Csa6G499860 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G499860
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 24856075 .. 24856485 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAATCACCAAATTAATTAACTACTTATATCTATCATGTCATCGGTGTCTTTGGAAGCTTTCGCAATGGCCGGAATGGAGTACTCCGGCGAGTGGGGGATAGATGTTGAGGAATGGGAAAGCCAGGACTTGGATTACTGCCCTCCGCCGTATCTTCTGGCGGAAGGACGAGTTAACGACAACGACAAAGCGTCCGATGAACAACCTCCAAGTCTTTCTGAGCCTCCGTCGCAGGCTTGCCGTTCATGTTGATGATATATATATATATATATGCTACCTTTAATTTTACCATAACTGATCATCTCCCAGTTTTTCTTCTTCTTTAAATTTAGATCTTGCATTCAACCACGAACAACCCCATGGAAGGAGGTTTAGATTTTGAATATAATATATAAATATATATTGTAATCT

mRNA sequence

ATGTCATCGGTGTCTTTGGAAGCTTTCGCAATGGCCGGAATGGAGTACTCCGGCGAGTGGGGGATAGATGTTGAGGAATGGGAAAGCCAGGACTTGGATTACTGCCCTCCGCCGTATCTTCTGGCGGAAGGACGAGTTAACGACAACGACAAAGCGTCCGATGAACAACCTCCAAGTCTTTCTGAGCCTCCGTCGCAGGCTTGCCGTTCATGTTGA

Coding sequence (CDS)

ATGTCATCGGTGTCTTTGGAAGCTTTCGCAATGGCCGGAATGGAGTACTCCGGCGAGTGGGGGATAGATGTTGAGGAATGGGAAAGCCAGGACTTGGATTACTGCCCTCCGCCGTATCTTCTGGCGGAAGGACGAGTTAACGACAACGACAAAGCGTCCGATGAACAACCTCCAAGTCTTTCTGAGCCTCCGTCGCAGGCTTGCCGTTCATGTTGA

Protein sequence

MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSLSEPPSQACRSC*
Homology
[Close]
BLAST of Csa6G499860 vs. TrEMBL
Match: A0A0A0KK23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499860 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 8.6e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL 60
          MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL 60

Query: 61 SEPPSQACRSC 72
          SEPPSQACRSC
Sbjct: 61 SEPPSQACRSC 71

[Close]
BLAST of Csa6G499860 vs. TrEMBL
Match: A0A0D2P3G6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G185100 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.6e-07
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 

Query: 3  SVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAE 44
          +VS+EA AMAG++Y+ EWG+D+E+WE  D  +CPPP+LLAE
Sbjct: 2  TVSIEALAMAGVDYN-EWGLDIEKWEDDDDSHCPPPHLLAE 41

[Close]
BLAST of Csa6G499860 vs. TrEMBL
Match: A0A0D2QES3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G039700 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.4e-06
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1 

Query: 3  SVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDE 56
          SVS+EA AMAG++Y  EWG+DVEEWE    D  PPP+LLA+G   DN++  +E
Sbjct: 2  SVSIEALAMAGVDYM-EWGMDVEEWEHD--DELPPPHLLADG---DNEEEKEE 48

[Close]
BLAST of Csa6G499860 vs. NCBI nr
Match: gi|700193538|gb|KGN48742.1| (hypothetical protein Csa_6G499860 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL 60
          MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL 60

Query: 61 SEPPSQACRSC 72
          SEPPSQACRSC
Sbjct: 61 SEPPSQACRSC 71

[Close]
BLAST of Csa6G499860 vs. NCBI nr
Match: gi|659080058|ref|XP_008440588.1| (PREDICTED: uncharacterized protein LOC103484965 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 4.1e-30
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 1 

Query: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDN---DKASDEQP 60
          MSSVSLEAFAMAGMEYSGEWGIDVE+WESQDLDYCPPPYLLAEGRVNDN   DKASD+Q 
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQR 60

Query: 61 PSLSEPPSQACRS 71
          PSLSEPPSQACRS
Sbjct: 61 PSLSEPPSQACRS 73

[Close]
BLAST of Csa6G499860 vs. NCBI nr
Match: gi|763753760|gb|KJB21148.1| (hypothetical protein B456_003G185100 [Gossypium raimondii])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 

