CsGy1G020040 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G020040
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	DUF761 domain-containing protein
Location	Chr1 : 18784862 .. 18785293 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGATTAGCTTATTGGGTCGGCTGAGGAAGGCGGTGAAGAAGATTAGATTCATGATGAATTTTAGCATTCAAAGATGGCGGTTAGCGGCGATGTTAGGCCGGACTTCGTCGAGAAATCTCCGTCTTAGCTTCACCGAACGTCCGGGATTAAAGGCTTGTTCGGAAGATATTATTATGGAAGAAGAACAGTCGGTTTCTTCTTCATCTCGTGGGCTACAAAGAACCACCAGCTACGCTTCTGAAGATGACGTGGACTCCCGTGCGGAGGCTTTTATTGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGAAATAGTTTTGATTAATCATCAATATAATCCCACCTATATATTATATTCTTCTCCAATTTGGTGAGGCAGATTCAATTCGATTAG

mRNA sequence

ATGGAGGCGATTAGCTTATTGGGTCGGCTGAGGAAGGCGGTGAAGAAGATTAGATTCATGATGAATTTTAGCATTCAAAGATGGCGGTTAGCGGCGATGTTAGGCCGGACTTCGTCGAGAAATCTCCGTCTTAGCTTCACCGAACGTCCGGGATTAAAGGCTTGTTCGGAAGATATTATTATGGAAGAAGAACAGTCGGTTTCTTCTTCATCTCGTGGGCTACAAAGAACCACCAGCTACGCTTCTGAAGATGACGTGGACTCCCGTGCGGAGGCTTTTATTGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGATTCAATTCGATTAG

Coding sequence (CDS)

ATGGAGGCGATTAGCTTATTGGGTCGGCTGAGGAAGGCGGTGAAGAAGATTAGATTCATGATGAATTTTAGCATTCAAAGATGGCGGTTAGCGGCGATGTTAGGCCGGACTTCGTCGAGAAATCTCCGTCTTAGCTTCACCGAACGTCCGGGATTAAAGGCTTGTTCGGAAGATATTATTATGGAAGAAGAACAGTCGGTTTCTTCTTCATCTCGTGGGCTACAAAGAACCACCAGCTACGCTTCTGAAGATGACGTGGACTCCCGTGCGGAGGCTTTTATTGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGATTCAATTCGATTAG

Protein sequence

MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDIIMEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQIQFD

Homology

[Close]

BLAST of CsGy1G020040 vs. NCBI nr
Match: XP_011648497.1 (PREDICTED: uncharacterized protein LOC101218317 [Cucumis sativus] >KGN65448.1 hypothetical protein Csa_1G423060 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 3.4e-48
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII
Sbjct: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQIQFD 111
           MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQ+  +
Sbjct: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLE 110

[Close]

BLAST of CsGy1G020040 vs. NCBI nr
Match: XP_008453609.1 (PREDICTED: uncharacterized protein LOC103494271 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 1.9e-43
Identity = 102/111 (91.89%), Postives = 105/111 (94.59%), Query Frame = 0


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLK-ACSEDI 60
           MEAISLLGRLRKAVKKI+FMMNFSIQRWRLAAMLGRTSSRNLRLSF ERPGLK ACSEDI
Sbjct: 1   MEAISLLGRLRKAVKKIKFMMNFSIQRWRLAAMLGRTSSRNLRLSFNERPGLKAACSEDI 60

Query: 61  IMEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQIQFD 111
           IMEEE  VSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQ+  +
Sbjct: 61  IMEEE-PVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLE 110

[Close]

BLAST of CsGy1G020040 vs. NCBI nr
Match: XP_022921804.1 (uncharacterized protein LOC111429947 [Cucurbita moschata])

HSP 1 Score: 161.0 bits (406), Expect = 2.3e-36
Identity = 85/110 (77.27%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           M A SLLGRLRKAV+K++F+M F+IQ WRLAAMLGRTSSRNLRLSF E PGLK C EDII
Sbjct: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQIQFD 111
              E S SSS RGLQRT SYASEDDVD RAEAFIANFYRQLRIERQ+  +
Sbjct: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLE 110

[Close]

BLAST of CsGy1G020040 vs. NCBI nr
Match: XP_023515447.1 (uncharacterized protein LOC111779603 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.8 bits (403), Expect = 5.1e-36
Identity = 86/110 (78.18%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           M A SLLGRLRKAV+K++FMM F+IQ WRLAAMLGRTSSRNLRLSF E PGLK C EDII
Sbjct: 1   MAATSLLGRLRKAVEKLKFMMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQIQFD 111
              E S +SSSRGLQRT SYASEDDVD RAEAFIANFYRQLRIERQ+  +
Sbjct: 61  ESSEHS-NSSSRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLE 109

