Csa5G611640 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G611640
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 23909871 .. 23910425 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCATGGTACAAAATGGCATCCGCTCCTCTCCCCTCGTTCCATTATTTCCACACTCCGTCTTCTCTGCGGCGAAGGCCATTATCCGACCACCGCAGTGCTCCGAGATGCCACGGCAGGGCCGGCGATGAAGGTACGTACGTCCTCAGCCTGCACCCGCAGTACTACTCTATCTCTGTAATATCAACGATCTTCATCTCTTTAACTACTTCTTAAACACAAAATCTTTTTTCTATGTATGTGCTGCAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGAGGGATTCCGATTCAGATACGGCAGCGAGGAATGGAAGAATTGGATGATGGCGGGAGGTATTTGTGGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAGATGAAAAATTGTGGGCTGATTTCAGGGTGCTTGGAGGTGGTGAGTAGGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGCATCTGCTTCGTTTCTTTTATTGTTCGTCATTTTTGGTAA

mRNA sequence

ATGGCATCCGCTCCTCTCCCCTCGTTCCATTATTTCCACACTCCGTCTTCTCTGCGGCGAAGGCCATTATCCGACCACCGCAGTGCTCCGAGATGCCACGGCAGGGCCGGCGATGAAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGAGGGATTCCGATTCAGATACGGCAGCGAGGAATGGAAGAATTGGATGATGGCGGGAGGTATTTGTGGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAGATGAAAAATTGTGGGCTGATTTCAGGGTGCTTGGAGGTGGTGAGTAGGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGCATCTGCTTCGTTTCTTTTATTGTTCGTCATTTTTGGTAA

Coding sequence (CDS)

ATGGCATCCGCTCCTCTCCCCTCGTTCCATTATTTCCACACTCCGTCTTCTCTGCGGCGAAGGCCATTATCCGACCACCGCAGTGCTCCGAGATGCCACGGCAGGGCCGGCGATGAAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGAGGGATTCCGATTCAGATACGGCAGCGAGGAATGGAAGAATTGGATGATGGCGGGAGGTATTTGTGGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAGATGAAAAATTGTGGGCTGATTTCAGGGTGCTTGGAGGTGGTGAGTAGGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGCATCTGCTTCGTTTCTTTTATTGTTCGTCATTTTTGGTAA

Protein sequence

MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLRKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVGLVFVGGSLGICFVSFIVRHFW*

Homology

[Close]

BLAST of Csa5G611640 vs. TrEMBL
Match: A0A0A0KRA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611640 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.1e-77
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1


Query: 1   MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60
           MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL
Sbjct: 1   MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG 120
           RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG
Sbjct: 61  RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG 120

Query: 121 LVFVGGSLGICFVSFIVRHFW 142
           LVFVGGSLGICFVSFIVRHFW
Sbjct: 121 LVFVGGSLGICFVSFIVRHFW 141

[Close]

BLAST of Csa5G611640 vs. NCBI nr
Match: gi|778706164|ref|XP_011655810.1| (PREDICTED: uncharacterized protein LOC105435587 [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 3.0e-77
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1


Query: 1   MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60
           MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL
Sbjct: 1   MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG 120
           RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG
Sbjct: 61  RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG 120

Query: 121 LVFVGGSLGICFVSFIVRHFW 142
           LVFVGGSLGICFVSFIVRHFW
Sbjct: 121 LVFVGGSLGICFVSFIVRHFW 141

[Close]

BLAST of Csa5G611640 vs. NCBI nr
Match: gi|659091702|ref|XP_008446686.1| (PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58
Identity = 122/143 (85.31%), Postives = 125/143 (87.41%), Query Frame = 1


Query: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLR 61
           +SA LPSFHYFH PSS +RRP SDH SAPRCH RAGDEENEKDIVEANLTVLRTRMEDLR
Sbjct: 3   SSAGLPSFHYFHPPSSRQRRP-SDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLR 62

Query: 62  KKERGIPIQI--RQRGMEELDDGGRYLW-KLDGGCFDGKKMKNCGLISGCLEVVSRVGGA 121
           KKER IPI I  RQRGMEE DDG RYL  KLDGGCFDGKK+KN  LISGCLEVVS VGGA
Sbjct: 63  KKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGA 122

Query: 122 VGLVFVGGSLGICFVSFIVRHFW 142
           VGLVFVGGSLGIC VSFIVRHFW
Sbjct: 123 VGLVFVGGSLGICLVSFIVRHFW 144

The following BLAST results are available for this feature:

BLAST of Csa5G611640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRA6_CUCSA	2.1e-77	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611640 PE=4 SV=1	[more]

BLAST of Csa5G611640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778706164\|ref\|XP_011655810.1\|	3.0e-77	100.00	PREDICTED: uncharacterized protein LOC105435587 [Cucumis sativus]	[more]
gi\|659091702\|ref\|XP_008446686.1\|	1.4e-58	85.31	PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G611640.1	Csa5G611640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 43..63 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G611640	Cla020440	Watermelon (97103) v1	cuwmB401
Csa5G611640	MELO3C012296	Melon (DHL92) v3.5.1	cumeB377
Csa5G611640	ClCG05G022270	Watermelon (Charleston Gray)	cuwcgB394
Csa5G611640	MELO3C012296.2	Melon (DHL92) v3.6.1	cumedB359
Csa5G611640	Cla97C05G104040	Watermelon (97103) v2	cuwmbB383
Csa5G611640	Bhi07G001045	Wax gourd	cuwgoB512
Csa5G611640	CSPI05G25780	Wild cucumber (PI 183967)	cpicuB239
Csa5G611640	CmaCh04G014690	Cucurbita maxima (Rimu)	cmacuB748
Csa5G611640	Cp4.1LG01g14050	Cucurbita pepo (Zucchini)	cpecuB439
Csa5G611640	CsGy5G025210	Cucumber (Gy14) v2	cgybcuB223
Csa5G611640	Carg01871	Silver-seed gourd	carcuB0857

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G611640	Watermelon (97103) v2	cuwmbB341
Csa5G611640	Wax gourd	cuwgoB447
Csa5G611640	Wax gourd	cuwgoB501
Csa5G611640	Cucumber (Chinese Long) v2	cucuB160
Csa5G611640	Cucumber (Gy14) v1	cgycuB399
Csa5G611640	Cucumber (Gy14) v1	cgycuB410
Csa5G611640	Cucurbita maxima (Rimu)	cmacuB295
Csa5G611640	Cucurbita maxima (Rimu)	cmacuB417
Csa5G611640	Cucurbita maxima (Rimu)	cmacuB735
Csa5G611640	Cucurbita moschata (Rifu)	cmocuB282
Csa5G611640	Cucurbita moschata (Rifu)	cmocuB406
Csa5G611640	Cucurbita moschata (Rifu)	cmocuB738
Csa5G611640	Cucurbita moschata (Rifu)	cmocuB724
Csa5G611640	Melon (DHL92) v3.5.1	cumeB367
Csa5G611640	Watermelon (Charleston Gray)	cuwcgB369
Csa5G611640	Watermelon (97103) v1	cuwmB414
Csa5G611640	Cucurbita pepo (Zucchini)	cpecuB041
Csa5G611640	Cucurbita pepo (Zucchini)	cpecuB190
Csa5G611640	Bottle gourd (USVL1VR-Ls)	culsiB328
Csa5G611640	Bottle gourd (USVL1VR-Ls)	culsiB368
Csa5G611640	Cucumber (Gy14) v2	cgybcuB233
Csa5G611640	Melon (DHL92) v3.6.1	cumedB345
Csa5G611640	Silver-seed gourd	carcuB1066