Query: 3  SVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAE 44
          +VS+EA AMAG++Y+ EWG+D+E+WE  D  +CPPP+LLAE
Sbjct: 2  TVSIEALAMAGVDYN-EWGLDIEKWEDDDDSHCPPPHLLAE 41

The following BLAST results are available for this feature:
BLAST of Csa6G499860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK23_CUCSA8.6e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499860 PE=4 SV=1[more]
A0A0D2P3G6_GOSRA7.6e-0760.98Uncharacterized protein OS=Gossypium raimondii GN=B456_003G185100 PE=4 SV=1[more]
A0A0D2QES3_GOSRA8.4e-0656.60Uncharacterized protein OS=Gossypium raimondii GN=B456_003G039700 PE=4 SV=1[more]
BLAST of Csa6G499860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193538|gb|KGN48742.1|1.2e-34100.00hypothetical protein Csa_6G499860 [Cucumis sativus][more]
gi|659080058|ref|XP_008440588.1|4.1e-3091.78PREDICTED: uncharacterized protein LOC103484965 [Cucumis melo][more]
gi|763753760|gb|KJB21148.1|1.1e-0660.98hypothetical protein B456_003G185100 [Gossypium raimondii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU093340cucumber EST collection version 3.0transcribed_cluster
CU121845cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G499860.1Csa6G499860.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU121845CU121845transcribed_cluster
CU093340CU093340transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G499860MELO3C007751Melon (DHL92) v3.5.1cumeB503
Csa6G499860ClCG01G018710Watermelon (Charleston Gray)cuwcgB432
Csa6G499860MELO3C007751.2Melon (DHL92) v3.6.1cumedB483
Csa6G499860Cla97C01G018110Watermelon (97103) v2cuwmbB412
Csa6G499860Bhi03G000897Wax gourdcuwgoB620
Csa6G499860CSPI06G30170Wild cucumber (PI 183967)cpicuB313
Csa6G499860CmoCh03G008510Cucurbita moschata (Rifu)cmocuB670
Csa6G499860Cp4.1LG10g01140Cucurbita pepo (Zucchini)cpecuB085
Csa6G499860CsGy6G029650Cucumber (Gy14) v2cgybcuB281
Csa6G499860Carg00700Silver-seed gourdcarcuB0441
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G499860Melon (DHL92) v3.6.1cumedB453
Csa6G499860Silver-seed gourdcarcuB0063
Csa6G499860Silver-seed gourdcarcuB0672
Csa6G499860Silver-seed gourdcarcuB0776
Csa6G499860Silver-seed gourdcarcuB0959
Csa6G499860Watermelon (97103) v2cuwmbB502
Csa6G499860Wax gourdcuwgoB593
Csa6G499860Cucumber (Chinese Long) v2cucuB073
Csa6G499860Cucumber (Gy14) v1cgycuB121
Csa6G499860Cucumber (Gy14) v1cgycuB242
Csa6G499860Cucurbita maxima (Rimu)cmacuB199
Csa6G499860Cucurbita maxima (Rimu)cmacuB681
Csa6G499860Cucurbita maxima (Rimu)cmacuB810
Csa6G499860Cucurbita maxima (Rimu)cmacuB877
Csa6G499860Cucurbita moschata (Rifu)cmocuB184
Csa6G499860Cucurbita moschata (Rifu)cmocuB768
Csa6G499860Cucurbita moschata (Rifu)cmocuB799
Csa6G499860Cucurbita moschata (Rifu)cmocuB865
Csa6G499860Melon (DHL92) v3.5.1cumeB471
Csa6G499860Watermelon (Charleston Gray)cuwcgB511
Csa6G499860Watermelon (97103) v1cuwmB472
Csa6G499860Watermelon (97103) v1cuwmB500
Csa6G499860Cucurbita pepo (Zucchini)cpecuB123
Csa6G499860Cucurbita pepo (Zucchini)cpecuB469
Csa6G499860Cucurbita pepo (Zucchini)cpecuB503
Csa6G499860Cucurbita pepo (Zucchini)cpecuB845
Csa6G499860Bottle gourd (USVL1VR-Ls)culsiB434
Csa6G499860Bottle gourd (USVL1VR-Ls)culsiB483
Csa6G499860Cucumber (Gy14) v2cgybcuB081