAFGPPGTSGELNVSVIV 180

Query: 307 SPVSPDFSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYEQEFK 366
           SPV  DF IEAFGGP EVGEAV+RTIT +SKRP++KGTL+++T+R+D  RNV YYE EF+
Sbjct: 181 SPVPLDFKIEAFGGPKEVGEAVVRTITGSSKRPEVKGTLVESTMRKDPIRNVNYYELEFR 240

Query: 367 VESSSFRRHNVAVCFVYRGKLYTLNAQAPESEWPGLKSEMRTIANSFCLSA 412
           V+S +FRRHNVAVC    G+L+TLNAQAPES W  +K +   IA SF L++
Sbjct: 241 VDSPTFRRHNVAVCCARSGRLFTLNAQAPESVWQEVKLDFERIAESFSLTS 288

[Close]

BLAST of Cp4.1LG07g08940 vs. TAIR10
Match: AT3G05410.2 (AT3G05410.2 Photosystem II reaction center PsbP family protein)

HSP 1 Score: 353.6 bits (906), Expect = 1.6e-97
Identity = 177/260 (68.08%), Postives = 211/260 (81.15%), Query Frame = 1


Query: 148 AQSPSEDPVGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENSR 207
           AQ PS D +  + AE+F+PL   F RRL +G+GS+S++A+GANFGG TSF+LGLSP   R
Sbjct: 25  AQQPSGD-LKTTPAEEFSPLVEKFNRRLLLGVGSSSVLAIGANFGGTTSFILGLSPGIGR 84

Query: 208 RLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQRLLYRAVEKSEFERSLDPPPLT 267
            L+LDV+YPIGGYSRCIDT EGFE   FIYPA+WVGDQ LLYRA EKSE E SLD PP  
Sbjct: 85  NLKLDVIYPIGGYSRCIDTVEGFE---FIYPATWVGDQTLLYRAAEKSERENSLDLPPAR 144

Query: 268 SSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPDFSIEAFGGPNEVGEAVIRTIT 327
           +S    RR+NVNEP+VAFGPPGS+GELNVSVIVSPVSP FSIEAFGGP EVGEA++RT+T
Sbjct: 145 NS----RRKNVNEPVVAFGPPGSTGELNVSVIVSPVSPSFSIEAFGGPKEVGEAIVRTVT 204

Query: 328 RASKRPDLKGTLIQTTLREDSTRNVKYYEQEFKVESSSFRRHNVAVCFVYRGKLYTLNAQ 387
            + +R DLKGTL+++++R+DS RN+KYYE EFKVES  FRRHNVAVC  + G+LYTLNAQ
Sbjct: 205 GSGQRADLKGTLLESSIRQDSERNLKYYELEFKVESPLFRRHNVAVCCAHSGRLYTLNAQ 264

Query: 388 APESEWPGLKSEMRTIANSF 408
           APES W  +KSE+ T A SF
Sbjct: 265 APESAWSEVKSEIYTTAKSF 276

[Close]

BLAST of Cp4.1LG07g08940 vs. TAIR10
Match: AT3G55330.1 (AT3G55330.1 PsbP-like protein 1)

HSP 1 Score: 62.4 bits (150), Expect = 7.6e-10
Identity = 36/113 (31.86%), Postives = 58/113 (51.33%), Query Frame = 1


Query: 295 NVSVIVSPVSPDFSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKY 354
           +VSV + P S   +I+ FG P ++ E +I+ +      P+ K TLI  +  E       Y
Sbjct: 120 SVSVNLVPTSKQ-TIKEFGPPKQIAETLIKKVLAP---PNQKTTLIDAS--EHDVDGKTY 179

Query: 355 YEQEFKVESSSFRRHNVAVCFVYRGKLYTLNAQAPESEWPGLKSEMRTIANSF 408
           Y+ EF V++ ++ RH +    V+ G  YTL   A E  W  +K  + T+ +SF
Sbjct: 180 YQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSF 226

[Close]

BLAST of Cp4.1LG07g08940 vs. NCBI nr
Match: gi|659070290|ref|XP_008454371.1| (PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 483.8 bits (1244), Expect = 3.0e-133
Identity = 240/285 (84.21%), Postives = 258/285 (90.53%), Query Frame = 1