[Close]

BLAST of CsGy1G020040 vs. NCBI nr
Match: XP_022987374.1 (uncharacterized protein LOC111484948 [Cucurbita maxima])

HSP 1 Score: 157.9 bits (398), Expect = 2.0e-35
Identity = 84/110 (76.36%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           M A SLLGRLR AV+K++FMM F+IQ WRLAAMLGRTSSRNLRLSF E PGLK C EDII
Sbjct: 1   MAATSLLGRLRNAVEKLKFMMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQIQFD 111
              E S SSS  GLQRT SYASEDDVD RAEAFIANFYRQLRIERQ+  +
Sbjct: 61  ESSEHSNSSSRGGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLE 110

[Close]

BLAST of CsGy1G020040 vs. TAIR10
Match: AT5G57510.1 (unknown protein)

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-19
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 5   SLLGRLRKAVKKIRFMMNFSIQR-WRLAAMLG-RTSSRNLRLSFTERPGLKACSEDIIME 64
           SLL RLR+AV K++F+++F I   W L  MLG  +SS +LRLSF +RPGL A       E
Sbjct: 8   SLLNRLRQAVNKVKFVLSFKINSLWGLVPMLGSSSSSSSLRLSFNDRPGLTAA----FTE 67

Query: 65  EEQSVSSSSRG-LQRTTSY--ASEDDVDSRAEAFIANFYRQLRIERQIQFD 111
            E   + SSRG L RT SY  +S++D+D++AE FIANFYRQL+IERQI  +
Sbjct: 68  NEPDSTGSSRGALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLE 114

[Close]

BLAST of CsGy1G020040 vs. TrEMBL
Match: tr|A0A0A0LUK4|A0A0A0LUK4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423060 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.3e-48
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII
Sbjct: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQIQFD 111
           MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQ+  +
Sbjct: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLE 110

[Close]

BLAST of CsGy1G020040 vs. TrEMBL
Match: tr|A0A1S3BWN6|A0A1S3BWN6_CUCME (uncharacterized protein LOC103494271 OS=Cucumis melo OX=3656 GN=LOC103494271 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.3e-43
Identity = 102/111 (91.89%), Postives = 105/111 (94.59%), Query Frame = 0


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLK-ACSEDI 60
           MEAISLLGRLRKAVKKI+FMMNFSIQRWRLAAMLGRTSSRNLRLSF ERPGLK ACSEDI
Sbjct: 1   MEAISLLGRLRKAVKKIKFMMNFSIQRWRLAAMLGRTSSRNLRLSFNERPGLKAACSEDI 60

Query: 61  IMEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQIQFD 111
           IMEEE  VSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQ+  +
Sbjct: 61  IMEEE-PVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLE 110

[Close]

BLAST of CsGy1G020040 vs. TrEMBL
Match: tr|A0A1R3KF19|A0A1R3KF19_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_01854 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           ME  SLLGRLR+AVKK++F++NF++ RWR+A M+G  SSR  RLSFT++PGL+AC  D +
Sbjct: 1   MENCSLLGRLRRAVKKVKFLLNFNMNRWRIANMIGARSSR--RLSFTDKPGLRACVADDL 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQI 108
            + + S S SSR L RTTSY SEDD+D RAE FIANF++QL+IERQ+
Sbjct: 61  YDSDDSSSHSSRRLSRTTSYPSEDDIDKRAEMFIANFHKQLQIERQV 105

[Close]

BLAST of CsGy1G020040 vs. TrEMBL
Match: tr|A0A1R3G4U7|A0A1R3G4U7_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_36848 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-26
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           ME  SLLGRLR+AVKK++F++NF++ RWR+A M+G  SSR  RLSFT++PGL+AC  D +
Sbjct: 1   MENWSLLGRLRRAVKKVKFLLNFNMNRWRIANMIGARSSR--RLSFTDKPGLRACVADDL 60

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQI 108
            + + S S SSR L RTTSY SEDD+D RAE FIANF++QL+IERQ+
Sbjct: 61  YDSDDSGSHSSRRLSRTTSYPSEDDIDKRAEMFIANFHKQLQIERQV 105

[Close]

BLAST of CsGy1G020040 vs. TrEMBL
Match: tr|A0A1Q3AVK8|A0A1Q3AVK8_CEPFO (DUF761 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03124 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.9e-24
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 0


