Cla97C05G104040 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G104040
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr05 : 32034123 .. 32034407 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTGAGAGCGAGAATGGAGGATTTGAGGAAGAAGGAGCGGCGGATTTTGCCTCCGGCACGGCGCGGAGGACTTGAATTCGATAATGGCTGGAGGTATTTGTCGATAAGCGACGACGCGAAGTTCGATCGCGATTTTGATTGCAAGATTTTGAAGAATTTTGCCCTAATTTCAGAGTGTTTGGAGGTGGTGACCACGGTTGGCAGTGCAGTCGGGCTTGTTTTTGTTGGTGGATCTTTAGGCATCTGTTTGGTTTCTCTTTTGGTCCGCATTTTTTGGTAA

mRNA sequence

ATGGTGTTGAGAGCGAGAATGGAGGATTTGAGGAAGAAGGAGCGGCGGATTTTGCCTCCGGCACGGCGCGGAGGACTTGAATTCGATAATGGCTGGAGGTATTTGTCGATAAGCGACGACGCGAAGTTCGATCGCGATTTTGATTGCAAGATTTTGAAGAATTTTGCCCTAATTTCAGAGTGTTTGGAGGTGGTGACCACGGTTGGCAGTGCAGTCGGGCTTGTTTTTGTTGGTGGATCTTTAGGCATCTGTTTGGTTTCTCTTTTGGTCCGCATTTTTTGGTAA

Coding sequence (CDS)

ATGGTGTTGAGAGCGAGAATGGAGGATTTGAGGAAGAAGGAGCGGCGGATTTTGCCTCCGGCACGGCGCGGAGGACTTGAATTCGATAATGGCTGGAGGTATTTGTCGATAAGCGACGACGCGAAGTTCGATCGCGATTTTGATTGCAAGATTTTGAAGAATTTTGCCCTAATTTCAGAGTGTTTGGAGGTGGTGACCACGGTTGGCAGTGCAGTCGGGCTTGTTTTTGTTGGTGGATCTTTAGGCATCTGTTTGGTTTCTCTTTTGGTCCGCATTTTTTGGTAA

Protein sequence

MVLRARMEDLRKKERRILPPARRGGLEFDNGWRYLSISDDAKFDRDFDCKILKNFALISECLEVVTTVGSAVGLVFVGGSLGICLVSLLVRIFW

Homology

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BLAST of Cla97C05G104040 vs. NCBI nr
Match: XP_022150638.1 (uncharacterized protein LOC111018723 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 4.3e-23
Identity = 65/90 (72.22%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 2   VLRARMEDLRKKERRILPPARRGGLEFDNGWRYLSISDDAKFDRDFDCKILKNFALISEC 61
           VLR RMEDLRKKERRI  PA  G +EFDN W Y+S S DAK DRD + K++KNFALISEC
Sbjct: 56  VLRERMEDLRKKERRI--PASGGRIEFDNCWSYMSRS-DAKLDRDCERKMVKNFALISEC 115

Query: 62  LEVVTTVGSAVGLVFVGGSLGICLVSLLVR 92
           LEV++  G AVGLV VGGSLGICLVSLL+R
Sbjct: 116 LEVISMAGGAVGLVLVGGSLGICLVSLLIR 142

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BLAST of Cla97C05G104040 vs. NCBI nr
Match: XP_008446686.1 (PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 67/97 (69.07%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 2   VLRARMEDLRKKERRI---LPPARRGGLEFDNGWRYLSISDDAKFDRD-FDCKILKNFAL 61
           VLR RMEDLRKKERRI   +P  +RG  EFD+G RYLS    +K D   FD K LKN AL
Sbjct: 52  VLRTRMEDLRKKERRIPIPIPIRQRGMEEFDDGRRYLS----SKLDGGCFDGKKLKNGAL 111

Query: 62  ISECLEVVTTVGSAVGLVFVGGSLGICLVSLLVRIFW 95
           IS CLEVV+TVG AVGLVFVGGSLGICLVS +VR FW
Sbjct: 112 ISGCLEVVSTVGGAVGLVFVGGSLGICLVSFIVRHFW 144

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BLAST of Cla97C05G104040 vs. NCBI nr
Match: XP_011655810.1 (PREDICTED: uncharacterized protein LOC105435587 [Cucumis sativus] >KGN52133.1 hypothetical protein Csa_5G611640 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 6.6e-16
Identity = 58/94 (61.70%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 2   VLRARMEDLRKKERRILPPARRGGL-EFDNGWRYLSISDDAKFDRDFDCKILKNFALISE 61
           VLR RMEDLRKKER I    R+ G+ E D+G RYL   D   FD     K +KN  LIS 
Sbjct: 52  VLRTRMEDLRKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDG----KKMKNCGLISG 111

Query: 62  CLEVVTTVGSAVGLVFVGGSLGICLVSLLVRIFW 95
           CLEVV+ VG AVGLVFVGGSLGIC VS +VR FW
Sbjct: 112 CLEVVSRVGGAVGLVFVGGSLGICFVSFIVRHFW 141

[Close]

