Csa5G611640.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G611640.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 23909871 .. 23910425 (-)
Sequence length	426

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCATGGTACAAAATGGCATCCGCTCCTCTCCCCTCGTTCCATTATTTCCACACTCCGTCTTCTCTGCGGCGAAGGCCATTATCCGACCACCGCAGTGCTCCGAGATGCCACGGCAGGGCCGGCGATGAAGGTACGTACGTCCTCAGCCTGCACCCGCAGTACTACTCTATCTCTGTAATATCAACGATCTTCATCTCTTTAACTACTTCTTAAACACAAAATCTTTTTTCTATGTATGTGCTGCAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGAGGGATTCCGATTCAGATACGGCAGCGAGGAATGGAAGAATTGGATGATGGCGGGAGGTATTTGTGGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAGATGAAAAATTGTGGGCTGATTTCAGGGTGCTTGGAGGTGGTGAGTAGGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGCATCTGCTTCGTTTCTTTTATTGTTCGTCATTTTTGGTAA

mRNA sequence

ATGGCATCCGCTCCTCTCCCCTCGTTCCATTATTTCCACACTCCGTCTTCTCTGCGGCGAAGGCCATTATCCGACCACCGCAGTGCTCCGAGATGCCACGGCAGGGCCGGCGATGAAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGAGGGATTCCGATTCAGATACGGCAGCGAGGAATGGAAGAATTGGATGATGGCGGGAGGTATTTGTGGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAGATGAAAAATTGTGGGCTGATTTCAGGGTGCTTGGAGGTGGTGAGTAGGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGCATCTGCTTCGTTTCTTTTATTGTTCGTCATTTTTGGTAA

Coding sequence (CDS)

ATGGCATCCGCTCCTCTCCCCTCGTTCCATTATTTCCACACTCCGTCTTCTCTGCGGCGAAGGCCATTATCCGACCACCGCAGTGCTCCGAGATGCCACGGCAGGGCCGGCGATGAAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGAGGGATTCCGATTCAGATACGGCAGCGAGGAATGGAAGAATTGGATGATGGCGGGAGGTATTTGTGGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAGATGAAAAATTGTGGGCTGATTTCAGGGTGCTTGGAGGTGGTGAGTAGGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGCATCTGCTTCGTTTCTTTTATTGTTCGTCATTTTTGGTAA

Protein sequence

MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLRKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVGLVFVGGSLGICFVSFIVRHFW*

Homology

[Close]

BLAST of Csa5G611640.1 vs. TrEMBL
Match: A0A0A0KRA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611640 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.1e-77
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1


Query: 1   MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60
           MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL
Sbjct: 1   MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG 120
           RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG
Sbjct: 61  RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG 120

Query: 121 LVFVGGSLGICFVSFIVRHFW 142
           LVFVGGSLGICFVSFIVRHFW
Sbjct: 121 LVFVGGSLGICFVSFIVRHFW 141

[Close]

BLAST of Csa5G611640.1 vs. NCBI nr
Match: gi|778706164|ref|XP_011655810.1| (PREDICTED: uncharacterized protein LOC105435587 [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 3.0e-77
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1


Query: 1   MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60
           MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL
Sbjct: 1   MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG 120
           RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG
Sbjct: 61  RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVG 120

Query: 121 LVFVGGSLGICFVSFIVRHFW 142
           LVFVGGSLGICFVSFIVRHFW
Sbjct: 121 LVFVGGSLGICFVSFIVRHFW 141

[Close]

BLAST of Csa5G611640.1 vs. NCBI nr
Match: gi|659091702|ref|XP_008446686.1| (PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58
Identity = 122/143 (85.31%), Postives = 125/143 (87.41%), Query Frame = 1


Query: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLR 61
           +SA LPSFHYFH PSS +RRP SDH SAPRCH RAGDEENEKDIVEANLTVLRTRMEDLR
Sbjct: 3   SSAGLPSFHYFHPPSSRQRRP-SDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLR 62

Query: 62  KKERGIPIQI--RQRGMEELDDGGRYLW-KLDGGCFDGKKMKNCGLISGCLEVVSRVGGA 121
           KKER IPI I  RQRGMEE DDG RYL  KLDGGCFDGKK+KN  LISGCLEVVS VGGA
Sbjct: 63  KKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGA 122

Query: 122 VGLVFVGGSLGICFVSFIVRHFW 142
           VGLVFVGGSLGIC VSFIVRHFW
Sbjct: 123 VGLVFVGGSLGICLVSFIVRHFW 144

The following BLAST results are available for this feature:

BLAST of Csa5G611640.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRA6_CUCSA	2.1e-77	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611640 PE=4 SV=1	[more]

BLAST of Csa5G611640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778706164\|ref\|XP_011655810.1\|	3.0e-77	100.00	PREDICTED: uncharacterized protein LOC105435587 [Cucumis sativus]	[more]
gi\|659091702\|ref\|XP_008446686.1\|	1.4e-58	85.31	PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa5G611640	Csa5G611640	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa5G611640.1	Csa5G611640.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa5G611640.1.cds2	Csa5G611640.1.cds2	CDS
Csa5G611640.1.cds1	Csa5G611640.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa5G611640.1.utr5p1	Csa5G611640.1.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 43..63 scor