Query: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60
           M+  S+L  LR+AVKK++ +MN ++ RWRLA+M+G +SS+  RLSF +RPGL+AC  DI 
Sbjct: 3   MDKWSVLSSLRRAVKKVKILMNLNLHRWRLASMIGSSSSKR-RLSFNDRPGLRACITDI- 62

Query: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQIQFD 111
            + E   S SSRGL RTTSYASEDD+D RA+ FIANF+RQL+ ERQ+  +
Sbjct: 63  -DTESYDSGSSRGLHRTTSYASEDDIDKRADLFIANFHRQLQFERQVSLE 109

The following BLAST results are available for this feature:

BLAST of CsGy1G020040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648497.1	3.4e-48	96.36	PREDICTED: uncharacterized protein LOC101218317 [Cucumis sativus] >KGN65448.1 hy...	[more]
XP_008453609.1	1.9e-43	91.89	PREDICTED: uncharacterized protein LOC103494271 [Cucumis melo]	[more]
XP_022921804.1	2.3e-36	77.27	uncharacterized protein LOC111429947 [Cucurbita moschata]	[more]
XP_023515447.1	5.1e-36	78.18	uncharacterized protein LOC111779603 [Cucurbita pepo subsp. pepo]	[more]
XP_022987374.1	2.0e-35	76.36	uncharacterized protein LOC111484948 [Cucurbita maxima]	[more]

BLAST of CsGy1G020040 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57510.1	1.4e-19	53.15	unknown protein	[more]

BLAST of CsGy1G020040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G020040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUK4\|A0A0A0LUK4_CUCSA	2.3e-48	96.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423060 PE=4 SV=1	[more]
tr\|A0A1S3BWN6\|A0A1S3BWN6_CUCME	1.3e-43	91.89	uncharacterized protein LOC103494271 OS=Cucumis melo OX=3656 GN=LOC103494271 PE=...	[more]
tr\|A0A1R3KF19\|A0A1R3KF19_COCAP	6.4e-27	61.68	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_01854 PE=4 ...	[more]
tr\|A0A1R3G4U7\|A0A1R3G4U7_9ROSI	1.4e-26	61.68	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_36848 PE=4 SV=1	[more]
tr\|A0A1Q3AVK8\|A0A1Q3AVK8_CEPFO	3.9e-24	57.27	DUF761 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_0...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071456	cellular response to hypoxia
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G020040.1	CsGy1G020040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 83..109 e-value: 6.3E-10 score: 38.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..81
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 3..108
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 3..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G020040	Cla018822	Watermelon (97103) v1	cgybwmB080
CsGy1G020040	Csa1G423060	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G020040	ClCG06G013270	Watermelon (Charleston Gray)	cgybwcgB064
CsGy1G020040	CSPI01G20200	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G020040	CmaCh11G003990	Cucurbita maxima (Rimu)	cgybcmaB041
CsGy1G020040	CmaCh10G004000	Cucurbita maxima (Rimu)	cgybcmaB015
CsGy1G020040	CmoCh11G003940	Cucurbita moschata (Rifu)	cgybcmoB038
CsGy1G020040	CmoCh10G004310	Cucurbita moschata (Rifu)	cgybcmoB015
CsGy1G020040	Lsi06G011350	Bottle gourd (USVL1VR-Ls)	cgyblsiB061
CsGy1G020040	Cp4.1LG04g12950	Cucurbita pepo (Zucchini)	cgybcpeB110
CsGy1G020040	Cp4.1LG18g06190	Cucurbita pepo (Zucchini)	cgybcpeB042
CsGy1G020040	CsaV3_1G031530	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G020040	Cla97C06G122700	Watermelon (97103) v2	cgybwmbB064
CsGy1G020040	Carg09020	Silver-seed gourd	carcgybB0591
CsGy1G020040	Carg15246	Silver-seed gourd	carcgybB0779

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G020040	Cucumber (Gy14) v2	cgybcgybB014
CsGy1G020040	Cucurbita maxima (Rimu)	cgybcmaB135
CsGy1G020040	Cucurbita moschata (Rifu)	cgybcmoB126
CsGy1G020040	Melon (DHL92) v3.5.1	cgybmeB039
CsGy1G020040	Melon (DHL92) v3.6.1	cgybmedB033
CsGy1G020040	Silver-seed gourd	carcgybB0059
CsGy1G020040	Cucumber (Chinese Long) v3	cgybcucB023
CsGy1G020040	Wax gourd	cgybwgoB095