BLAST of Cla97C05G104040 vs. TrEMBL
Match: tr|A0A1S3BFP0|A0A1S3BFP0_CUCME (uncharacterized protein LOC103489333 OS=Cucumis melo OX=3656 GN=LOC103489333 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-20
Identity = 67/97 (69.07%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 2   VLRARMEDLRKKERRI---LPPARRGGLEFDNGWRYLSISDDAKFDRD-FDCKILKNFAL 61
           VLR RMEDLRKKERRI   +P  +RG  EFD+G RYLS    +K D   FD K LKN AL
Sbjct: 52  VLRTRMEDLRKKERRIPIPIPIRQRGMEEFDDGRRYLS----SKLDGGCFDGKKLKNGAL 111

Query: 62  ISECLEVVTTVGSAVGLVFVGGSLGICLVSLLVRIFW 95
           IS CLEVV+TVG AVGLVFVGGSLGICLVS +VR FW
Sbjct: 112 ISGCLEVVSTVGGAVGLVFVGGSLGICLVSFIVRHFW 144

[Close]

BLAST of Cla97C05G104040 vs. TrEMBL
Match: tr|A0A0A0KRA6|A0A0A0KRA6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611640 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.4e-16
Identity = 58/94 (61.70%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 2   VLRARMEDLRKKERRILPPARRGGL-EFDNGWRYLSISDDAKFDRDFDCKILKNFALISE 61
           VLR RMEDLRKKER I    R+ G+ E D+G RYL   D   FD     K +KN  LIS 
Sbjct: 52  VLRTRMEDLRKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDG----KKMKNCGLISG 111

Query: 62  CLEVVTTVGSAVGLVFVGGSLGICLVSLLVRIFW 95
           CLEVV+ VG AVGLVFVGGSLGIC VS +VR FW
Sbjct: 112 CLEVVSRVGGAVGLVFVGGSLGICFVSFIVRHFW 141

The following BLAST results are available for this feature:

BLAST of Cla97C05G104040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150638.1	4.3e-23	72.22	uncharacterized protein LOC111018723 [Momordica charantia]	[more]
XP_008446686.1	3.4e-20	69.07	PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo]	[more]
XP_011655810.1	6.6e-16	61.70	PREDICTED: uncharacterized protein LOC105435587 [Cucumis sativus] >KGN52133.1 hy...	[more]

BLAST of Cla97C05G104040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BFP0\|A0A1S3BFP0_CUCME	2.2e-20	69.07	uncharacterized protein LOC103489333 OS=Cucumis melo OX=3656 GN=LOC103489333 PE=...	[more]
tr\|A0A0A0KRA6\|A0A0A0KRA6_CUCSA	4.4e-16	61.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611640 PE=4 SV=1	[more]

BLAST of Cla97C05G104040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G104040 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G104040.1	Cla97C05G104040.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G104040	Cla020440	Watermelon (97103) v1	wmwmbB207
Cla97C05G104040	Csa5G611640	Cucumber (Chinese Long) v2	cuwmbB383
Cla97C05G104040	MELO3C012296	Melon (DHL92) v3.5.1	mewmbB060
Cla97C05G104040	ClCG05G022270	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G104040	CSPI05G25780	Wild cucumber (PI 183967)	cpiwmbB402
Cla97C05G104040	CmaCh04G014690	Cucurbita maxima (Rimu)	cmawmbB758
Cla97C05G104040	CmoCh04G015420	Cucurbita moschata (Rifu)	cmowmbB729
Cla97C05G104040	Lsi04G002020	Bottle gourd (USVL1VR-Ls)	lsiwmbB284
Cla97C05G104040	CsGy5G025210	Cucumber (Gy14) v2	cgybwmbB365
Cla97C05G104040	MELO3C012296.2	Melon (DHL92) v3.6.1	medwmbB056
Cla97C05G104040	Carg01871	Silver-seed gourd	carwmbB0878
Cla97C05G104040	CsaV3_5G034850	Cucumber (Chinese Long) v3	cucwmbB398
Cla97C05G104040	Bhi07G001045	Wax gourd	wgowmbB530

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G104040	Watermelon (97103) v2	wmbwmbB025
Cla97C05G104040	Silver-seed gourd	carwmbB1109
Cla97C05G104040	Cucumber (Gy14) v2	cgybwmbB361
Cla97C05G104040	Cucurbita maxima (Rimu)	cmawmbB423
Cla97C05G104040	Cucumber (Gy14) v1	cgywmbB488
Cla97C05G104040	Cucumber (Gy14) v1	cgywmbB498
Cla97C05G104040	Cucurbita maxima (Rimu)	cmawmbB308
Cla97C05G104040	Cucurbita maxima (Rimu)	cmawmbB768
Cla97C05G104040	Cucurbita moschata (Rifu)	cmowmbB290
Cla97C05G104040	Cucurbita moschata (Rifu)	cmowmbB403
Cla97C05G104040	Cucurbita moschata (Rifu)	cmowmbB740
Cla97C05G104040	Wild cucumber (PI 183967)	cpiwmbB398
Cla97C05G104040	Cucumber (Chinese Long) v3	cucwmbB394
Cla97C05G104040	Cucumber (Chinese Long) v2	cuwmbB380
Cla97C05G104040	Bottle gourd (USVL1VR-Ls)	lsiwmbB021
Cla97C05G104040	Melon (DHL92) v3.6.1	medwmbB022
Cla97C05G104040	Melon (DHL92) v3.5.1	mewmbB025
Cla97C05G104040	Watermelon (Charleston Gray)	wcgwmbB111
Cla97C05G104040	Watermelon (97103) v1	wmwmbB271
Cla97C05G104040	Wax gourd	wgowmbB081
Cla97C05G104040	Wax gourd	wgowmbB532