Csa1G423060 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G423060
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR008480 (Protein of unknown function DUF761, plant)
Location	Chr1 : 15382031 .. 15382393 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGATTAGCTTATTGGGTCGGCTGAGGAAGGCGGTGAAGAAGATTAGATTCATGATGAATTTTAGCATTCAAAGATGGCGGTTAGCGGCGATGTTAGGCCGGACTTCGTCGAGAAATCTCCGTCTTAGCTTCACCGAACGTCCGGGATTAAAGGCTTGTTCGGAAGATATTATTATGGAAGAAGAACAGTCGGTTTCTTCTTCATCTCGTGGGCTACAAAGAACCACCAGCTACGCTTCTGAAGATGACGTGGACTCCCGTGCGGAGGCTTTTATTGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGAAATAGTTTTGATTAA

mRNA sequence

ATGGAGGCGATTAGCTTATTGGGTCGGCTGAGGAAGGCGGTGAAGAAGATTAGATTCATGATGAATTTTAGCATTCAAAGATGGCGGTTAGCGGCGATGTTAGGCCGGACTTCGTCGAGAAATCTCCGTCTTAGCTTCACCGAACGTCCGGGATTAAAGGCTTGTTCGGAAGATATTATTATGGAAGAAGAACAGTCGGTTTCTTCTTCATCTCGTGGGCTACAAAGAACCACCAGCTACGCTTCTGAAGATGACGTGGACTCCCGTGCGGAGGCTTTTATTGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGAAATAGTTTTGATTAA

Coding sequence (CDS)

ATGGAGGCGATTAGCTTATTGGGTCGGCTGAGGAAGGCGGTGAAGAAGATTAGATTCATGATGAATTTTAGCATTCAAAGATGGCGGTTAGCGGCGATGTTAGGCCGGACTTCGTCGAGAAATCTCCGTCTTAGCTTCACCGAACGTCCGGGATTAAAGGCTTGTTCGGAAGATATTATTATGGAAGAAGAACAGTCGGTTTCTTCTTCATCTCGTGGGCTACAAAGAACCACCAGCTACGCTTCTGAAGATGACGTGGACTCCCGTGCGGAGGCTTTTATTGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGAAATAGTTTTGATTAA

Protein sequence

MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDIIMEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD*

Homology

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BLAST of Csa1G423060 vs. TrEMBL
Match: A0A0A0LUK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423060 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.4e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII
Sbjct: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120
           MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD
Sbjct: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120

[Close]

BLAST of Csa1G423060 vs. TrEMBL
Match: A0A061GQY6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_039000 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.5e-31
Identity = 73/120 (60.83%), Postives = 94/120 (78.33%), Query Frame = 1


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           ME  SLL RLR+AVKK++F++NF++ RWR+A+M+G + S   RLSFT+RPGL+AC++D  
Sbjct: 1   MEKWSLLSRLRRAVKKVKFLLNFNMNRWRIASMIGASPSSQ-RLSFTDRPGLRACADDY- 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120
                S  S SR L RTTSY SEDD+D RAE FIANF++QL+IERQVSL+L+Y R NSFD
Sbjct: 61  ----DSDDSGSRRLARTTSYLSEDDIDKRAEMFIANFHKQLQIERQVSLQLKYLRANSFD 114

[Close]

BLAST of Csa1G423060 vs. TrEMBL
Match: A0A0D2R228_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G100700 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-28
Identity = 71/120 (59.17%), Postives = 93/120 (77.50%), Query Frame = 1


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           M+   LL RLR+AV K++ ++NF++ RWR+A+M+G TS  + RLSFT+RPGL+AC++D  
Sbjct: 1   MDKWYLLSRLRRAVNKVKVLLNFNMNRWRIASMIG-TSRSSKRLSFTDRPGLRACADD-- 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120
            + E S    +R L RTTSY SEDD+D RAE FIANF+RQL+IERQVSLEL+Y R NSFD
Sbjct: 61  NDSEDSGYCCNR-LARTTSYPSEDDIDKRAEMFIANFHRQLQIERQVSLELKYLRLNSFD 116

[Close]

BLAST of Csa1G423060 vs. TrEMBL
Match: A0A067DY34_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041618mg PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.9e-28
Identity = 64/123 (52.03%), Postives = 88/123 (71.54%), Query Frame = 1


Query: 5   SLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDIIMEEE 64
           S+L RLR AV+K++ ++N S+ RWR+A+ +   S    RLSF +RPGL+AC++D   +E 
Sbjct: 3   SMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGSKRRLSFNDRPGLRACTDDNYADES 62

Query: 65  QSVSSSS-------RGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGN 121
            + S+S+         L RT SY SEDD+D RAE FIANF+RQL+IERQ+SLEL+YCR N
Sbjct: 63  STDSASAGPRSHGGESLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRAN 122

[Close]

BLAST of Csa1G423060 vs. TrEMBL
Match: V4U1F3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009891mg PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-27
Identity = 66/123 (53.66%), Postives = 87/123 (70.73%), Query Frame = 1