Query: 127 MAFSRCFVGGQMMHFRRGVVSAQSPSEDPVGNSAAEQFAPLAATFRRRLTVGIGSASLVA 186
           MAFSRC  G QM++FRR ++ AQS S+DP G SAAE+FAPLAATFRRRL VGIGSASLVA
Sbjct: 1   MAFSRCLSGSQMINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVA 60

Query: 187 VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR 246
           VGANF GVTSFLLGLSPENSRRLR+DVVYPIGGY+RC D NEGFEHPEFIYP+SWVGDQR
Sbjct: 61  VGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGFEHPEFIYPSSWVGDQR 120

Query: 247 LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 306
           LLYR  EKSE+ERSLDPPPLT+S MDRRRRNVNEPLVAFGPPGSSGELNVSVIVS V PD
Sbjct: 121 LLYREAEKSEYERSLDPPPLTNSTMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSSVPPD 180

Query: 307 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYEQEFKVESSSF 366
           FSIEAFGGPNEVGEAVIRTITRASKR DLKGTLIQTTLRED     KYYE EFKVES++F
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAF 240

Query: 367 RRHNVAVCFVYRGKLYTLNAQAPESEWPGLKSEMRTIANSFCLSA 412
           +RHN+AVC   RGKLYTLNAQAPESEWPGLKS+M+TIA+SFCLSA
Sbjct: 241 QRHNIAVCCARRGKLYTLNAQAPESEWPGLKSKMKTIASSFCLSA 283

[Close]

BLAST of Cp4.1LG07g08940 vs. NCBI nr
Match: gi|449454159|ref|XP_004144823.1| (PREDICTED: psbP domain-containing protein 7, chloroplastic [Cucumis sativus])

HSP 1 Score: 470.3 bits (1209), Expect = 3.4e-129
Identity = 238/285 (83.51%), Postives = 254/285 (89.12%), Query Frame = 1


Query: 127 MAFSRCFVGGQMMHFRRGVVSAQSPSEDPVGNSAAEQFAPLAATFRRRLTVGIGSASLVA 186
           MAFS CF G QM++ RR ++SAQS S+DP G SAAE+FAPLA TFRRRL VGIGSASLVA
Sbjct: 1   MAFSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60

Query: 187 VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR 246
           +GANFGGVTSFLLGLSPENSRRLR+DVVYPIGGYSRCID NEGF   EFIYP+SWVGDQR
Sbjct: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGF---EFIYPSSWVGDQR 120

Query: 247 LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 306
           LLYRA EK E+ERSLDPPPLT S MDRRRRNVNEP+VAFGPPGSSGELNVSVIVSPV  D
Sbjct: 121 LLYRAAEKLEYERSLDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLD 180

Query: 307 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYEQEFKVESSSF 366
           FSIEAFGGPNEVGEAVIRTITRASKR DLKGTLIQTTLRED     KYYE EFKVES++F
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAF 240

Query: 367 RRHNVAVCFVYRGKLYTLNAQAPESEWPGLKSEMRTIANSFCLSA 412
           RRHN+AVC   RGKLYTLNAQAPESEW GLKS+M+TIANSFCLSA
Sbjct: 241 RRHNIAVCCARRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA 280

[Close]

BLAST of Cp4.1LG07g08940 vs. NCBI nr
Match: gi|659070292|ref|XP_008454379.1| (PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 470.3 bits (1209), Expect = 3.4e-129
Identity = 237/285 (83.16%), Postives = 255/285 (89.47%), Query Frame = 1


Query: 127 MAFSRCFVGGQMMHFRRGVVSAQSPSEDPVGNSAAEQFAPLAATFRRRLTVGIGSASLVA 186
           MAFSRC  G QM++FRR ++ AQS S+DP G SAAE+FAPLAATFRRRL VGIGSASLVA
Sbjct: 1   MAFSRCLSGSQMINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVA 60

Query: 187 VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQR 246
           VGANF GVTSFLLGLSPENSRRLR+DVVYPIGGY+RC D NEGF   EFIYP+SWVGDQR
Sbjct: 61  VGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGF---EFIYPSSWVGDQR 120

Query: 247 LLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPD 306
           LLYR  EKSE+ERSLDPPPLT+S MDRRRRNVNEPLVAFGPPGSSGELNVSVIVS V PD
Sbjct: 121 LLYREAEKSEYERSLDPPPLTNSTMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSSVPPD 180

Query: 307 FSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYEQEFKVESSSF 366
           FSIEAFGGPNEVGEAVIRTITRASKR DLKGTLIQTTLRED     KYYE EFKVES++F
Sbjct: 181 FSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAF 240

