Lsi06G011350 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G011350
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DUF761 domain protein
Location	chr06 : 21605353 .. 21605724 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGAGTAGCTTATTGGGTCGGCTGAGGAACGCCGTGAAGAAGCTTAAATTCATGATGAACTTTAGCATCCAAAGCTGGCGGTTGGCGGCCATGTTGGGGCGGACTTCATCGAGAAATCTCCGCCTTAGCTTCAACGAACGCCCAGGATTAAAGGGCTGTACGGAGGATATTATAGAAGAAGGGTCTGTTTCTTCATCTCGTGGGATACAAAGAACCGCCAGCTACGCTTCTGAAGATGACGTGGACCTGCGAGCGGAGGCTTTCATAGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGGAATAGTTTTAATCAACTTATGATTTCTCCTTGA

mRNA sequence

ATGGCGGCGAGTAGCTTATTGGGTCGGCTGAGGAACGCCGTGAAGAAGCTTAAATTCATGATGAACTTTAGCATCCAAAGCTGGCGGTTGGCGGCCATGTTGGGGCGGACTTCATCGAGAAATCTCCGCCTTAGCTTCAACGAACGCCCAGGATTAAAGGGCTGTACGGAGGATATTATAGAAGAAGGGTCTGTTTCTTCATCTCGTGGGATACAAAGAACCGCCAGCTACGCTTCTGAAGATGACGTGGACCTGCGAGCGGAGGCTTTCATAGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGGAATAGTTTTAATCAACTTATGATTTCTCCTTGA

Coding sequence (CDS)

ATGGCGGCGAGTAGCTTATTGGGTCGGCTGAGGAACGCCGTGAAGAAGCTTAAATTCATGATGAACTTTAGCATCCAAAGCTGGCGGTTGGCGGCCATGTTGGGGCGGACTTCATCGAGAAATCTCCGCCTTAGCTTCAACGAACGCCCAGGATTAAAGGGCTGTACGGAGGATATTATAGAAGAAGGGTCTGTTTCTTCATCTCGTGGGATACAAAGAACCGCCAGCTACGCTTCTGAAGATGACGTGGACCTGCGAGCGGAGGCTTTCATAGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGGAATAGTTTTAATCAACTTATGATTTCTCCTTGA

Protein sequence

MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDIIEEGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFNQLMISP

Homology

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BLAST of Lsi06G011350 vs. TrEMBL
Match: A0A0A0LUK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423060 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.4e-45
Identity = 103/120 (85.83%), Postives = 108/120 (90.00%), Query Frame = 1


Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           M A SLLGRLR AVKK++FMMNFSIQ WRLAAMLGRTSSRNLRLSF ERPGLK C+EDII
Sbjct: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60

Query: 61  --EEGSV-SSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 118
             EE SV SSSRG+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLELQYCRGNSF+
Sbjct: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120

[Close]

BLAST of Lsi06G011350 vs. TrEMBL
Match: A0A022PZI7_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a024238mg PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-26
Identity = 66/125 (52.80%), Postives = 92/125 (73.60%), Query Frame = 1


Query: 6   LLGRLRNAVKKLKFMMNFSIQSWR--LAAMLGRTSSRNLRLSFNERPGLKGCTEDIIEEG 65
           LLG+LR AV K+KF+++F++  W+  LA+++G  SS N RLSFN+RPGL    ED   E 
Sbjct: 8   LLGKLRRAVNKIKFLLDFNVNRWKFDLASIVGVISSNNRRLSFNDRPGLMAFVEDSAPEN 67

Query: 66  SVSSSRGIQRTASYASEDD-----VDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFNQ 124
           S   S+G+QR+ SY SE++     +D RA+AFIANFY+QL++ERQ+SLEL+Y RGNSF+ 
Sbjct: 68  SPGLSKGLQRSTSYQSENNQDDYNIDERADAFIANFYKQLQLERQISLELRYYRGNSFDS 127

