MELO3C012296 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012296
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
Location	chr10 : 1398527 .. 1399065 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCCGCTGGTCTCCCTTCGTTCCATTATTTCCACCCTCCGTCTTCTCGGCAGCGAAGACCATCCGACCACTGCAGTGCTCCAAGATGCCACAGCAGGGCCGGCGATGAAGGTCCTCAACCACACGCACTACTCTATCTCTGTAATATCGACGATCTTCATCTCTTTAATTACTTCTTAAACACAAAATCTTTTTTTTCTATACATGTGCTGCAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGACGGATTCCGATTCCGATTCCGATACGGCAGCGAGGAATGGAAGAATTTGATGATGGCCGGAGGTATTTGTCGTCGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAATTGAAAAATGGTGCCCTGATTTCAGGGTGTTTGGAGGTGGTGAGTACGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTTTTATAGTCCGTCATTTTTGGTGA

mRNA sequence

ATGGCTTCCTCCGCTGGTCTCCCTTCGTTCCATTATTTCCACCCTCCGTCTTCTCGGCAGCGAAGACCATCCGACCACTGCAGTGCTCCAAGATGCCACAGCAGGGCCGGCGATGAAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGACGGATTCCGATTCCGATTCCGATACGGCAGCGAGGAATGGAAGAATTTGATGATGGCCGGAGGTATTTGTCGTCGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAATTGAAAAATGGTGCCCTGATTTCAGGGTGTTTGGAGGTGGTGAGTACGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTTTTATAGTCCGTCATTTTTGGTGA

Coding sequence (CDS)

ATGGCTTCCTCCGCTGGTCTCCCTTCGTTCCATTATTTCCACCCTCCGTCTTCTCGGCAGCGAAGACCATCCGACCACTGCAGTGCTCCAAGATGCCACAGCAGGGCCGGCGATGAAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGACGGATTCCGATTCCGATTCCGATACGGCAGCGAGGAATGGAAGAATTTGATGATGGCCGGAGGTATTTGTCGTCGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAATTGAAAAATGGTGCCCTGATTTCAGGGTGTTTGGAGGTGGTGAGTACGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTTTTATAGTCCGTCATTTTTGGTGA

Protein sequence

MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGAVGLVFVGGSLGICLVSFIVRHFW*

Homology

[Close]

BLAST of MELO3C012296 vs. TrEMBL
Match: A0A0A0KRA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611640 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-58
Identity = 122/143 (85.31%), Postives = 125/143 (87.41%), Query Frame = 1


Query: 3   SSAGLPSFHYFHPPSSRQRRP-SDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLR 62
           +SA LPSFHYFH PSS +RRP SDH SAPRCH RAGDEENEKDIVEANLTVLRTRMEDLR
Sbjct: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLR 61

Query: 63  KKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGA 122
           KKER IPI I  RQRGMEE DDG RYL  KLDGGCFDGKK+KN  LISGCLEVVS VGGA
Sbjct: 62  KKERGIPIQI--RQRGMEELDDGGRYLW-KLDGGCFDGKKMKNCGLISGCLEVVSRVGGA 121

Query: 123 VGLVFVGGSLGICLVSFIVRHFW 145
           VGLVFVGGSLGIC VSFIVRHFW
Sbjct: 122 VGLVFVGGSLGICFVSFIVRHFW 141

[Close]

BLAST of MELO3C012296 vs. NCBI nr
Match: gi|659091702|ref|XP_008446686.1| (PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 6.3e-78
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1


Query: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60
           MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL
Sbjct: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120
           RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG
Sbjct: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120

Query: 121 AVGLVFVGGSLGICLVSFIVRHFW 145
           AVGLVFVGGSLGICLVSFIVRHFW
Sbjct: 121 AVGLVFVGGSLGICLVSFIVRHFW 144

[Close]

BLAST of MELO3C012296 vs. NCBI nr
Match: gi|778706164|ref|XP_011655810.1| (PREDICTED: uncharacterized protein LOC105435587 [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-58
Identity = 122/143 (85.31%), Postives = 125/143 (87.41%), Query Frame = 1


Query: 3   SSAGLPSFHYFHPPSSRQRRP-SDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLR 62
           +SA LPSFHYFH PSS +RRP SDH SAPRCH RAGDEENEKDIVEANLTVLRTRMEDLR
Sbjct: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLR 61

Query: 63  KKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGA 122
           KKER IPI I  RQRGMEE DDG RYL  KLDGGCFDGKK+KN  LISGCLEVVS VGGA
Sbjct: 62  KKERGIPIQI--RQRGMEELDDGGRYLW-KLDGGCFDGKKMKNCGLISGCLEVVSRVGGA 121

