MELO3C012296T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012296T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
Location	chr10 : 1398527 .. 1399065 (+)
Sequence length	435

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCCGCTGGTCTCCCTTCGTTCCATTATTTCCACCCTCCGTCTTCTCGGCAGCGAAGACCATCCGACCACTGCAGTGCTCCAAGATGCCACAGCAGGGCCGGCGATGAAGGTCCTCAACCACACGCACTACTCTATCTCTGTAATATCGACGATCTTCATCTCTTTAATTACTTCTTAAACACAAAATCTTTTTTTTCTATACATGTGCTGCAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGACGGATTCCGATTCCGATTCCGATACGGCAGCGAGGAATGGAAGAATTTGATGATGGCCGGAGGTATTTGTCGTCGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAATTGAAAAATGGTGCCCTGATTTCAGGGTGTTTGGAGGTGGTGAGTACGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTTTTATAGTCCGTCATTTTTGGTGA

mRNA sequence

ATGGCTTCCTCCGCTGGTCTCCCTTCGTTCCATTATTTCCACCCTCCGTCTTCTCGGCAGCGAAGACCATCCGACCACTGCAGTGCTCCAAGATGCCACAGCAGGGCCGGCGATGAAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGACGGATTCCGATTCCGATTCCGATACGGCAGCGAGGAATGGAAGAATTTGATGATGGCCGGAGGTATTTGTCGTCGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAATTGAAAAATGGTGCCCTGATTTCAGGGTGTTTGGAGGTGGTGAGTACGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTTTTATAGTCCGTCATTTTTGGTGA

Coding sequence (CDS)

ATGGCTTCCTCCGCTGGTCTCCCTTCGTTCCATTATTTCCACCCTCCGTCTTCTCGGCAGCGAAGACCATCCGACCACTGCAGTGCTCCAAGATGCCACAGCAGGGCCGGCGATGAAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGACGGATTCCGATTCCGATTCCGATACGGCAGCGAGGAATGGAAGAATTTGATGATGGCCGGAGGTATTTGTCGTCGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAATTGAAAAATGGTGCCCTGATTTCAGGGTGTTTGGAGGTGGTGAGTACGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTTTTATAGTCCGTCATTTTTGGTGA

Protein sequence

MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGAVGLVFVGGSLGICLVSFIVRHFW*

Homology

[Close]

BLAST of MELO3C012296T1 vs. TrEMBL
Match: A0A0A0KRA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611640 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-58
Identity = 122/143 (85.31%), Postives = 125/143 (87.41%), Query Frame = 1


Query: 3   SSAGLPSFHYFHPPSSRQRRP-SDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLR 62
           +SA LPSFHYFH PSS +RRP SDH SAPRCH RAGDEENEKDIVEANLTVLRTRMEDLR
Sbjct: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLR 61

Query: 63  KKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGA 122
           KKER IPI I  RQRGMEE DDG RYL  KLDGGCFDGKK+KN  LISGCLEVVS VGGA
Sbjct: 62  KKERGIPIQI--RQRGMEELDDGGRYLW-KLDGGCFDGKKMKNCGLISGCLEVVSRVGGA 121

Query: 123 VGLVFVGGSLGICLVSFIVRHFW 145
           VGLVFVGGSLGIC VSFIVRHFW
Sbjct: 122 VGLVFVGGSLGICFVSFIVRHFW 141

[Close]

BLAST of MELO3C012296T1 vs. NCBI nr
Match: gi|659091702|ref|XP_008446686.1| (PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 6.3e-78
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1


Query: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60
           MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL
Sbjct: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120
           RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG
Sbjct: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120

Query: 121 AVGLVFVGGSLGICLVSFIVRHFW 145
           AVGLVFVGGSLGICLVSFIVRHFW
Sbjct: 121 AVGLVFVGGSLGICLVSFIVRHFW 144

[Close]

BLAST of MELO3C012296T1 vs. NCBI nr
Match: gi|778706164|ref|XP_011655810.1| (PREDICTED: uncharacterized protein LOC105435587 [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-58
Identity = 122/143 (85.31%), Postives = 125/143 (87.41%), Query Frame = 1


Query: 3   SSAGLPSFHYFHPPSSRQRRP-SDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLR 62
           +SA LPSFHYFH PSS +RRP SDH SAPRCH RAGDEENEKDIVEANLTVLRTRMEDLR
Sbjct: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLR 61

Query: 63  KKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGA 122
           KKER IPI I  RQRGMEE DDG RYL  KLDGGCFDGKK+KN  LISGCLEVVS VGGA
Sbjct: 62  KKERGIPIQI--RQRGMEELDDGGRYLW-KLDGGCFDGKKMKNCGLISGCLEVVSRVGGA 121

Query: 123 VGLVFVGGSLGICLVSFIVRHFW 145
           VGLVFVGGSLGIC VSFIVRHFW
Sbjct: 122 VGLVFVGGSLGICFVSFIVRHFW 141

[Close]

BLAST of MELO3C012296T1 vs. NCBI nr
Match: gi|731369855|ref|XP_010660511.1| (PREDICTED: uncharacterized protein LOC104881607 [Vitis vinifera])

HSP 1 Score: 58.9 bits (141), Expect = 8.4e-06
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 1


Query: 38  DEENEKDIVEANLTVLRTRMEDLRKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCF 97
           DE    +IV+ANL +LR R+E+++KKER     +           +G  Y +       +
Sbjct: 33  DEGKSANIVDANLRILRERIEEVKKKERLNTCSL----------QNGWTYQAG------Y 92

Query: 98  DGKKLKNGALISGCLEVVSTVGGAVGLVFVGGSLGICLVSFIV 141
           D K  K  A++S  ++++ TV GA+GLVF  GS  ICLVS +V
Sbjct: 93  DHKH-KRAAILSESIQLIGTVSGALGLVFFSGSFLICLVSILV 118

The following BLAST results are available for this feature:

BLAST of MELO3C012296T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRA6_CUCSA	1.0e-58	85.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611640 PE=4 SV=1	[more]

BLAST of MELO3C012296T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091702\|ref\|XP_008446686.1\|	6.3e-78	100.00	PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo]	[more]
gi\|778706164\|ref\|XP_011655810.1\|	1.5e-58	85.31	PREDICTED: uncharacterized protein LOC105435587 [Cucumis sativus]	[more]
gi\|731369855\|ref\|XP_010660511.1\|	8.4e-06	36.89	PREDICTED: uncharacterized protein LOC104881607 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C012296	MELO3C012296	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C012296T1	MELO3C012296T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012296T1.cds1	MELO3C012296T1.cds1	CDS
MELO3C012296T1.cds2	MELO3C012296T1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 43..63 scor