CmaCh04G014690 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G014690
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 7488410 .. 7488913 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAAAATGGCTTCTGCACGTCTCTCGTCGTTCCGTTCTACGCTCCGTCTCCTTGGCGGCGAAGGCCATCAGACCACCGTAGAGCTCCGAGATGCCACGGCGGCGTCGGCGATGAAGGTCCTGGCCGTTATTTGTCTGTGTAATATCGGCGATCTTCTCTTTTGGTTCTTAAACGCAATCTGTTTGTGTGTTCTGCAGCGAACCAGAAGGACATCGTGGAAGCGAACTTGATGGTGTTGAAAGCGAGAATGGAGGATTTGAGGAAGAAAGAGCGGCGGATTCCGCTTCCGAAACGGGTCGGTGTAGTCGAAATCGATAATGGATGGAGGTATCAGTCAACGAGGGACGCGAAGTTGGATCGCAAGGTTGTGAAGAATTTTGCCCTAATTTCAGGGTGCTTGGAGGTGATGAGTACGGTTGGAGGTGCAGTTGGGCTTGTTTTTCTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTCTTCTAGTTCGTCATTTTTGGTAA

mRNA sequence

ATGGTGCAAAATGGCTTCTGCACGTCTCTCGTCGTTCCGTTCTACGCTCCGTCTCCTTGGCGGCGAAGGCCATCAGACCACCGTAGAGCTCCGAGATGCCACGGCGGCGTCGGCGATGAAGCGAACCAGAAGGACATCGTGGAAGCGAACTTGATGGTGTTGAAAGCGAGAATGGAGGATTTGAGGAAGAAAGAGCGGCGGATTCCGCTTCCGAAACGGGTCGGTGTAGTCGAAATCGATAATGGATGGAGGTATCAGTCAACGAGGGACGCGAAGTTGGATCGCAAGGTTGTGAAGAATTTTGCCCTAATTTCAGGGTGCTTGGAGGTGATGAGTACGGTTGGAGGTGCAGTTGGGCTTGTTTTTCTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTCTTCTAGTTCGTCATTTTTGGTAA

Coding sequence (CDS)

ATGGTGCAAAATGGCTTCTGCACGTCTCTCGTCGTTCCGTTCTACGCTCCGTCTCCTTGGCGGCGAAGGCCATCAGACCACCGTAGAGCTCCGAGATGCCACGGCGGCGTCGGCGATGAAGCGAACCAGAAGGACATCGTGGAAGCGAACTTGATGGTGTTGAAAGCGAGAATGGAGGATTTGAGGAAGAAAGAGCGGCGGATTCCGCTTCCGAAACGGGTCGGTGTAGTCGAAATCGATAATGGATGGAGGTATCAGTCAACGAGGGACGCGAAGTTGGATCGCAAGGTTGTGAAGAATTTTGCCCTAATTTCAGGGTGCTTGGAGGTGATGAGTACGGTTGGAGGTGCAGTTGGGCTTGTTTTTCTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTCTTCTAGTTCGTCATTTTTGGTAA

Protein sequence

MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDEANQKDIVEANLMVLKARMEDLRKKERRIPLPKRVGVVEIDNGWRYQSTRDAKLDRKVVKNFALISGCLEVMSTVGGAVGLVFLGGSLGICLVSLLVRHFW

Homology

[Close]

BLAST of CmaCh04G014690 vs. TrEMBL
Match: A0A0A0KRA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611640 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 86/130 (66.15%), Postives = 99/130 (76.15%), Query Frame = 1


Query: 14  FYAPSPWRRRP-SDHRRAPRCHGGVGDEANQKDIVEANLMVLKARMEDLRKKERRIPLP- 73
           F+ PS  RRRP SDHR APRCHG  GDE N+KDIVEANL VL+ RMEDLRKKER IP+  
Sbjct: 12  FHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLRKKERGIPIQI 71

Query: 74  KRVGVVEIDNGWRYQSTRDAK-LDRKVVKNFALISGCLEVMSTVGGAVGLVFLGGSLGIC 133
           ++ G+ E+D+G RY    D    D K +KN  LISGCLEV+S VGGAVGLVF+GGSLGIC
Sbjct: 72  RQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVGLVFVGGSLGIC 131

Query: 134 LVSLLVRHFW 141
            VS +VRHFW
Sbjct: 132 FVSFIVRHFW 141

[Close]

BLAST of CmaCh04G014690 vs. TrEMBL
Match: A0A067FF64_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036804mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-08
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1