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BLAST of Lsi06G011350 vs. TrEMBL
Match: A0A061GQY6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_039000 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-26
Identity = 65/113 (57.52%), Postives = 86/113 (76.11%), Query Frame = 1


Query: 5   SLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDIIEEGS 64
           SLL RLR AVKK+KF++NF++  WR+A+M+G + S   RLSF +RPGL+ C +D   +  
Sbjct: 5   SLLSRLRRAVKKVKFLLNFNMNRWRIASMIGASPSSQ-RLSFTDRPGLRACADDY--DSD 64

Query: 65  VSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 118
            S SR + RT SY SEDD+D RAE FIANF++QL+IERQVSL+L+Y R NSF+
Sbjct: 65  DSGSRRLARTTSYLSEDDIDKRAEMFIANFHKQLQIERQVSLQLKYLRANSFD 114

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BLAST of Lsi06G011350 vs. TrEMBL
Match: A0A067DY34_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041618mg PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.3e-26
Identity = 65/125 (52.00%), Postives = 86/125 (68.80%), Query Frame = 1


Query: 5   SLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTED-IIEEG 64
           S+L RLRNAV+K+K ++N S+  WR+A+ +   S    RLSFN+RPGL+ CT+D   +E 
Sbjct: 3   SMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGSKRRLSFNDRPGLRACTDDNYADES 62

Query: 65  SVSSS---------RGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGN 120
           S  S+           + RT SY SEDD+D RAE FIANF+RQL+IERQ+SLEL+YCR N
Sbjct: 63  STDSASAGPRSHGGESLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRAN 122

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BLAST of Lsi06G011350 vs. TrEMBL
Match: V4U1F3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009891mg PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-25
Identity = 64/125 (51.20%), Postives = 84/125 (67.20%), Query Frame = 1


Query: 5   SLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDIIEEGS 64
           S+L RLRNAV+K+K ++N S+  WR+A+ +   S    RLSFN+RPGL+ CT+D   + S
Sbjct: 3   SMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGGKRRLSFNDRPGLRACTDDNYADES 62

Query: 65  VSSSRGI----------QRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGN 120
              S  +           RT SY SEDD+D RAE FIANF+RQL+IERQ+SLEL+YCR N
Sbjct: 63  SPDSASVGPRSHGGGSLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRAN 122

[Close]

BLAST of Lsi06G011350 vs. TAIR10
Match: AT5G57510.1 (AT5G57510.1 unknown protein)

HSP 1 Score: 114.4 bits (285), Expect = 5.0e-26
Identity = 72/121 (59.50%), Postives = 90/121 (74.38%), Query Frame = 1


Query: 5   SLLGRLRNAVKKLKFMMNFSIQS-WRLAAMLGRTSSRN-LRLSFNERPGLKGC-TEDIIE 64
           SLL RLR AV K+KF+++F I S W L  MLG +SS + LRLSFN+RPGL    TE+  E
Sbjct: 8   SLLNRLRQAVNKVKFVLSFKINSLWGLVPMLGSSSSSSSLRLSFNDRPGLTAAFTEN--E 67

Query: 65  EGSVSSSRG-IQRTASY--ASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGN--SF 118
             S  SSRG + RT SY  +S++D+D +AE FIANFYRQL+IERQ+SLEL+YC+GN  SF
Sbjct: 68  PDSTGSSRGALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSF 126

[Close]

BLAST of Lsi06G011350 vs. NCBI nr
Match: gi|778665135|ref|XP_011648497.1| (PREDICTED: uncharacterized protein LOC101218317 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 2.0e-45
Identity = 103/120 (85.83%), Postives = 108/120 (90.00%), Query Frame = 1


Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           M A SLLGRLR AVKK++FMMNFSIQ WRLAAMLGRTSSRNLRLSF ERPGLK C+EDII
Sbjct: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60

Query: 61  --EEGSV-SSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 118
             EE SV SSSRG+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLELQYCRGNSF+
Sbjct: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120