Query: 367 RRHNVAVCFVYRGKLYTLNAQAPESEWPGLKSEMRTIANSFCLSA 412
           +RHN+AVC   RGKLYTLNAQAPESEWPGLKS+M+TIA+SFCLSA
Sbjct: 241 QRHNIAVCCARRGKLYTLNAQAPESEWPGLKSKMKTIASSFCLSA 280

[Close]

BLAST of Cp4.1LG07g08940 vs. NCBI nr
Match: gi|567881665|ref|XP_006433391.1| (hypothetical protein CICLE_v10002020mg [Citrus clementina])

HSP 1 Score: 391.3 bits (1004), Expect = 2.0e-105
Identity = 193/267 (72.28%), Postives = 225/267 (84.27%), Query Frame = 1


Query: 147 SAQSPSEDPVGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENS 206
           S Q  S  P G S AE+FAPLAA F RRL VG+G+ASLVAVGANFGGVTSFLLGLSPE+ 
Sbjct: 31  SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESG 90

Query: 207 RRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQRLLYRAVEKSEFERSLDPPPL 266
           R L+LDV+YPIGGYSRCID NEGF H EFIYP SWVGDQ LLYRA EKSEFERSLDPPP+
Sbjct: 91  RNLKLDVLYPIGGYSRCIDINEGFGHVEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPI 150

Query: 267 TSS--NMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPDFSIEAFGGPNEVGEAVIR 326
             +  + + RR+N+NEP+VAFGPPGS+GELNVS IVSPV PDFSIEAFGGP EVGEAV+R
Sbjct: 151 NKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSAIVSPVPPDFSIEAFGGPKEVGEAVVR 210

Query: 327 TITRASKRPDLKGTLIQTTLREDSTRNVKYYEQEFKVESSSFRRHNVAVCFVYRGKLYTL 386
           TIT + +RPD+KG+LI++ LREDS R++KYYE EF+VES SF+RHN+AVC    GKLYTL
Sbjct: 211 TITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCARNGKLYTL 270

Query: 387 NAQAPESEWPGLKSEMRTIANSFCLSA 412
           NAQAPES WP +KSE+ T+A+SF L++
Sbjct: 271 NAQAPESVWPEVKSELYTVADSFSLTS 296

[Close]

BLAST of Cp4.1LG07g08940 vs. NCBI nr
Match: gi|641837315|gb|KDO56270.1| (hypothetical protein CISIN_1g022699mg [Citrus sinensis])

HSP 1 Score: 386.0 bits (990), Expect = 8.5e-104
Identity = 193/267 (72.28%), Postives = 225/267 (84.27%), Query Frame = 1


Query: 147 SAQSPSEDPVGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENS 206
           S Q  S  P G S AE+FAPLAA F RRL VG+G+ASLVAVGANFGGVTSFLLGLSPE+ 
Sbjct: 31  SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESG 90

Query: 207 RRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQRLLYRAVEKSEFERSLDPPPL 266
           R L+LDV+YPIGGYSRCID NEGFE   FIYP SWVGDQ LLYRA EKSEFERSLDPPP+
Sbjct: 91  RNLKLDVLYPIGGYSRCIDINEGFE---FIYPDSWVGDQTLLYRAAEKSEFERSLDPPPI 150

Query: 267 TSS--NMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPDFSIEAFGGPNEVGEAVIR 326
             +  + + RR+N+NEP+VAFGPPGS+GELNVSVIVSPV PDFSIEAFGGP EVGEAV+R
Sbjct: 151 NKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVR 210

Query: 327 TITRASKRPDLKGTLIQTTLREDSTRNVKYYEQEFKVESSSFRRHNVAVCFVYRGKLYTL 386
           TIT + +RPD+KG+LI++ LREDS R++KYYE EF+VES SF+RHN+AVC    GKLYTL
Sbjct: 211 TITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTL 270

Query: 387 NAQAPESEWPGLKSEMRTIANSFCLSA 412
           NAQAPES WP +KSE+ T+A+SF L++
Sbjct: 271 NAQAPESVWPEVKSELYTVADSFSLTS 293

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g08940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPD7_ARATH	2.9e-96	68.08	PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana GN=PPD7 ...	[more]
PPL1_ARATH	1.3e-08	31.86	PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1	[more]