Query: 5   SLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDIIMEEE 64
           S+L RLR AV+K++ ++N S+ RWR+A+ +   S    RLSF +RPGL+AC++D   +E 
Sbjct: 3   SMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGGKRRLSFNDRPGLRACTDDNYADES 62

Query: 65  Q----SVSSSSRG---LQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGN 121
                SV   S G   L RT SY SEDD+D RAE FIANF+RQL+IERQ+SLEL+YCR N
Sbjct: 63  SPDSASVGPRSHGGGSLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRAN 122

[Close]

BLAST of Csa1G423060 vs. TAIR10
Match: AT5G57510.1 (AT5G57510.1 unknown protein)

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-26
Identity = 66/119 (55.46%), Postives = 85/119 (71.43%), Query Frame = 1


Query: 5   SLLGRLRKAVKKIRFMMNFSIQR-WRLAAMLGRTSSRN-LRLSFTERPGLKACSEDIIME 64
           SLL RLR+AV K++F+++F I   W L  MLG +SS + LRLSF +RPGL A       E
Sbjct: 8   SLLNRLRQAVNKVKFVLSFKINSLWGLVPMLGSSSSSSSLRLSFNDRPGLTAA----FTE 67

Query: 65  EEQSVSSSSRG-LQRTTSY--ASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNS 119
            E   + SSRG L RT SY  +S++D+D++AE FIANFYRQL+IERQ+SLEL+YC+GN+
Sbjct: 68  NEPDSTGSSRGALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNN 122

[Close]

BLAST of Csa1G423060 vs. NCBI nr
Match: gi|778665135|ref|XP_011648497.1| (PREDICTED: uncharacterized protein LOC101218317 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 2.1e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII
Sbjct: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120
           MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD
Sbjct: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120

[Close]

BLAST of Csa1G423060 vs. NCBI nr
Match: gi|659107312|ref|XP_008453609.1| (PREDICTED: uncharacterized protein LOC103494271 [Cucumis melo])

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 115/121 (95.04%), Postives = 116/121 (95.87%), Query Frame = 1


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLK-ACSEDI 60
           MEAISLLGRLRKAVKKI+FMMNFSIQRWRLAAMLGRTSSRNLRLSF ERPGLK ACSEDI
Sbjct: 1   MEAISLLGRLRKAVKKIKFMMNFSIQRWRLAAMLGRTSSRNLRLSFNERPGLKAACSEDI 60

Query: 61  IMEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSF 120
           IMEEE  VSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCR NSF
Sbjct: 61  IMEEE-PVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRRNSF 120

[Close]

BLAST of Csa1G423060 vs. NCBI nr
Match: gi|747047839|ref|XP_011069905.1| (PREDICTED: uncharacterized protein LOC105155682 [Sesamum indicum])

HSP 1 Score: 155.6 bits (392), Expect = 5.5e-35
Identity = 78/124 (62.90%), Postives = 100/124 (80.65%), Query Frame = 1


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           +E  SL+GRL++AVKKI+F+++F++ RW+LA+M+GRTSSR  RLSF +RPGL+AC     
Sbjct: 4   VERWSLVGRLKRAVKKIKFLLDFNVNRWKLASMIGRTSSRKRRLSFNDRPGLRAC----- 63

Query: 61  MEEEQSVSS----SSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRG 120
           MEE+Q  +     SSRGL RT SY SEDD+D RA+AFIANF+RQLR ERQ+SLEL+Y RG
Sbjct: 64  MEEDQDPNDHDPGSSRGLHRTISYPSEDDIDKRADAFIANFHRQLRFERQISLELRYYRG 122

[Close]

BLAST of Csa1G423060 vs. NCBI nr
Match: gi|590580886|ref|XP_007014194.1| (Uncharacterized protein TCM_039000 [Theobroma cacao])

HSP 1 Score: 143.7 bits (361), Expect = 2.2e-31
Identity = 73/120 (60.83%), Postives = 94/120 (78.33%), Query Frame = 1


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           ME  SLL RLR+AVKK++F++NF++ RWR+A+M+G + S   RLSFT+RPGL+AC++D  
Sbjct: 1   MEKWSLLSRLRRAVKKVKFLLNFNMNRWRIASMIGASPSSQ-RLSFTDRPGLRACADDY- 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120
                S  S SR L RTTSY SEDD+D RAE FIANF++QL+IERQVSL+L+Y R NSFD
Sbjct: 61  ----DSDDSGSRRLARTTSYLSEDDIDKRAEMFIANFHKQLQIERQVSLQLKYLRANSFD 114

[Close]

BLAST of Csa1G423060 vs. NCBI nr
Match: gi|225446076|ref|XP_002272519.1| (PREDICTED: uncharacterized protein LOC100264996 [Vitis vinifera])

HSP 1 Score: 142.5 bits (358), Expect = 4.8e-31
Identity = 72/116 (62.07%), Postives = 90/116 (77.59%), Query Frame = 1