Query: 123 VGLVFVGGSLGICLVSFIVRHFW 145
           VGLVFVGGSLGIC VSFIVRHFW
Sbjct: 122 VGLVFVGGSLGICFVSFIVRHFW 141

[Close]

BLAST of MELO3C012296 vs. NCBI nr
Match: gi|731369855|ref|XP_010660511.1| (PREDICTED: uncharacterized protein LOC104881607 [Vitis vinifera])

HSP 1 Score: 58.9 bits (141), Expect = 8.4e-06
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 1


Query: 38  DEENEKDIVEANLTVLRTRMEDLRKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCF 97
           DE    +IV+ANL +LR R+E+++KKER     +           +G  Y +       +
Sbjct: 33  DEGKSANIVDANLRILRERIEEVKKKERLNTCSL----------QNGWTYQAG------Y 92

Query: 98  DGKKLKNGALISGCLEVVSTVGGAVGLVFVGGSLGICLVSFIV 141
           D K  K  A++S  ++++ TV GA+GLVF  GS  ICLVS +V
Sbjct: 93  DHKH-KRAAILSESIQLIGTVSGALGLVFFSGSFLICLVSILV 118

The following BLAST results are available for this feature:

BLAST of MELO3C012296 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRA6_CUCSA	1.0e-58	85.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611640 PE=4 SV=1	[more]

BLAST of MELO3C012296 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091702\|ref\|XP_008446686.1\|	6.3e-78	100.00	PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo]	[more]
gi\|778706164\|ref\|XP_011655810.1\|	1.5e-58	85.31	PREDICTED: uncharacterized protein LOC105435587 [Cucumis sativus]	[more]
gi\|731369855\|ref\|XP_010660511.1\|	8.4e-06	36.89	PREDICTED: uncharacterized protein LOC104881607 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012296T1	MELO3C012296T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 43..63 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C012296	Csa5G611640	Cucumber (Chinese Long) v2	cumeB377
MELO3C012296	Cla020440	Watermelon (97103) v1	mewmB061
MELO3C012296	ClCG05G022270	Watermelon (Charleston Gray)	mewcgB062
MELO3C012296	Cla97C05G104040	Watermelon (97103) v2	mewmbB060
MELO3C012296	Bhi07G001045	Wax gourd	mewgoB072
MELO3C012296	CSPI05G25780	Wild cucumber (PI 183967)	cpimeB369
MELO3C012296	CmaCh04G014690	Cucurbita maxima (Rimu)	cmameB640
MELO3C012296	CmoCh04G015420	Cucurbita moschata (Rifu)	cmomeB631
MELO3C012296	Lsi04G002020	Bottle gourd (USVL1VR-Ls)	lsimeB281
MELO3C012296	Cp4.1LG01g14050	Cucurbita pepo (Zucchini)	cpemeB363
MELO3C012296	CsGy5G025210	Cucumber (Gy14) v2	cgybmeB319
MELO3C012296	Carg01871	Silver-seed gourd	carmeB0834
MELO3C012296	CsaV3_5G034850	Cucumber (Chinese Long) v3	cucmeB381

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012296	Silver-seed gourd	carmeB1019
MELO3C012296	Cucumber (Chinese Long) v3	cucmeB376
MELO3C012296	Watermelon (97103) v2	mewmbB042
MELO3C012296	Wax gourd	mewgoB053
MELO3C012296	Melon (DHL92) v3.5.1	memeB006
MELO3C012296	Cucumber (Gy14) v1	cgymeB468
MELO3C012296	Cucumber (Gy14) v1	cgymeB474
MELO3C012296	Cucurbita maxima (Rimu)	cmameB264
MELO3C012296	Cucurbita maxima (Rimu)	cmameB351
MELO3C012296	Cucurbita maxima (Rimu)	cmameB661
MELO3C012296	Cucurbita moschata (Rifu)	cmomeB254
MELO3C012296	Cucurbita moschata (Rifu)	cmomeB344
MELO3C012296	Cucurbita moschata (Rifu)	cmomeB654
MELO3C012296	Wild cucumber (PI 183967)	cpimeB364
MELO3C012296	Cucumber (Chinese Long) v2	cumeB372
MELO3C012296	Watermelon (Charleston Gray)	mewcgB054
MELO3C012296	Watermelon (97103) v1	mewmB066
MELO3C012296	Cucurbita pepo (Zucchini)	cpemeB024
MELO3C012296	Cucurbita pepo (Zucchini)	cpemeB160
MELO3C012296	Bottle gourd (USVL1VR-Ls)	lsimeB016
MELO3C012296	Cucumber (Gy14) v2	cgybmeB316