BLAST of Cp4.1LG07g08940 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGE5_CUCSA	2.4e-129	83.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030040 PE=4 SV=1	[more]
V4TAP0_9ROSI	1.4e-105	72.28	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002020mg PE=4 SV=1	[more]
A0A067EQY2_CITSI	5.9e-104	72.28	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022699mg PE=4 SV=1	[more]
V4T5F4_9ROSI	1.7e-103	71.91	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002020mg PE=4 SV=1	[more]
W9QGT7_9ROSA	4.2e-102	67.35	PsbP-like protein 1 OS=Morus notabilis GN=L484_013529 PE=4 SV=1	[more]

BLAST of Cp4.1LG07g08940 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05410.2	1.6e-97	68.08	Photosystem II reaction center PsbP family protein	[more]
AT3G55330.1	7.6e-10	31.86	PsbP-like protein 1	[more]

BLAST of Cp4.1LG07g08940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070290\|ref\|XP_008454371.1\|	3.0e-133	84.21	PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis m...	[more]
gi\|449454159\|ref\|XP_004144823.1\|	3.4e-129	83.51	PREDICTED: psbP domain-containing protein 7, chloroplastic [Cucumis sativus]	[more]
gi\|659070292\|ref\|XP_008454379.1\|	3.4e-129	83.16	PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X2 [Cucumis m...	[more]
gi\|567881665\|ref\|XP_006433391.1\|	2.0e-105	72.28	hypothetical protein CICLE_v10002020mg [Citrus clementina]	[more]
gi\|641837315\|gb\|KDO56270.1\|	8.5e-104	72.28	hypothetical protein CISIN_1g022699mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0019898	extrinsic component of membrane
GO:0009654	photosystem II oxygen evolving complex
GO:0009523	photosystem II

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016123	Mog1/PsbP_a/b/a-sand
IPR002683	PsbP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g08940.1	Cp4.1LG07g08940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 283..407 score: 1.4
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	G3DSA:3.40.1000.10		coord: 217..408 score: 2.2
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	unknown	SSF55724	Mog1p/PsbP-like	coord: 222..242 score: 1.26E-24coord: 272..407 score: 1.26
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 159..407 score: 4.4E
None	No IPR available	PANTHER	PTHR31407:SF16	PSBP DOMAIN-CONTAINING PROTEIN 7, CHLOROPLASTIC	coord: 159..407 score: 4.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG07g08940	Cucsa.091200	Cucumber (Gy14) v1	cgycpeB0177
Cp4.1LG07g08940	CmaCh12G010680	Cucurbita maxima (Rimu)	cmacpeB203
Cp4.1LG07g08940	CmoCh12G010820	Cucurbita moschata (Rifu)	cmocpeB175
Cp4.1LG07g08940	Cla019913	Watermelon (97103) v1	cpewmB806
Cp4.1LG07g08940	Csa2G030040	Cucumber (Chinese Long) v2	cpecuB820
Cp4.1LG07g08940	ClCG02G015570	Watermelon (Charleston Gray)	cpewcgB733
Cp4.1LG07g08940	CSPI02G04180	Wild cucumber (PI 183967)	cpecpiB821
Cp4.1LG07g08940	Lsi11G005770	Bottle gourd (USVL1VR-Ls)	cpelsiB659
Cp4.1LG07g08940	MELO3C004233.2	Melon (DHL92) v3.6.1	cpemedB907
Cp4.1LG07g08940	CsaV3_2G006520	Cucumber (Chinese Long) v3	cpecucB1014
Cp4.1LG07g08940	Bhi06G001279	Wax gourd	cpewgoB1015
Cp4.1LG07g08940	CsGy2G004300	Cucumber (Gy14) v2	cgybcpeB271
Cp4.1LG07g08940	Carg17538	Silver-seed gourd	carcpeB1006

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG07g08940	Cucumber (Chinese Long) v3	cpecucB0998
Cp4.1LG07g08940	Wax gourd	cpewgoB1072
Cp4.1LG07g08940	Cucurbita pepo (Zucchini)	cpecpeB139
Cp4.1LG07g08940	Cucurbita maxima (Rimu)	cmacpeB789
Cp4.1LG07g08940	Cucurbita moschata (Rifu)	cmocpeB742
Cp4.1LG07g08940	Melon (DHL92) v3.5.1	cpemeB771
Cp4.1LG07g08940	Cucumber (Gy14) v2	cgybcpeB143
Cp4.1LG07g08940	Melon (DHL92) v3.6.1	cpemedB885