Query: 39  DEANQKDIVEANLMVLKARMEDLRKKERRIPLPKRVGVVEIDNGWRYQSTRDAKLDRKVV 98
           DE  + DIV+ANL  L+ R+E+++KKE             ++NGW Y+ + D     +  
Sbjct: 36  DEGKRADIVDANLSTLRKRIEEVKKKEMLC--------CRLENGWNYKRSYDDHYRNR-- 95

Query: 99  KNFALISGCLEVMSTVGGAVGLVFLGGSLGICLVSLLV 137
           K   ++ G ++VM  VGGAVG VFL GSL + LVS LV
Sbjct: 96  KRADILYGLVQVMGFVGGAVGFVFLSGSLCLFLVSFLV 123

[Close]

BLAST of CmaCh04G014690 vs. TrEMBL
Match: V4UBL0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017462mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 1


Query: 39  DEANQKDIVEANLMVLKARMEDLRKKERRIPLPKRVGVVEIDNGWRYQSTRDAKLDRKVV 98
           DE  + DIV+ANL  L+ R+E+++KKE             ++NGW Y+ + D     +  
Sbjct: 36  DEGKRADIVDANLSTLRKRIEEVKKKEMLC--------CRLENGWNYKRSYDDHYRNR-- 95

Query: 99  KNFALISGCLEVMSTVGGAVGLVFLGGSLGICLVSLLV 137
           K   ++ G +++M  VGGAVG VFL GSL + LVS LV
Sbjct: 96  KRADILYGSVKMMGFVGGAVGFVFLSGSLCLFLVSFLV 123

[Close]

BLAST of CmaCh04G014690 vs. TrEMBL
Match: B9HW96_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12620g PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-06
Identity = 48/128 (37.50%), Postives = 62/128 (48.44%), Query Frame = 1


Query: 19  PWRRRP----SDHRRAPRCHGGVGD------EANQKDIVEANLMVLKARMEDLRKKERRI 78
           P+RR      S H R  RC     D           +IV+ANL +L+ R+ +++ KE   
Sbjct: 14  PFRRHKELITSKHPRVIRCQSFREDVLKPWLAGTSANIVDANLGILRGRIAEVKMKE--- 73

Query: 79  PLPKRVGVVEIDNGWRYQSTRDAKLDRKVVKNFALISGCLEVMSTVGGAVGLVFLGGSLG 137
              K      + N W YQS  D K  R      A++S  LE+M    GA+G VFL GSL 
Sbjct: 74  ---KLDAWCRLKNDWNYQSGYDHKYKRD-----AMLSESLEIMGFASGALGFVFLSGSLC 130

[Close]

BLAST of CmaCh04G014690 vs. TrEMBL
Match: D7TSW1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g02060 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.6e-06
Identity = 40/112 (35.71%), Postives = 55/112 (49.11%), Query Frame = 1


Query: 25  SDHRRAPRCHGGVGDEANQKDIVEANLMVLKARMEDLRKKERRIPLPKRVGVVEIDNGWR 84
           S H+R         DE    +IV+ANL VLK R++ +R KER     +       + GW 
Sbjct: 19  SSHKRLQVRAQSYRDEGRSSNIVDANLRVLKERIDVVRMKERLERCCRH------EYGWN 78

Query: 85  YQSTRDAKLDRKVVKNFALISGCLEVMSTVGGAVGLVFLGGSLGICLVSLLV 137
           Y S  D KL +         S   +++  VGG V L    G++G+CLVSLLV
Sbjct: 79  YASGNDCKLQKDTE-----FSHLFDLVGLVGGFVSLTIFSGTVGLCLVSLLV 119

[Close]

BLAST of CmaCh04G014690 vs. NCBI nr
Match: gi|659091702|ref|XP_008446686.1| (PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 9.5e-39
Identity = 88/132 (66.67%), Postives = 103/132 (78.03%), Query Frame = 1


Query: 14  FYAPSPWRRRPSDHRRAPRCHGGVGDEANQKDIVEANLMVLKARMEDLRKKERRIPLP-- 73
           F+ PS  +RRPSDH  APRCH   GDE N+KDIVEANL VL+ RMEDLRKKERRIP+P  
Sbjct: 13  FHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRKKERRIPIPIP 72

Query: 74  -KRVGVVEIDNGWRYQSTR--DAKLDRKVVKNFALISGCLEVMSTVGGAVGLVFLGGSLG 133
            ++ G+ E D+G RY S++      D K +KN ALISGCLEV+STVGGAVGLVF+GGSLG
Sbjct: 73  IRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGAVGLVFVGGSLG 132

Query: 134 ICLVSLLVRHFW 141
           ICLVS +VRHFW
Sbjct: 133 ICLVSFIVRHFW 144

[Close]

BLAST of CmaCh04G014690 vs. NCBI nr
Match: gi|778706164|ref|XP_011655810.1| (PREDICTED: uncharacterized protein LOC105435587 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.5e-36
Identity = 86/130 (66.15%), Postives = 99/130 (76.15%), Query Frame = 1


Query: 14  FYAPSPWRRRP-SDHRRAPRCHGGVGDEANQKDIVEANLMVLKARMEDLRKKERRIPLP- 73
           F+ PS  RRRP SDHR APRCHG  GDE N+KDIVEANL VL+ RMEDLRKKER IP+  
Sbjct: 12  FHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLRKKERGIPIQI 71

Query: 74  KRVGVVEIDNGWRYQSTRDAK-LDRKVVKNFALISGCLEVMSTVGGAVGLVFLGGSLGIC 133
           ++ G+ E+D+G RY    D    D K +KN  LISGCLEV+S VGGAVGLVF+GGSLGIC
Sbjct: 72  RQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVGLVFVGGSLGIC 131

Query: 134 LVSLLVRHFW 141
            VS +VRHFW
Sbjct: 132 FVSFIVRHFW 141

[Close]

BLAST of CmaCh04G014690 vs. NCBI nr
Match: gi|731369855|ref|XP_010660511.1| (PREDICTED: uncharacterized protein LOC104881607 [Vitis vinifera])

HSP 1 Score: 72.0 bits (175), Expect = 9.2e-10
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 1


Query: 39  DEANQKDIVEANLMVLKARMEDLRKKERRIPLPKRVGVVEIDNGWRYQSTRDAKLDRKVV 98
           DE    +IV+ANL +L+ R+E+++KKER       +    + NGW YQ+  D K  R   
Sbjct: 33  DEGKSANIVDANLRILRERIEEVKKKER-------LNTCSLQNGWTYQAGYDHKHKRA-- 92

Query: 99  KNFALISGCLEVMSTVGGAVGLVFLGGSLGICLVSLLV 137
              A++S  ++++ TV GA+GLVF  GS  ICLVS+LV
Sbjct: 93  ---AILSESIQLIGTVSGALGLVFFSGSFLICLVSILV 118

[Close]

BLAST of CmaCh04G014690 vs. NCBI nr
Match: gi|568828975|ref|XP_006468809.1| (PREDICTED: uncharacterized protein LOC102624832 [Citrus sinensis])

HSP 1 Score: 65.9 bits (159), Expect = 6.6e-08
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1


Query: 39  DEANQKDIVEANLMVLKARMEDLRKKERRIPLPKRVGVVEIDNGWRYQSTRDAKLDRKVV 98
           DE  + DIV+ANL  L+ R+E+++KKE             ++NGW Y+ + D     +  
Sbjct: 36  DEGKRADIVDANLSTLRKRIEEVKKKEMLC--------CRLENGWNYKRSYDDHYRNR-- 95

Query: 99  KNFALISGCLEVMSTVGGAVGLVFLGGSLGICLVSLLV 137
           K   ++ G ++VM  VGGAVG VFL GSL + LVS LV
Sbjct: 96  KRADILYGLVQVMGFVGGAVGFVFLSGSLCLFLVSFLV 123

[Close]

BLAST of CmaCh04G014690 vs. NCBI nr
Match: gi|567911993|ref|XP_006448310.1| (hypothetical protein CICLE_v10017462mg [Citrus clementina])

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 1


Query: 39  DEANQKDIVEANLMVLKARMEDLRKKERRIPLPKRVGVVEIDNGWRYQSTRDAKLDRKVV 98
           DE  + DIV+ANL  L+ R+E+++KKE             ++NGW Y+ + D     +  
Sbjct: 36  DEGKRADIVDANLSTLRKRIEEVKKKEMLC--------CRLENGWNYKRSYDDHYRNR-- 95

Query: 99  KNFALISGCLEVMSTVGGAVGLVFLGGSLGICLVSLLV 137
           K   ++ G +++M  VGGAVG VFL GSL + LVS LV
Sbjct: 96  KRADILYGSVKMMGFVGGAVGFVFLSGSLCLFLVSFLV 123

The following BLAST results are available for this feature:

BLAST of CmaCh04G014690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G014690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRA6_CUCSA	1.1e-36	66.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611640 PE=4 SV=1	[more]
A0A067FF64_CITSI	4.6e-08	40.82	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036804mg PE=4 SV=1	[more]
V4UBL0_9ROSI	1.3e-07	39.80	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017462mg PE=4 SV=1	[more]
B9HW96_POPTR	3.3e-06	37.50	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12620g PE=4 SV=1	[more]
D7TSW1_VITVI	9.6e-06	35.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g02060 PE=4 SV=...	[more]

BLAST of CmaCh04G014690 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G014690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091702\|ref\|XP_008446686.1\|	9.5e-39	66.67	PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo]	[more]
gi\|778706164\|ref\|XP_011655810.1\|	1.5e-36	66.15	PREDICTED: uncharacterized protein LOC105435587 [Cucumis sativus]	[more]
gi\|731369855\|ref\|XP_010660511.1\|	9.2e-10	41.84	PREDICTED: uncharacterized protein LOC104881607 [Vitis vinifera]	[more]
gi\|568828975\|ref\|XP_006468809.1\|	6.6e-08	40.82	PREDICTED: uncharacterized protein LOC102624832 [Citrus sinensis]	[more]
gi\|567911993\|ref\|XP_006448310.1\|	1.9e-07	39.80	hypothetical protein CICLE_v10017462mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G014690.1	CmaCh04G014690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 44..64 scor
None	No IPR available	PANTHER	PTHR38225	FAMILY NOT NAMED	coord: 8..140 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G014690	Cla020440	Watermelon (97103) v1	cmawmB699
CmaCh04G014690	Csa5G611640	Cucumber (Chinese Long) v2	cmacuB748
CmaCh04G014690	MELO3C012296	Melon (DHL92) v3.5.1	cmameB640
CmaCh04G014690	ClCG05G022270	Watermelon (Charleston Gray)	cmawcgB655
CmaCh04G014690	CSPI05G25780	Wild cucumber (PI 183967)	cmacpiB755
CmaCh04G014690	CmoCh04G015420	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G014690	Lsi04G002020	Bottle gourd (USVL1VR-Ls)	cmalsiB669
CmaCh04G014690	Cp4.1LG01g14050	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G014690	MELO3C012296.2	Melon (DHL92) v3.6.1	cmamedB726
CmaCh04G014690	CsaV3_5G034850	Cucumber (Chinese Long) v3	cmacucB0885
CmaCh04G014690	Cla97C05G104040	Watermelon (97103) v2	cmawmbB758
CmaCh04G014690	Bhi07G001045	Wax gourd	cmawgoB0893
CmaCh04G014690	CsGy5G025210	Cucumber (Gy14) v2	cgybcmaB672
CmaCh04G014690	Carg01871	Silver-seed gourd	carcmaB1170

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G014690	Cucurbita maxima (Rimu)	cmacmaB329
CmaCh04G014690	Cucurbita maxima (Rimu)	cmacmaB402
CmaCh04G014690	Cucurbita maxima (Rimu)	cmacmaB537
CmaCh04G014690	Cucumber (Gy14) v1	cgycmaB0781
CmaCh04G014690	Cucumber (Gy14) v1	cgycmaB0801
CmaCh04G014690	Cucurbita moschata (Rifu)	cmacmoB696
CmaCh04G014690	Cucurbita moschata (Rifu)	cmacmoB706
CmaCh04G014690	Cucurbita moschata (Rifu)	cmacmoB742
CmaCh04G014690	Wild cucumber (PI 183967)	cmacpiB744
CmaCh04G014690	Cucumber (Chinese Long) v2	cmacuB737
CmaCh04G014690	Melon (DHL92) v3.5.1	cmameB630
CmaCh04G014690	Watermelon (Charleston Gray)	cmawcgB640
CmaCh04G014690	Watermelon (Charleston Gray)	cmawcgB666
CmaCh04G014690	Watermelon (97103) v1	cmawmB716
CmaCh04G014690	Cucurbita pepo (Zucchini)	cmacpeB700
CmaCh04G014690	Bottle gourd (USVL1VR-Ls)	cmalsiB627
CmaCh04G014690	Cucumber (Gy14) v2	cgybcmaB662
CmaCh04G014690	Melon (DHL92) v3.6.1	cmamedB712
CmaCh04G014690	Silver-seed gourd	carcmaB1457
CmaCh04G014690	Cucumber (Chinese Long) v3	cmacucB0875
CmaCh04G014690	Watermelon (97103) v2	cmawmbB711
CmaCh04G014690	Wax gourd	cmawgoB0833