[Close]

BLAST of Lsi06G011350 vs. NCBI nr
Match: gi|659107312|ref|XP_008453609.1| (PREDICTED: uncharacterized protein LOC103494271 [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 3.8e-44
Identity = 102/120 (85.00%), Postives = 106/120 (88.33%), Query Frame = 1


Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKG-CTEDI 60
           M A SLLGRLR AVKK+KFMMNFSIQ WRLAAMLGRTSSRNLRLSFNERPGLK  C+EDI
Sbjct: 1   MEAISLLGRLRKAVKKIKFMMNFSIQRWRLAAMLGRTSSRNLRLSFNERPGLKAACSEDI 60

Query: 61  I--EEGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 118
           I  EE   SSSRG+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLELQYCR NSF+
Sbjct: 61  IMEEEPVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRRNSFD 120

[Close]

BLAST of Lsi06G011350 vs. NCBI nr
Match: gi|225446076|ref|XP_002272519.1| (PREDICTED: uncharacterized protein LOC100264996 [Vitis vinifera])

HSP 1 Score: 149.4 bits (376), Expect = 4.0e-33
Identity = 78/120 (65.00%), Postives = 90/120 (75.00%), Query Frame = 1


Query: 4   SSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDIIEEG 63
           SSLL RLR AVKK+ F++NF I  W +A+ML RTSS   R SFN+RPGL+GCTED   E 
Sbjct: 10  SSLLSRLRRAVKKVGFLLNFGIHRWHVASML-RTSSETRRFSFNDRPGLRGCTEDTDSED 69

Query: 64  SVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFNQLMISP 123
              SSRGIQRT S   E+DVD RAE FIANFYRQL++ERQVSLEL+YC+GNSF     SP
Sbjct: 70  QPGSSRGIQRTISGPCEEDVDKRAEVFIANFYRQLQMERQVSLELRYCKGNSFESTTTSP 128

[Close]

BLAST of Lsi06G011350 vs. NCBI nr
Match: gi|747047839|ref|XP_011069905.1| (PREDICTED: uncharacterized protein LOC105155682 [Sesamum indicum])

HSP 1 Score: 145.6 bits (366), Expect = 5.8e-32
Identity = 71/115 (61.74%), Postives = 94/115 (81.74%), Query Frame = 1


Query: 5   SLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDIIE--E 64
           SL+GRL+ AVKK+KF+++F++  W+LA+M+GRTSSR  RLSFN+RPGL+ C E+  +  +
Sbjct: 8   SLVGRLKRAVKKIKFLLDFNVNRWKLASMIGRTSSRKRRLSFNDRPGLRACMEEDQDPND 67

Query: 65  GSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 118
               SSRG+ RT SY SEDD+D RA+AFIANF+RQLR ERQ+SLEL+Y RGNSF+
Sbjct: 68  HDPGSSRGLHRTISYPSEDDIDKRADAFIANFHRQLRFERQISLELRYYRGNSFD 122

[Close]

BLAST of Lsi06G011350 vs. NCBI nr
Match: gi|359485093|ref|XP_003633214.1| (PREDICTED: uncharacterized protein LOC100259802 [Vitis vinifera])

HSP 1 Score: 145.2 bits (365), Expect = 7.5e-32
Identity = 77/120 (64.17%), Postives = 90/120 (75.00%), Query Frame = 1


Query: 4   SSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDIIEEG 63
           SSLL RLR AVKK+ F++NF I  W +A+ML RTSS   R SFN+RPGL+GCTED   E 
Sbjct: 10  SSLLSRLRRAVKKVGFLLNFGIHRWHVASML-RTSSDTRRFSFNDRPGLRGCTEDTDSED 69

Query: 64  SVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFNQLMISP 123
              SSRGIQRT S   E+DVD RAE FIANFYRQL++ERQVSLEL+YC+GNS +    SP
Sbjct: 70  QPGSSRGIQRTISGPCEEDVDKRAEDFIANFYRQLQMERQVSLELRYCKGNSSDSTTTSP 128