Query: 5   SLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDIIMEEE 64
           SLL RLR+AVKK+ F++NF I RW +A+ML RTSS   R SF +RPGL+ C+ED   E++
Sbjct: 11  SLLSRLRRAVKKVGFLLNFGIHRWHVASML-RTSSETRRFSFNDRPGLRGCTEDTDSEDQ 70

Query: 65  QSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 121
                SSRG+QRT S   E+DVD RAE FIANFYRQL++ERQVSLEL+YC+GNSF+
Sbjct: 71  PG---SSRGIQRTISGPCEEDVDKRAEVFIANFYRQLQMERQVSLELRYCKGNSFE 122

The following BLAST results are available for this feature:

BLAST of Csa1G423060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUK4_CUCSA	1.4e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423060 PE=4 SV=1	[more]
A0A061GQY6_THECC	1.5e-31	60.83	Uncharacterized protein OS=Theobroma cacao GN=TCM_039000 PE=4 SV=1	[more]
A0A0D2R228_GOSRA	2.0e-28	59.17	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G100700 PE=4 SV=1	[more]
A0A067DY34_CITSI	5.9e-28	52.03	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041618mg PE=4 SV=1	[more]
V4U1F3_9ROSI	1.7e-27	53.66	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009891mg PE=4 SV=1	[more]

BLAST of Csa1G423060 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57510.1	1.7e-26	55.46	unknown protein	[more]

BLAST of Csa1G423060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778665135\|ref\|XP_011648497.1\|	2.1e-58	100.00	PREDICTED: uncharacterized protein LOC101218317 [Cucumis sativus]	[more]
gi\|659107312\|ref\|XP_008453609.1\|	1.3e-52	95.04	PREDICTED: uncharacterized protein LOC103494271 [Cucumis melo]	[more]
gi\|747047839\|ref\|XP_011069905.1\|	5.5e-35	62.90	PREDICTED: uncharacterized protein LOC105155682 [Sesamum indicum]	[more]
gi\|590580886\|ref\|XP_007014194.1\|	2.2e-31	60.83	Uncharacterized protein TCM_039000 [Theobroma cacao]	[more]
gi\|225446076\|ref\|XP_002272519.1\|	4.8e-31	62.07	PREDICTED: uncharacterized protein LOC100264996 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:1903959	regulation of anion transmembrane transport
biological_process	GO:0071456	cellular response to hypoxia
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005741	mitochondrial outer membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008308	voltage-gated anion channel activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G423060.1	Csa1G423060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 83..114 score: 3.9
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 5..119 score: 1.6
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 5..119 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G423060	Cla018822	Watermelon (97103) v1	cuwmB079
Csa1G423060	ClCG06G013270	Watermelon (Charleston Gray)	cuwcgB066
Csa1G423060	Lsi06G011350	Bottle gourd (USVL1VR-Ls)	culsiB063
Csa1G423060	Cla97C06G122700	Watermelon (97103) v2	cuwmbB065
Csa1G423060	CSPI01G20200	Wild cucumber (PI 183967)	cpicuB001
Csa1G423060	Cucsa.092440	Cucumber (Gy14) v1	cgycuB097
Csa1G423060	CmaCh10G004000	Cucurbita maxima (Rimu)	cmacuB058
Csa1G423060	CmaCh11G003990	Cucurbita maxima (Rimu)	cmacuB098
Csa1G423060	CmoCh11G003940	Cucurbita moschata (Rifu)	cmocuB086
Csa1G423060	CmoCh10G004310	Cucurbita moschata (Rifu)	cmocuB049
Csa1G423060	Cp4.1LG04g12950	Cucurbita pepo (Zucchini)	cpecuB637
Csa1G423060	Cp4.1LG18g06190	Cucurbita pepo (Zucchini)	cpecuB351
Csa1G423060	CsGy1G020040	Cucumber (Gy14) v2	cgybcuB002
Csa1G423060	Carg09020	Silver-seed gourd	carcuB0619
Csa1G423060	Carg15246	Silver-seed gourd	carcuB0803

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G423060	Melon (DHL92) v3.6.1	cumedB034
Csa1G423060	Silver-seed gourd	carcuB0058
Csa1G423060	Watermelon (97103) v2	cuwmbB022
Csa1G423060	Wax gourd	cuwgoB003
Csa1G423060	Wax gourd	cuwgoB097
Csa1G423060	Cucumber (Chinese Long) v2	cucuB012
Csa1G423060	Cucumber (Gy14) v1	cgycuB092
Csa1G423060	Cucurbita maxima (Rimu)	cmacuB779
Csa1G423060	Cucurbita moschata (Rifu)	cmocuB772
Csa1G423060	Melon (DHL92) v3.5.1	cumeB042
Csa1G423060	Bottle gourd (USVL1VR-Ls)	culsiB016
Csa1G423060	Cucumber (Gy14) v2	cgybcuB055