The following BLAST results are available for this feature:

BLAST of Lsi06G011350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G011350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUK4_CUCSA	1.4e-45	85.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423060 PE=4 SV=1	[more]
A0A022PZI7_ERYGU	1.5e-26	52.80	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a024238mg PE=4 SV=1	[more]
A0A061GQY6_THECC	1.9e-26	57.52	Uncharacterized protein OS=Theobroma cacao GN=TCM_039000 PE=4 SV=1	[more]
A0A067DY34_CITSI	4.3e-26	52.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041618mg PE=4 SV=1	[more]
V4U1F3_9ROSI	1.3e-25	51.20	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009891mg PE=4 SV=1	[more]

BLAST of Lsi06G011350 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57510.1	5.0e-26	59.50	unknown protein	[more]

BLAST of Lsi06G011350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778665135\|ref\|XP_011648497.1\|	2.0e-45	85.83	PREDICTED: uncharacterized protein LOC101218317 [Cucumis sativus]	[more]
gi\|659107312\|ref\|XP_008453609.1\|	3.8e-44	85.00	PREDICTED: uncharacterized protein LOC103494271 [Cucumis melo]	[more]
gi\|225446076\|ref\|XP_002272519.1\|	4.0e-33	65.00	PREDICTED: uncharacterized protein LOC100264996 [Vitis vinifera]	[more]
gi\|747047839\|ref\|XP_011069905.1\|	5.8e-32	61.74	PREDICTED: uncharacterized protein LOC105155682 [Sesamum indicum]	[more]
gi\|359485093\|ref\|XP_003633214.1\|	7.5e-32	64.17	PREDICTED: uncharacterized protein LOC100259802 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0071456	cellular response to hypoxia
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G011350.1	Lsi06G011350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 80..111 score: 4.9
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 5..120 score: 3.9
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 5..120 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G011350	Csa1G423060	Cucumber (Chinese Long) v2	culsiB063
Lsi06G011350	CSPI01G20200	Wild cucumber (PI 183967)	cpilsiB065
Lsi06G011350	Cucsa.092440	Cucumber (Gy14) v1	cgylsiB105
Lsi06G011350	CmaCh11G003990	Cucurbita maxima (Rimu)	cmalsiB148
Lsi06G011350	CmoCh10G004310	Cucurbita moschata (Rifu)	cmolsiB063
Lsi06G011350	CmoCh11G003940	Cucurbita moschata (Rifu)	cmolsiB132
Lsi06G011350	Cla018822	Watermelon (97103) v1	lsiwmB416
Lsi06G011350	ClCG06G013270	Watermelon (Charleston Gray)	lsiwcgB374
Lsi06G011350	Cla97C06G122700	Watermelon (97103) v2	lsiwmbB376
Lsi06G011350	Cp4.1LG04g12950	Cucurbita pepo (Zucchini)	cpelsiB558
Lsi06G011350	Cp4.1LG18g06190	Cucurbita pepo (Zucchini)	cpelsiB303
Lsi06G011350	CsGy1G020040	Cucumber (Gy14) v2	cgyblsiB061
Lsi06G011350	Carg09020	Silver-seed gourd	carlsiB541
Lsi06G011350	Carg15246	Silver-seed gourd	carlsiB727
Lsi06G011350	CsaV3_1G031530	Cucumber (Chinese Long) v3	cuclsiB076

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G011350	Cucurbita maxima (Rimu)	cmalsiB077
Lsi06G011350	Melon (DHL92) v3.5.1	lsimeB400
Lsi06G011350	Melon (DHL92) v3.6.1	lsimedB422
Lsi06G011350	Cucumber (Chinese Long) v3	cuclsiB146
Lsi06G011350	Wax gourd	lsiwgoB523
Lsi06G011350	Bottle gourd (USVL1VR-Ls)	lsilsiB061